Wall clock time and date at job start Tue Mar 31 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.95928 * 2 1 4 4 C 1.33241 * 109.82768 * 180.12890 * 3 2 1 5 5 C 1.50700 * 125.52700 * 179.85895 * 4 3 2 6 6 N 1.46502 * 109.47031 * 269.71725 * 5 4 3 7 7 C 1.34775 * 120.00038 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00124 * 5.07284 * 7 6 5 9 9 N 1.34776 * 120.00225 * 185.07564 * 7 6 5 10 10 C 1.46923 * 120.62907 * 354.95834 * 9 7 6 11 11 C 1.53197 * 108.89200 * 126.46290 * 10 9 7 12 12 C 1.53040 * 109.31348 * 54.56697 * 11 10 9 13 13 C 1.53039 * 109.53657 * 298.63593 * 12 11 10 14 14 H 1.08997 * 109.49768 * 301.37853 * 13 12 11 15 15 C 1.50698 * 109.49846 * 181.31299 * 13 12 11 16 16 H 1.07998 * 119.99944 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00338 * 179.97438 * 15 13 12 18 18 N 1.31526 * 119.99760 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00412 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47290 * 120.00069 * 19 17 15 22 22 H 1.48498 * 109.47502 * 240.00146 * 19 17 15 23 23 C 1.46957 * 120.65827 * 174.77982 * 9 7 6 24 24 N 1.30710 * 108.94687 * 359.59364 * 4 3 2 25 25 N 1.34429 * 125.96093 * 179.68156 * 2 1 3 26 26 H 0.96995 * 126.82085 * 0.05979 * 25 2 1 27 27 H 1.09012 * 109.46707 * 270.32409 * 1 2 3 28 28 H 1.08994 * 109.47509 * 30.32046 * 1 2 3 29 29 H 1.08994 * 109.47547 * 150.32838 * 1 2 3 30 30 H 1.09001 * 109.47598 * 149.71456 * 5 4 3 31 31 H 1.09000 * 109.47310 * 29.71540 * 5 4 3 32 32 H 0.96994 * 120.00055 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.58658 * 6.61086 * 10 9 7 34 34 H 1.08998 * 109.59373 * 246.32407 * 10 9 7 35 35 H 1.09002 * 109.49551 * 174.51567 * 11 10 9 36 36 H 1.08996 * 109.49529 * 294.61341 * 11 10 9 37 37 H 1.09008 * 109.45898 * 58.65120 * 12 11 10 38 38 H 1.08995 * 109.46264 * 178.62630 * 12 11 10 39 39 H 0.96998 * 119.99920 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46953 * 113.74657 * 23 9 7 41 41 H 1.09001 * 109.71186 * 353.46537 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7372 1.6236 -0.0068 6 7 5.1209 1.9198 -1.3893 7 6 6.1607 2.7401 -1.6390 8 8 6.8373 3.1610 -0.7206 9 7 6.4504 3.0942 -2.9068 10 6 5.7129 2.5086 -4.0346 11 6 5.1541 3.6403 -4.9029 12 6 6.2954 4.5729 -5.3149 13 6 6.9283 5.1901 -4.0656 14 1 6.1698 5.7377 -3.5062 15 6 8.0308 6.1330 -4.4737 16 1 8.2575 6.2782 -5.5195 17 6 8.7492 6.8110 -3.5119 18 7 8.4727 6.6345 -2.2382 19 14 10.1154 7.9803 -4.0177 20 1 10.2257 8.0016 -5.4985 21 1 9.8052 9.3465 -3.5253 22 1 11.4008 7.5229 -3.4317 23 6 7.5071 4.0760 -3.1878 24 7 3.6194 -0.6167 0.0041 25 7 2.2964 -1.0881 0.0060 26 1 2.0093 -2.0145 0.0104 27 1 -0.3633 0.0058 1.0278 28 1 -0.3634 0.8870 -0.5188 29 1 -0.3634 -0.8928 -0.5087 30 1 5.5740 1.1536 0.5099 31 1 4.4698 2.5496 0.5023 32 1 4.6267 1.5254 -2.1248 33 1 4.8923 1.8984 -3.6572 34 1 6.3851 1.8898 -4.6290 35 1 4.6888 3.2191 -5.7941 36 1 4.4122 4.2019 -4.3354 37 1 7.0490 4.0054 -5.8610 38 1 5.9045 5.3654 -5.9530 39 1 8.9780 7.1118 -1.5616 40 1 8.3277 3.5865 -3.7123 41 1 7.8727 4.5003 -2.2527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898351412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:12 Heat of formation + Delta-G solvation = 57.404035 kcal Electronic energy + Delta-G solvation = -23485.641809 eV Core-core repulsion = 20016.416003 eV Total energy + Delta-G solvation = -3469.225806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.45663 -39.61719 -36.88187 -34.89702 -33.41130 -32.75436 -32.56837 -31.62513 -29.71478 -28.68830 -27.01596 -24.99419 -24.02608 -21.83942 -21.71207 -20.78598 -20.06424 -18.80451 -18.20851 -17.46994 -16.30364 -16.10470 -15.47338 -15.10462 -14.56859 -14.55716 -14.09925 -13.71097 -13.62999 -13.47395 -13.23656 -13.04818 -12.84398 -12.55603 -12.41056 -12.15622 -11.93080 -11.83445 -10.94888 -10.85634 -10.49075 -10.42920 -10.33413 -10.30424 -10.17178 -9.86238 -9.81958 -9.38407 -9.04324 -8.88761 -8.72627 -8.36182 -7.57945 -5.92558 -4.01351 1.22491 2.27580 2.42162 3.34057 3.40693 3.43553 3.46361 3.69567 3.91164 4.26760 4.44770 4.46229 4.52955 4.93129 4.99663 5.33719 5.34143 5.37550 5.55323 5.60432 5.69283 5.72368 5.93976 6.03475 6.10065 6.22120 6.37321 6.64213 6.70170 6.72407 6.76530 6.86727 7.04856 7.12245 7.40772 7.55162 7.79897 7.80986 7.99666 8.12793 8.47308 8.62889 9.02398 9.29447 9.63983 11.12636 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.003298 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.775256 B = 8488.755211 C = 8946.232716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.525 5.525 4 C 0.221 3.779 5 C 0.236 3.764 6 N -0.751 5.751 7 C 0.706 3.294 8 O -0.581 6.581 9 N -0.621 5.621 10 C 0.116 3.884 11 C -0.133 4.133 12 C -0.109 4.109 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.878 5.878 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.130 3.870 24 N -0.297 5.297 25 N -0.483 5.483 26 H 0.440 0.560 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.392 0.608 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 -16.512 1.900 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.255 5.255 4 C -0.062 4.062 5 C 0.109 3.891 6 N -0.412 5.412 7 C 0.407 3.593 8 O -0.458 6.458 9 N -0.357 5.357 10 C -0.008 4.008 11 C -0.172 4.172 12 C -0.147 4.147 13 C 0.020 3.980 14 H 0.047 0.953 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.516 5.516 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.009 3.991 24 N -0.127 5.127 25 N -0.202 5.202 26 H 0.286 0.714 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.228 0.772 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.508 -16.113 2.787 22.536 hybrid contribution 0.004 -0.348 -0.612 0.704 sum -15.504 -16.461 2.175 22.717 Atomic orbital electron populations 1.20410 0.83467 1.05129 1.04669 1.24488 0.96755 0.82759 0.95824 1.70443 1.01308 1.29380 1.24358 1.24308 0.93406 0.90022 0.98473 1.19141 0.89693 0.95676 0.84600 1.45139 1.35538 1.53428 1.07067 1.15808 0.80409 0.79092 0.83956 1.90929 1.52243 1.59376 1.43290 1.47760 1.39626 1.45682 1.02637 1.21478 0.94940 0.95417 0.88970 1.21948 0.99326 0.97443 0.98453 1.21611 0.95806 0.97290 0.99990 1.18998 0.95787 0.92459 0.90797 0.95263 1.21104 1.17429 1.24421 0.92933 0.92362 1.25063 0.97310 0.96682 0.95020 1.69909 1.40371 1.41795 0.99499 0.86548 0.82092 0.80841 0.78579 1.19858 1.21066 1.20992 1.22194 0.86091 0.86581 1.04192 1.78091 0.96551 1.12431 1.25639 1.48050 1.04345 1.10116 1.57689 0.71437 0.88899 0.88132 0.89850 0.89269 0.88802 0.77230 0.92397 0.92148 0.92427 0.92089 0.93222 0.93079 0.92715 0.94281 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.51 36.01 0.38 0.07 16 2 C 0.28 2.50 8.24 -155.70 -1.28 1.21 16 3 N -0.53 -6.78 11.19 -8.16 -0.09 -6.87 16 4 C 0.22 3.04 7.51 -156.86 -1.18 1.86 16 5 C 0.24 3.61 6.30 -5.19 -0.03 3.57 16 6 N -0.75 -12.56 5.46 -66.41 -0.36 -12.93 16 7 C 0.71 15.14 8.30 -86.92 -0.72 14.42 16 8 O -0.58 -14.94 15.79 5.28 0.08 -14.85 16 9 N -0.62 -13.06 2.98 -178.47 -0.53 -13.59 16 10 C 0.12 1.90 6.43 -3.71 -0.02 1.88 16 11 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 12 C -0.11 -2.22 5.11 -26.69 -0.14 -2.35 16 13 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -14.30 8.56 -34.44 -0.29 -14.59 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -26.05 11.40 55.43 0.63 -25.42 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 C 0.13 3.25 5.38 -3.69 -0.02 3.23 16 24 N -0.30 -3.77 12.80 32.42 0.41 -3.36 16 25 N -0.48 -4.11 7.45 32.62 0.24 -3.87 16 26 H 0.44 1.97 8.96 -182.34 -1.63 0.33 16 27 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.39 5.78 5.92 -40.82 -0.24 5.54 16 33 H 0.06 0.79 5.57 -51.93 -0.29 0.50 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.12 3.59 5.17 -51.93 -0.27 3.32 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -35.41 337.27 -10.37 -45.78 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.05 Total: 4.14 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -3.77 Total: 9.35 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: 0.30 Total: -66.04 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.41 -10.37 -45.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898351412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.186 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds