Wall clock time and date at job start Tue Mar 31 2020 03:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47131 * 248.60911 * 3 2 1 5 5 C 1.46496 * 120.00283 * 270.00110 * 4 3 2 6 6 C 1.34782 * 120.00190 * 90.00073 * 4 3 2 7 7 O 1.21349 * 119.99727 * 4.77028 * 6 4 3 8 8 C 1.49443 * 120.00139 * 185.04662 * 6 4 3 9 9 O 1.21341 * 120.00490 * 274.78657 * 8 6 4 10 10 N 1.34779 * 119.99811 * 94.78581 * 8 6 4 11 11 C 1.47079 * 120.88044 * 184.85246 * 10 8 6 12 12 C 1.53697 * 108.27710 * 128.75777 * 11 10 8 13 13 N 1.46901 * 109.25596 * 54.08103 * 12 11 10 14 14 C 1.46903 * 110.99760 * 172.61063 * 13 12 11 15 15 C 1.50699 * 109.46885 * 294.30033 * 14 13 12 16 16 H 1.07996 * 120.00620 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00052 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99876 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47092 * 89.99467 * 19 17 15 21 21 H 1.48497 * 109.47095 * 209.99760 * 19 17 15 22 22 H 1.48504 * 109.46649 * 329.99667 * 19 17 15 23 23 C 1.46900 * 111.27015 * 296.75734 * 13 12 11 24 24 C 1.47084 * 120.88383 * 5.13257 * 10 8 6 25 25 H 4.40636 * 5.51397 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47587 * 128.61118 * 3 2 1 27 27 H 1.09000 * 109.47056 * 8.60508 * 3 2 1 28 28 H 1.09002 * 109.47019 * 264.85758 * 5 4 3 29 29 H 1.08999 * 109.47364 * 24.85370 * 5 4 3 30 30 H 1.08999 * 109.47500 * 144.85486 * 5 4 3 31 31 H 1.09003 * 109.62686 * 248.51913 * 11 10 8 32 32 H 1.08996 * 109.62872 * 9.09918 * 11 10 8 33 33 H 1.08994 * 109.64557 * 294.07960 * 12 11 10 34 34 H 1.09000 * 109.42365 * 173.94754 * 12 11 10 35 35 H 1.08995 * 109.47342 * 54.30047 * 14 13 12 36 36 H 1.08999 * 109.46931 * 174.30434 * 14 13 12 37 37 H 0.97003 * 120.00147 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.49242 * 303.14515 * 23 13 12 39 39 H 1.09002 * 109.49302 * 183.06811 * 23 13 12 40 40 H 1.08997 * 109.62385 * 350.89432 * 24 10 8 41 41 H 1.08999 * 109.63133 * 111.47349 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5046 1.2861 5 6 3.3776 1.9379 1.4664 6 6 3.3592 -0.3503 2.3034 7 8 3.2409 -1.5454 2.1290 8 6 3.7483 0.1738 3.6478 9 8 4.9126 0.4125 3.8922 10 7 2.8059 0.3813 4.5887 11 6 3.1509 0.9950 5.8801 12 6 2.1844 2.1632 6.1321 13 7 0.8014 1.6796 6.0244 14 6 -0.1531 2.7204 6.4292 15 6 0.0182 3.0155 7.8971 16 1 0.7613 2.4830 8.4719 17 6 -0.7740 3.9654 8.5063 18 7 -0.6249 4.2226 9.7874 19 14 -2.0601 4.8861 7.5123 20 1 -3.3455 4.1440 7.5578 21 1 -2.2510 6.2426 8.0855 22 1 -1.6059 5.0035 6.1033 23 6 0.5098 1.1966 4.6681 24 6 1.4064 -0.0056 4.3539 25 1 -1.0500 0.0001 -0.0002 26 1 3.0091 0.6421 -0.8030 27 1 3.0098 -1.0153 -0.1538 28 1 4.4297 2.1539 1.2803 29 1 2.7615 2.5021 0.7663 30 1 3.1229 2.2242 2.4868 31 1 3.0515 0.2557 6.6749 32 1 4.1752 1.3660 5.8472 33 1 2.3547 2.9457 5.3926 34 1 2.3529 2.5639 7.1316 35 1 0.0313 3.6267 5.8525 36 1 -1.1695 2.3727 6.2447 37 1 -1.1820 4.8912 10.2159 38 1 0.7034 1.9926 3.9491 39 1 -0.5362 0.8964 4.6060 40 1 1.2770 -0.2963 3.3114 41 1 1.1427 -0.8391 5.0048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867814035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:54 Heat of formation + Delta-G solvation = -6.486416 kcal Electronic energy + Delta-G solvation = -24104.309185 eV Core-core repulsion = 20600.020130 eV Total energy + Delta-G solvation = -3504.289055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.20119 -40.28731 -39.03506 -37.30283 -36.17234 -34.43953 -34.01336 -32.34908 -30.75046 -29.43066 -28.18695 -27.31659 -25.33790 -24.28098 -23.22058 -21.67063 -20.23099 -19.35854 -19.03448 -18.76398 -18.27254 -17.68593 -16.78085 -16.47729 -16.21833 -16.15228 -16.03463 -15.69438 -15.21976 -15.08047 -14.69751 -14.50936 -14.39455 -14.15950 -14.08301 -13.70703 -13.46592 -13.26363 -12.90473 -12.77002 -12.59289 -12.34505 -12.29482 -11.98597 -11.85456 -11.68477 -11.44000 -11.14406 -10.78691 -10.74472 -10.22147 -10.06162 -9.09709 -8.25698 -6.29522 0.70116 0.83458 1.30891 1.37938 1.38806 1.48659 1.74184 1.87774 2.35516 2.36542 2.92454 3.04332 3.11004 3.47078 3.75702 3.89185 4.01582 4.05005 4.14938 4.25179 4.31839 4.40515 4.41398 4.56095 4.60283 4.72926 4.76127 4.79699 4.88035 4.95633 5.04847 5.05334 5.10955 5.21376 5.53405 5.76771 5.84580 6.00523 6.25780 6.47374 6.52456 6.60094 6.64601 6.77608 7.34254 8.90583 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.004248 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.419901 B = 6589.909411 C = 7410.807480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.246 4.246 3 C 0.220 3.780 4 N -0.590 5.590 5 C 0.070 3.930 6 C 0.522 3.478 7 O -0.538 6.538 8 C 0.516 3.484 9 O -0.545 6.545 10 N -0.588 5.588 11 C 0.124 3.876 12 C 0.059 3.941 13 N -0.541 5.541 14 C 0.174 3.826 15 C -0.517 4.517 16 H 0.041 0.959 17 C 0.010 3.990 18 N -0.948 5.948 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.248 1.248 23 C 0.044 3.956 24 C 0.120 3.880 25 H 0.243 0.757 26 H 0.144 0.856 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.079 0.921 35 H -0.009 1.009 36 H 0.035 0.965 37 H 0.266 0.734 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -4.702 -22.777 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.247 4.247 3 C 0.100 3.900 4 N -0.323 5.323 5 C -0.071 4.071 6 C 0.305 3.695 7 O -0.414 6.414 8 C 0.299 3.701 9 O -0.423 6.423 10 N -0.322 5.322 11 C 0.002 3.998 12 C -0.070 4.070 13 N -0.266 5.266 14 C 0.047 3.953 15 C -0.555 4.555 16 H 0.059 0.941 17 C -0.188 4.188 18 N -0.589 5.589 19 Si 0.769 3.231 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.172 1.172 23 C -0.084 4.084 24 C -0.003 4.003 25 H 0.260 0.740 26 H 0.162 0.838 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.009 0.991 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.484 -22.290 23.255 hybrid contribution -0.637 1.145 -0.019 1.311 sum 3.090 -4.339 -22.309 22.936 Atomic orbital electron populations 1.25772 0.96861 0.99241 0.96699 1.23737 0.95461 1.02122 1.03344 1.18601 0.83704 1.03225 0.84438 1.47923 1.63332 1.08959 1.12120 1.22146 1.03745 0.77863 1.03374 1.20186 0.76895 0.86746 0.85698 1.90792 1.51423 1.15769 1.83423 1.20338 0.85875 0.78007 0.85911 1.90771 1.18546 1.51998 1.80946 1.48308 1.09210 1.58837 1.15852 1.21943 0.99336 0.95255 0.83264 1.22338 0.88084 0.94803 1.01767 1.61773 1.02826 1.38548 1.23475 1.19927 0.92274 0.88717 0.94356 1.21253 1.19703 1.20432 0.94110 0.94054 1.25817 0.99516 0.97712 0.95750 1.70048 1.41832 1.34846 1.12130 0.85744 0.79594 0.77888 0.79852 1.19054 1.21217 1.17213 1.22482 1.00535 0.96137 0.89295 1.21969 0.78352 0.97911 1.02047 0.74044 0.83813 0.87803 0.90090 0.87002 0.92532 0.90106 0.88355 0.94932 0.90317 0.99149 0.94718 0.92506 0.94381 0.88257 0.89191 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 19.25 74.32 1.43 -1.04 16 2 C -0.25 -4.12 13.68 31.12 0.43 -3.69 16 3 C 0.22 3.21 5.90 84.57 0.50 3.70 16 4 N -0.59 -11.27 2.83 -859.01 -2.43 -13.70 16 5 C 0.07 1.02 10.23 127.77 1.31 2.33 16 6 C 0.52 14.05 5.48 87.27 0.48 14.53 16 7 O -0.54 -17.17 16.65 -3.24 -0.05 -17.23 16 8 C 0.52 15.43 5.70 87.27 0.50 15.93 16 9 O -0.55 -18.95 16.57 -3.22 -0.05 -19.00 16 10 N -0.59 -16.87 3.00 -818.65 -2.46 -19.33 16 11 C 0.12 3.77 6.61 86.50 0.57 4.34 16 12 C 0.06 2.06 5.47 86.54 0.47 2.54 16 13 N -0.54 -20.09 4.62 -898.89 -4.15 -24.24 16 14 C 0.17 7.62 3.79 85.56 0.32 7.95 16 15 C -0.52 -28.17 8.96 25.60 0.23 -27.94 16 16 H 0.04 2.53 7.37 -2.91 -0.02 2.50 16 17 C 0.01 0.53 5.47 84.66 0.46 0.99 16 18 N -0.95 -57.51 13.96 21.45 0.30 -57.21 16 19 Si 0.95 41.74 27.47 68.60 1.88 43.62 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.25 -10.06 6.54 99.48 0.65 -9.41 16 23 C 0.04 1.24 5.62 86.38 0.49 1.73 16 24 C 0.12 3.09 6.52 86.35 0.56 3.65 16 25 H 0.24 1.97 7.80 -4.42 -0.03 1.94 16 26 H 0.14 0.99 8.07 -2.39 -0.02 0.97 16 27 H 0.10 1.69 7.36 -2.39 -0.02 1.67 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.00 8.03 -2.39 -0.02 0.98 16 30 H 0.06 1.04 6.99 -2.39 -0.02 1.02 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.10 2.92 7.09 -2.39 -0.02 2.90 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 3.20 6.67 -2.39 -0.02 3.19 16 35 H -0.01 -0.40 7.18 -2.39 -0.02 -0.42 16 36 H 0.03 1.47 7.40 -2.39 -0.02 1.46 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 40 H 0.09 2.13 6.37 -2.39 -0.02 2.11 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -72.67 345.89 1.75 -70.92 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.97 Total: 11.16 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 7.75 Total: 25.00 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -8.75 Total: -114.49 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.11 Total: -36.23 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Total: -72.67 1.75 -70.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867814035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.434 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds