Wall clock time and date at job start Tue Mar 31 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42907 * 113.99623 * 2 1 4 4 C 1.52998 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47401 * 64.99613 * 4 3 2 6 6 C 1.34774 * 120.00371 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99646 * 359.97438 * 6 5 4 8 8 C 1.48184 * 120.00250 * 180.02562 * 6 5 4 9 9 C 1.39032 * 119.68616 * 179.97438 * 8 6 5 10 10 C 1.39458 * 118.95543 * 179.74823 * 9 8 6 11 11 N 1.39189 * 120.83294 * 180.23410 * 10 9 8 12 12 C 1.46493 * 120.00196 * 0.02562 * 11 10 9 13 13 C 1.46499 * 119.99515 * 179.97438 * 11 10 9 14 14 C 1.50700 * 109.47138 * 90.00326 * 13 11 10 15 15 H 1.08001 * 119.99684 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00007 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99719 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47281 * 60.00274 * 18 16 14 20 20 H 1.48503 * 109.46873 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47278 * 299.99981 * 18 16 14 22 22 C 1.39419 * 118.33264 * 0.25347 * 10 9 8 23 23 C 1.38234 * 119.26403 * 0.02562 * 22 10 9 24 24 N 1.31643 * 120.99711 * 0.02562 * 23 22 10 25 25 H 1.08996 * 109.46981 * 60.00271 * 1 2 3 26 26 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47308 * 299.99796 * 1 2 3 28 28 H 1.09003 * 109.47177 * 59.99963 * 3 2 1 29 29 H 1.09003 * 109.46968 * 299.99874 * 3 2 1 30 30 H 1.09002 * 109.46977 * 304.99559 * 4 3 2 31 31 H 1.08997 * 109.47073 * 184.99852 * 4 3 2 32 32 H 0.97006 * 119.99860 * 0.02562 * 5 4 3 33 33 H 1.08002 * 120.52698 * 0.03186 * 9 8 6 34 34 H 1.09008 * 109.47354 * 89.99788 * 12 11 10 35 35 H 1.08998 * 109.47423 * 210.00075 * 12 11 10 36 36 H 1.08999 * 109.47434 * 330.00094 * 12 11 10 37 37 H 1.09003 * 109.46693 * 210.00013 * 13 11 10 38 38 H 1.09002 * 109.47708 * 329.99654 * 13 11 10 39 39 H 0.97000 * 120.00270 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.36852 * 179.97438 * 22 10 9 41 41 H 1.08000 * 119.50039 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 5.2883 0.3557 -1.4762 7 8 6.1066 0.6825 -0.6394 8 6 5.7337 -0.2712 -2.7429 9 6 7.0894 -0.4830 -2.9669 10 6 7.4912 -1.0789 -4.1620 11 7 8.8377 -1.3137 -4.4247 12 6 9.8533 -0.9342 -3.4394 13 6 9.2393 -1.9415 -5.6860 14 6 9.4827 -0.8751 -6.7227 15 1 9.3509 0.1660 -6.4676 16 6 9.8735 -1.2287 -7.9967 17 7 10.0334 -2.4965 -8.3075 18 14 10.1744 0.0931 -9.2819 19 1 11.2526 1.0012 -8.8150 20 1 10.5816 -0.5432 -10.5604 21 1 8.9277 0.8720 -9.4922 22 6 6.5103 -1.4333 -5.0872 23 6 5.1827 -1.1843 -4.7933 24 7 4.8344 -0.6191 -3.6565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8465 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5684 0.8410 31 1 3.9785 2.1767 0.0889 32 1 3.3225 0.3041 -1.9208 33 1 7.8196 -0.1948 -2.2252 34 1 10.0286 -1.7674 -2.7588 35 1 10.7814 -0.6828 -3.9527 36 1 9.5055 -0.0699 -2.8736 37 1 10.1541 -2.5138 -5.5318 38 1 8.4475 -2.6075 -6.0287 39 1 10.3087 -2.7453 -9.2037 40 1 6.7846 -1.8964 -6.0235 41 1 4.4197 -1.4569 -5.5075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865398958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:35 Heat of formation + Delta-G solvation = -61.803518 kcal Electronic energy + Delta-G solvation = -22775.322431 eV Core-core repulsion = 19268.634647 eV Total energy + Delta-G solvation = -3506.687784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55974 -40.19336 -38.81962 -37.87468 -35.78743 -34.86941 -32.60492 -32.05624 -30.66376 -29.76727 -27.23317 -27.05499 -25.74371 -24.46068 -23.33290 -22.79049 -21.23997 -19.08981 -18.63504 -17.97567 -17.61597 -17.35099 -17.06045 -16.51574 -16.25477 -16.20149 -16.01926 -15.62496 -15.49105 -15.09138 -14.80108 -14.67111 -14.42372 -14.02480 -13.75072 -13.42272 -13.14594 -13.08749 -12.96082 -12.67501 -12.65224 -12.35155 -12.11650 -11.99195 -11.94846 -11.36318 -11.24942 -10.64748 -10.62552 -10.47918 -10.27297 -9.96816 -8.59181 -8.11963 -6.38889 -0.19066 0.58314 1.40049 1.40624 1.49017 1.79601 2.03482 2.31631 2.46775 2.83778 3.05126 3.06382 3.29008 3.85819 3.95227 4.04967 4.21132 4.27785 4.31176 4.44749 4.54008 4.58167 4.60658 4.62152 4.66152 4.67935 4.84369 4.87691 4.92868 4.93863 4.98986 5.16258 5.25706 5.38206 5.63186 5.69454 6.02089 6.23284 6.29824 6.41157 6.59404 6.76120 6.95335 7.17425 7.32567 8.81743 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026504 B = 0.002986 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.187345 B = 9375.413895 C = 9786.874216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.053 3.947 4 C 0.115 3.885 5 N -0.696 5.696 6 C 0.575 3.425 7 O -0.570 6.570 8 C 0.099 3.901 9 C -0.208 4.208 10 C 0.245 3.755 11 N -0.612 5.612 12 C 0.090 3.910 13 C 0.262 3.738 14 C -0.546 4.546 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.922 5.922 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.272 1.272 22 C -0.234 4.234 23 C 0.139 3.861 24 N -0.512 5.512 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.419 0.581 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.023 0.977 39 H 0.269 0.731 40 H 0.130 0.870 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.819 6.178 13.448 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.347 5.347 6 C 0.360 3.640 7 O -0.449 6.449 8 C -0.039 4.039 9 C -0.235 4.235 10 C 0.130 3.870 11 N -0.317 5.317 12 C -0.052 4.052 13 C 0.141 3.859 14 C -0.584 4.584 15 H 0.068 0.932 16 C -0.181 4.181 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.197 1.197 22 C -0.260 4.260 23 C -0.018 4.018 24 N -0.228 5.228 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.157 0.843 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.148 0.852 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -16.745 6.257 14.082 22.756 hybrid contribution 1.095 0.226 -1.448 1.829 sum -15.650 6.483 12.634 21.133 Atomic orbital electron populations 1.22909 0.79289 1.03641 1.01109 1.87919 1.21631 1.28426 1.95688 1.22847 0.91035 0.85265 1.03170 1.21613 0.93964 0.99194 0.85979 1.45730 1.06622 1.61096 1.21282 1.17949 0.83133 0.77929 0.84948 1.90722 1.54174 1.53324 1.46668 1.20714 0.89998 0.98762 0.94398 1.21495 0.96935 1.06885 0.98223 1.18271 0.85547 0.90592 0.92605 1.47026 1.02361 1.62651 1.19684 1.21732 0.91566 1.00333 0.91608 1.18967 0.94888 0.92417 0.79613 1.21671 1.46924 0.93491 0.96363 0.93204 1.25700 0.94735 0.97503 1.00212 1.70005 1.47343 1.17259 1.21517 0.85585 0.78770 0.79097 0.78099 1.19750 1.20458 1.19669 1.22048 0.94063 1.08377 1.01520 1.22798 0.94122 0.91884 0.93013 1.67556 1.36845 1.15375 1.03064 0.92971 0.89228 0.92676 0.89068 0.91097 0.91511 0.88895 0.74332 0.84267 0.92191 0.91312 0.90848 0.96403 0.95893 0.92236 0.85219 0.79302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.30 10.65 -148.98 -1.59 -8.89 16 3 C 0.05 0.70 6.07 71.98 0.44 1.14 16 4 C 0.12 2.20 6.06 86.38 0.52 2.72 16 5 N -0.70 -17.34 5.49 -465.65 -2.56 -19.90 16 6 C 0.57 18.67 7.81 86.89 0.68 19.35 16 7 O -0.57 -21.18 16.32 -3.77 -0.06 -21.24 16 8 C 0.10 3.42 6.75 41.83 0.28 3.70 16 9 C -0.21 -7.73 8.78 22.75 0.20 -7.53 16 10 C 0.24 9.83 6.57 38.55 0.25 10.08 16 11 N -0.61 -25.89 2.98 -725.99 -2.16 -28.05 16 12 C 0.09 3.15 10.22 127.77 1.31 4.45 16 13 C 0.26 12.96 4.94 85.63 0.42 13.39 16 14 C -0.55 -29.19 9.39 25.60 0.24 -28.95 16 15 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 16 C 0.02 1.00 5.46 84.66 0.46 1.46 16 17 N -0.92 -51.75 13.29 21.45 0.28 -51.47 16 18 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C -0.23 -8.93 9.27 22.55 0.21 -8.72 16 23 C 0.14 4.39 11.17 84.72 0.95 5.33 16 24 N -0.51 -16.46 9.54 -185.21 -1.77 -18.23 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.42 9.73 7.80 -92.70 -0.72 9.01 16 33 H 0.14 5.04 5.86 -2.91 -0.02 5.02 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 36 H 0.07 2.33 6.26 -2.39 -0.01 2.32 16 37 H 0.02 0.94 8.07 -2.39 -0.02 0.92 16 38 H 0.02 1.20 6.26 -2.39 -0.01 1.18 16 39 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.13 5.37 6.26 -2.91 -0.02 5.35 16 41 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -65.60 350.51 1.71 -63.89 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.32 Total: 21.41 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 7.21 Total: 17.97 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -6.20 Total: -117.64 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.65 Total: -30.13 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.60 1.71 -63.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865398958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.088 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds