Wall clock time and date at job start Tue Mar 31 2020 03:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 113.99623 * 2 1 4 4 C 1.52998 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47401 * 64.99613 * 4 3 2 6 6 C 1.34774 * 120.00371 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99646 * 359.97438 * 6 5 4 8 8 C 1.48184 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.39032 * 119.68616 * 179.97438 * 8 6 5 10 10 C 1.39458 * 118.95543 * 179.74823 * 9 8 6 11 11 N 1.39189 * 120.83294 * 180.23410 * 10 9 8 12 12 C 1.46493 * 120.00196 * 0.02562 * 11 10 9 13 13 C 1.46499 * 119.99515 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47138 * 90.00326 * 13 11 10 15 15 H 1.08001 * 119.99684 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00007 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99719 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47281 * 60.00274 * 18 16 14 20 20 H 1.48503 * 109.46873 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47278 * 299.99981 * 18 16 14 22 22 C 1.39419 * 118.33264 * 0.25347 * 10 9 8 23 23 C 1.38234 * 119.26403 * 0.02562 * 22 10 9 24 24 N 1.31643 * 120.99711 * 0.02562 * 23 22 10 25 25 H 1.08996 * 109.46981 * 60.00271 * 1 2 3 26 26 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47308 * 299.99796 * 1 2 3 28 28 H 1.09003 * 109.47177 * 59.99963 * 3 2 1 29 29 H 1.09003 * 109.46968 * 299.99874 * 3 2 1 30 30 H 1.09002 * 109.46977 * 304.99559 * 4 3 2 31 31 H 1.08997 * 109.47073 * 184.99852 * 4 3 2 32 32 H 0.97006 * 119.99860 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.52698 * 0.03186 * 9 8 6 34 34 H 1.09008 * 109.47354 * 89.99788 * 12 11 10 35 35 H 1.08998 * 109.47423 * 210.00075 * 12 11 10 36 36 H 1.08999 * 109.47434 * 330.00094 * 12 11 10 37 37 H 1.09003 * 109.46693 * 210.00013 * 13 11 10 38 38 H 1.09002 * 109.47708 * 329.99654 * 13 11 10 39 39 H 0.97000 * 120.00270 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.36852 * 179.97438 * 22 10 9 41 41 H 1.08000 * 119.50039 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 5.2883 0.3557 -1.4762 7 8 6.1066 0.6825 -0.6394 8 6 5.7337 -0.2712 -2.7429 9 6 7.0894 -0.4830 -2.9669 10 6 7.4912 -1.0789 -4.1620 11 7 8.8377 -1.3137 -4.4247 12 6 9.8533 -0.9342 -3.4394 13 6 9.2393 -1.9415 -5.6860 14 6 9.4827 -0.8751 -6.7227 15 1 9.3509 0.1660 -6.4676 16 6 9.8735 -1.2287 -7.9967 17 7 10.0334 -2.4965 -8.3075 18 14 10.1744 0.0931 -9.2819 19 1 11.2526 1.0012 -8.8150 20 1 10.5816 -0.5432 -10.5604 21 1 8.9277 0.8720 -9.4922 22 6 6.5103 -1.4333 -5.0872 23 6 5.1827 -1.1843 -4.7933 24 7 4.8344 -0.6191 -3.6565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5684 0.8410 31 1 3.9785 2.1767 0.0889 32 1 3.3225 0.3041 -1.9208 33 1 7.8196 -0.1948 -2.2252 34 1 10.0286 -1.7674 -2.7588 35 1 10.7814 -0.6828 -3.9527 36 1 9.5055 -0.0699 -2.8736 37 1 10.1541 -2.5138 -5.5318 38 1 8.4475 -2.6075 -6.0287 39 1 10.3087 -2.7453 -9.2037 40 1 6.7846 -1.8964 -6.0235 41 1 4.4197 -1.4569 -5.5075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865398958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:36 Heat of formation + Delta-G solvation = -40.562295 kcal Electronic energy + Delta-G solvation = -22774.401342 eV Core-core repulsion = 19268.634647 eV Total energy + Delta-G solvation = -3505.766696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18657 -38.93435 -38.05031 -36.30983 -34.71054 -32.88903 -31.25918 -30.51680 -29.69918 -28.04378 -26.61144 -25.45563 -24.37865 -22.96242 -22.17000 -21.45664 -19.87759 -17.69857 -16.97930 -16.72836 -16.58259 -16.18859 -15.81620 -15.18235 -15.05542 -14.96434 -14.62722 -14.49046 -13.96344 -13.70916 -13.50477 -13.29698 -13.12687 -12.69167 -12.37031 -12.23314 -12.03353 -11.69563 -11.57139 -11.50089 -11.17051 -10.90708 -10.55476 -10.33487 -10.15677 -10.08760 -9.93877 -9.44812 -9.06602 -9.06191 -8.64311 -8.58868 -6.90331 -6.16981 -4.28016 1.24365 2.03522 3.14062 3.20587 3.23009 3.27801 3.30982 3.43474 3.92057 4.32174 4.48351 4.54812 4.64484 4.83861 4.96352 5.04864 5.07116 5.12282 5.21670 5.34233 5.44519 5.51913 5.63791 5.73505 5.75934 5.95290 6.04034 6.09558 6.25997 6.36435 6.46001 6.63258 6.78567 6.91627 7.12983 7.16967 7.59955 7.69460 7.98392 8.04963 8.18301 8.24423 8.51577 8.79570 9.39367 10.86148 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026504 B = 0.002986 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.187345 B = 9375.413895 C = 9786.874216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.711 5.711 6 C 0.579 3.421 7 O -0.543 6.543 8 C 0.103 3.897 9 C -0.204 4.204 10 C 0.261 3.739 11 N -0.599 5.599 12 C 0.091 3.909 13 C 0.246 3.754 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.218 4.218 23 C 0.127 3.873 24 N -0.522 5.522 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.415 0.585 33 H 0.137 0.863 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.266 0.734 40 H 0.146 0.854 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.995 4.891 13.073 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.364 5.364 6 C 0.365 3.635 7 O -0.420 6.420 8 C -0.035 4.035 9 C -0.231 4.231 10 C 0.145 3.855 11 N -0.303 5.303 12 C -0.053 4.053 13 C 0.127 3.873 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.244 4.244 23 C -0.030 4.030 24 N -0.239 5.239 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.164 0.836 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.870 4.955 13.676 20.801 hybrid contribution 0.648 0.635 -1.403 1.671 sum -14.222 5.591 12.272 19.599 Atomic orbital electron populations 1.22758 0.80844 1.02985 0.99939 1.87970 1.19838 1.27338 1.95411 1.22821 0.93191 0.85505 1.01330 1.21375 0.91809 0.99261 0.87845 1.45715 1.07864 1.62440 1.20346 1.18053 0.82147 0.77751 0.85579 1.90737 1.53292 1.51907 1.46044 1.20414 0.90125 0.99230 0.93698 1.21460 0.96261 1.06771 0.98642 1.18058 0.85797 0.89874 0.91791 1.47133 1.01275 1.61853 1.20048 1.21614 0.92482 0.99144 0.92013 1.19406 0.96330 0.93147 0.78432 1.21484 1.47045 0.93584 0.95472 0.92206 1.24953 0.95003 0.95599 0.98348 1.69910 1.46605 1.15644 1.20966 0.86544 0.78864 0.81585 0.80417 1.20172 1.21105 1.20036 1.22010 0.92897 1.07441 1.02012 1.22278 0.94325 0.93555 0.92813 1.67433 1.37428 1.15809 1.03225 0.93891 0.89492 0.94134 0.91629 0.92341 0.90559 0.89892 0.74839 0.84496 0.93857 0.90823 0.92176 0.94635 0.94376 0.92421 0.83613 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.80 10.65 -35.23 -0.38 -4.17 16 3 C 0.05 0.38 6.07 37.16 0.23 0.61 16 4 C 0.12 1.26 6.06 -4.04 -0.02 1.24 16 5 N -0.71 -9.45 5.49 -61.14 -0.34 -9.78 16 6 C 0.58 9.70 7.81 -12.18 -0.10 9.60 16 7 O -0.54 -10.26 16.32 5.35 0.09 -10.17 16 8 C 0.10 1.83 6.75 -83.05 -0.56 1.27 16 9 C -0.20 -3.81 8.78 -38.83 -0.34 -4.16 16 10 C 0.26 5.21 6.57 -83.63 -0.55 4.66 16 11 N -0.60 -12.45 2.98 -180.82 -0.54 -12.99 16 12 C 0.09 1.58 10.22 59.84 0.61 2.19 16 13 C 0.25 5.91 4.94 -5.19 -0.03 5.88 16 14 C -0.54 -14.13 9.39 -34.44 -0.32 -14.45 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.22 -4.15 9.27 -39.14 -0.36 -4.51 16 23 C 0.13 2.11 11.17 -17.63 -0.20 1.91 16 24 N -0.52 -8.85 9.54 -9.89 -0.09 -8.94 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 5.24 7.80 -40.82 -0.32 4.93 16 33 H 0.14 2.49 5.86 -52.49 -0.31 2.18 16 34 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.06 0.96 6.26 -51.93 -0.32 0.64 16 37 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.04 0.95 6.26 -51.93 -0.32 0.63 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.15 2.94 6.26 -52.49 -0.33 2.61 16 41 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -30.67 350.51 -6.68 -37.35 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.79 Total: 4.55 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.63 Total: 7.18 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.23 Total: -55.74 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.29 Total: -14.35 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.67 -6.68 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865398958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.210 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds