Wall clock time and date at job start Tue Mar 31 2020 03:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00088 * 2 1 4 4 C 1.50700 * 109.47345 * 180.02562 * 3 2 1 5 5 N 1.30454 * 125.98610 * 270.32788 * 4 3 2 6 6 N 1.39927 * 108.89497 * 180.15911 * 5 4 3 7 7 C 1.46503 * 125.75313 * 179.80893 * 6 5 4 8 8 C 1.34259 * 108.49407 * 359.54727 * 6 5 4 9 9 C 1.38037 * 107.41688 * 0.26452 * 8 6 5 10 10 C 1.47428 * 126.41813 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00443 * 176.17205 * 10 9 8 12 12 N 1.34778 * 119.99729 * 356.16907 * 10 9 8 13 13 C 1.46504 * 119.99982 * 185.63636 * 12 10 9 14 14 C 1.53002 * 109.46888 * 183.73668 * 13 12 10 15 15 C 1.50692 * 115.55578 * 306.55088 * 14 13 12 16 16 H 1.07996 * 120.00688 * 145.05967 * 15 14 13 17 17 C 1.37876 * 119.99919 * 325.06496 * 15 14 13 18 18 N 1.31523 * 120.00106 * 349.46974 * 17 15 14 19 19 Si 1.86806 * 120.00227 * 169.47201 * 17 15 14 20 20 H 1.48493 * 109.47237 * 59.99825 * 19 17 15 21 21 H 1.48500 * 109.47019 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46889 * 299.99580 * 19 17 15 23 23 C 1.53002 * 117.49523 * 160.87979 * 14 13 12 24 24 C 1.53009 * 117.49472 * 92.22207 * 14 13 12 25 25 H 1.09007 * 109.47187 * 300.00215 * 1 2 3 26 26 H 1.08994 * 109.47394 * 59.99983 * 1 2 3 27 27 H 1.08995 * 109.47232 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47294 * 59.99903 * 3 2 1 29 29 H 1.09004 * 109.46802 * 300.00011 * 3 2 1 30 30 H 1.09000 * 109.47646 * 269.69659 * 7 6 5 31 31 H 1.08999 * 109.47041 * 29.69743 * 7 6 5 32 32 H 1.09005 * 109.47285 * 149.69353 * 7 6 5 33 33 H 1.08003 * 126.29045 * 180.25856 * 8 6 5 34 34 H 0.97006 * 120.00142 * 5.64442 * 12 10 9 35 35 H 1.08990 * 109.47494 * 303.73994 * 13 12 10 36 36 H 1.09005 * 109.46835 * 63.74443 * 13 12 10 37 37 H 0.96995 * 120.00180 * 185.03336 * 18 17 15 38 38 H 1.09002 * 117.49698 * 359.97438 * 23 14 13 39 39 H 1.09003 * 117.49966 * 145.02278 * 23 14 13 40 40 H 1.09001 * 117.49430 * 214.97629 * 24 14 13 41 41 H 1.08997 * 117.49749 * 359.97353 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2766 1.1198 1.0546 6 7 5.6102 1.0203 0.6428 7 6 6.7746 0.9281 1.5272 8 6 5.6425 1.0178 -0.6994 9 6 4.3398 1.1211 -1.1441 10 6 3.8950 1.1569 -2.5492 11 8 2.7076 1.1805 -2.8108 12 7 4.8043 1.1637 -3.5440 13 6 4.3687 1.3238 -4.9336 14 6 5.5775 1.2038 -5.8639 15 6 6.7356 2.1140 -5.5458 16 1 7.7485 1.7756 -5.7068 17 6 6.5021 3.3787 -5.0489 18 7 5.2817 3.8692 -5.0461 19 14 7.9190 4.3958 -4.3799 20 1 8.9232 4.6114 -5.4524 21 1 7.4076 5.7084 -3.9102 22 1 8.5526 3.6763 -3.2459 23 6 5.3066 0.8940 -7.3376 24 6 5.9017 -0.1820 -6.4257 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 7.1445 1.9296 1.7467 31 1 6.4872 0.4353 2.4560 32 1 7.5584 0.3506 1.0370 33 1 6.5254 0.9480 -1.3175 34 1 5.7472 1.0625 -3.3399 35 1 3.6432 0.5482 -5.1786 36 1 3.9092 2.3042 -5.0596 37 1 5.1276 4.7847 -4.7649 38 1 4.2673 0.7753 -7.6441 39 1 5.9663 1.3482 -8.0769 40 1 6.9526 -0.4351 -6.5654 41 1 5.2541 -1.0081 -6.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890357248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:36 Heat of formation + Delta-G solvation = 24.687849 kcal Electronic energy + Delta-G solvation = -23938.851981 eV Core-core repulsion = 20435.914744 eV Total energy + Delta-G solvation = -3502.937237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20308 -38.35397 -37.52512 -36.54198 -33.51168 -32.99388 -32.19357 -30.27972 -28.81228 -26.63350 -25.97871 -25.38675 -24.53368 -22.03698 -21.19922 -20.00316 -19.34338 -19.10855 -17.44347 -16.33612 -16.20363 -15.59829 -15.46728 -15.36202 -14.98584 -14.81786 -14.57811 -14.05464 -13.68302 -13.33992 -13.17612 -12.86305 -12.61473 -12.41913 -12.15065 -11.87879 -11.71672 -11.44991 -11.24336 -11.07537 -10.83799 -10.72554 -10.52521 -10.27357 -9.67363 -9.47914 -9.35007 -9.17014 -8.91050 -8.81129 -8.46047 -8.23271 -7.73811 -6.08375 -4.19439 1.76415 2.27697 2.43674 3.16236 3.25649 3.26550 4.02677 4.16582 4.25231 4.39520 4.51508 4.83902 4.95036 5.01045 5.03047 5.25863 5.26978 5.41621 5.49068 5.54262 5.66259 5.74028 5.79332 5.88965 6.04561 6.10604 6.33690 6.56995 6.58271 6.64710 6.76129 6.91522 6.94069 7.11708 7.29188 7.31348 7.56919 7.66108 7.71444 7.92186 8.31864 8.63149 8.82249 9.25672 9.41026 10.87771 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.005535 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.382421 B = 5057.915690 C = 6180.541188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.145 3.855 4 C 0.124 3.876 5 N -0.289 5.289 6 N -0.364 5.364 7 C 0.099 3.901 8 C 0.093 3.907 9 C -0.256 4.256 10 C 0.582 3.418 11 O -0.560 6.560 12 N -0.687 5.687 13 C 0.165 3.835 14 C 0.038 3.962 15 C -0.501 4.501 16 H 0.061 0.939 17 C 0.077 3.923 18 N -0.864 5.864 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.196 4.196 24 C -0.212 4.212 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.186 0.814 34 H 0.396 0.604 35 H 0.027 0.973 36 H 0.108 0.892 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -4.668 11.282 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.067 3.933 4 C -0.044 4.044 5 N -0.113 5.113 6 N -0.144 5.144 7 C -0.042 4.042 8 C -0.057 4.057 9 C -0.271 4.271 10 C 0.368 3.632 11 O -0.441 6.441 12 N -0.334 5.334 13 C 0.042 3.958 14 C 0.037 3.963 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.128 4.128 18 N -0.499 5.499 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.235 4.235 24 C -0.249 4.249 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.203 0.797 34 H 0.230 0.770 35 H 0.046 0.954 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.825 -4.654 12.549 13.410 hybrid contribution 1.337 0.802 -0.553 1.655 sum 0.512 -3.852 11.996 12.609 Atomic orbital electron populations 1.22695 0.80881 1.02511 0.99996 1.87892 1.19606 1.26893 1.95454 1.20648 0.85030 0.85657 1.01936 1.21880 0.95483 0.97637 0.89356 1.77051 0.86473 1.25012 1.22727 1.48211 1.06043 1.55241 1.04897 1.21947 0.84077 1.03560 0.94609 1.23177 0.99354 0.98344 0.84834 1.20510 0.91824 1.19396 0.95391 1.17100 0.85910 0.77012 0.83191 1.90661 1.16536 1.52645 1.84233 1.45601 1.09492 1.71267 1.07004 1.20983 0.94703 1.01982 0.78162 1.19195 0.95228 0.91592 0.90259 1.20431 0.91172 0.98412 1.43837 0.92112 1.24967 0.95367 0.97509 0.94952 1.69842 1.19539 1.15024 1.45515 0.86709 0.82529 0.79544 0.79562 1.20229 1.21235 1.20175 1.22915 0.98912 1.04553 0.97074 1.22962 0.99517 0.93532 1.08937 0.94454 0.93497 0.89837 0.92502 0.89132 0.90417 0.89105 0.89045 0.79710 0.77021 0.95431 0.87470 0.92526 0.91500 0.90269 0.90713 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.54 10.69 -35.23 -0.38 -6.92 16 3 C 0.15 2.45 5.94 36.01 0.21 2.67 16 4 C 0.12 2.27 6.89 -82.02 -0.57 1.70 16 5 N -0.29 -4.90 12.50 33.90 0.42 -4.48 16 6 N -0.36 -5.15 3.98 -67.60 -0.27 -5.42 16 7 C 0.10 0.85 11.44 59.85 0.68 1.53 16 8 C 0.09 1.42 11.00 -16.56 -0.18 1.24 16 9 C -0.26 -4.84 6.12 -105.07 -0.64 -5.48 16 10 C 0.58 12.66 7.81 -12.52 -0.10 12.56 16 11 O -0.56 -13.59 14.96 5.28 0.08 -13.51 16 12 N -0.69 -14.78 5.26 -61.38 -0.32 -15.11 16 13 C 0.16 3.88 4.75 -4.04 -0.02 3.86 16 14 C 0.04 0.88 2.00 -155.66 -0.31 0.57 16 15 C -0.50 -12.37 8.26 -34.44 -0.28 -12.66 16 16 H 0.06 1.49 7.84 -52.49 -0.41 1.08 16 17 C 0.08 1.92 5.13 -17.82 -0.09 1.83 16 18 N -0.86 -22.70 10.75 55.43 0.60 -22.10 16 19 Si 0.89 19.37 29.55 -169.99 -5.02 14.35 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 23 C -0.20 -4.29 9.96 -26.69 -0.27 -4.55 16 24 C -0.21 -4.39 9.92 -26.68 -0.26 -4.66 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.64 6.64 -51.93 -0.34 1.29 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.19 2.29 7.47 -52.48 -0.39 1.90 16 34 H 0.40 7.94 6.86 -40.82 -0.28 7.66 16 35 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.11 2.86 6.05 -51.93 -0.31 2.55 16 37 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -31.48 350.01 -6.28 -37.76 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.95 Total: 9.96 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.71 Total: 0.18 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.43 Total: -47.11 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.30 Total: -20.43 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.48 -6.28 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.448 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds