Wall clock time and date at job start Tue Mar 31 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.95928 * 2 1 4 4 C 1.33241 * 109.82768 * 180.12890 * 3 2 1 5 5 C 1.50700 * 125.52700 * 179.85895 * 4 3 2 6 6 N 1.46502 * 109.47031 * 269.71725 * 5 4 3 7 7 C 1.34775 * 120.00038 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00124 * 5.07284 * 7 6 5 9 9 N 1.34776 * 120.00225 * 185.07564 * 7 6 5 10 10 C 1.46923 * 120.62907 * 354.95834 * 9 7 6 11 11 C 1.53197 * 108.89200 * 126.46290 * 10 9 7 12 12 C 1.53040 * 109.31348 * 54.56697 * 11 10 9 13 13 C 1.53039 * 109.53657 * 298.63593 * 12 11 10 14 14 H 1.08997 * 109.49768 * 301.37853 * 13 12 11 15 15 C 1.50698 * 109.49846 * 181.31299 * 13 12 11 16 16 H 1.07998 * 119.99944 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00338 * 179.97438 * 15 13 12 18 18 N 1.31526 * 119.99760 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00412 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47290 * 120.00069 * 19 17 15 22 22 H 1.48498 * 109.47502 * 240.00146 * 19 17 15 23 23 C 1.46957 * 120.65827 * 174.77982 * 9 7 6 24 24 N 1.30710 * 108.94687 * 359.59364 * 4 3 2 25 25 N 1.34429 * 125.96093 * 179.68156 * 2 1 3 26 26 H 0.96995 * 126.82085 * 0.05979 * 25 2 1 27 27 H 1.09012 * 109.46707 * 270.32409 * 1 2 3 28 28 H 1.08994 * 109.47509 * 30.32046 * 1 2 3 29 29 H 1.08994 * 109.47547 * 150.32838 * 1 2 3 30 30 H 1.09001 * 109.47598 * 149.71456 * 5 4 3 31 31 H 1.09000 * 109.47310 * 29.71540 * 5 4 3 32 32 H 0.96994 * 120.00055 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.58658 * 6.61086 * 10 9 7 34 34 H 1.08998 * 109.59373 * 246.32407 * 10 9 7 35 35 H 1.09002 * 109.49551 * 174.51567 * 11 10 9 36 36 H 1.08996 * 109.49529 * 294.61341 * 11 10 9 37 37 H 1.09008 * 109.45898 * 58.65120 * 12 11 10 38 38 H 1.08995 * 109.46264 * 178.62630 * 12 11 10 39 39 H 0.96998 * 119.99920 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46953 * 113.74657 * 23 9 7 41 41 H 1.09001 * 109.71186 * 353.46537 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7372 1.6236 -0.0068 6 7 5.1209 1.9198 -1.3893 7 6 6.1607 2.7401 -1.6390 8 8 6.8373 3.1610 -0.7206 9 7 6.4504 3.0942 -2.9068 10 6 5.7129 2.5086 -4.0346 11 6 5.1541 3.6403 -4.9029 12 6 6.2954 4.5729 -5.3149 13 6 6.9283 5.1901 -4.0656 14 1 6.1698 5.7377 -3.5062 15 6 8.0308 6.1330 -4.4737 16 1 8.2575 6.2782 -5.5195 17 6 8.7492 6.8110 -3.5119 18 7 8.4727 6.6345 -2.2382 19 14 10.1154 7.9803 -4.0177 20 1 10.2257 8.0016 -5.4985 21 1 9.8052 9.3465 -3.5253 22 1 11.4008 7.5229 -3.4317 23 6 7.5071 4.0760 -3.1878 24 7 3.6194 -0.6167 0.0041 25 7 2.2964 -1.0881 0.0060 26 1 2.0093 -2.0145 0.0104 27 1 -0.3633 0.0058 1.0278 28 1 -0.3634 0.8870 -0.5188 29 1 -0.3634 -0.8928 -0.5087 30 1 5.5740 1.1536 0.5099 31 1 4.4698 2.5496 0.5023 32 1 4.6267 1.5254 -2.1248 33 1 4.8923 1.8984 -3.6572 34 1 6.3851 1.8898 -4.6290 35 1 4.6888 3.2191 -5.7941 36 1 4.4122 4.2019 -4.3354 37 1 7.0490 4.0054 -5.8610 38 1 5.9045 5.3654 -5.9530 39 1 8.9780 7.1118 -1.5616 40 1 8.3277 3.5865 -3.7123 41 1 7.8727 4.5003 -2.2527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898351412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:11 Heat of formation + Delta-G solvation = 31.777919 kcal Electronic energy + Delta-G solvation = -23486.753040 eV Core-core repulsion = 20016.416003 eV Total energy + Delta-G solvation = -3470.337037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.29787 -41.27867 -38.56256 -36.30039 -35.25843 -33.86552 -33.45705 -33.22107 -31.50696 -29.46896 -28.18470 -26.93219 -25.68513 -23.45866 -22.58996 -21.80453 -21.70633 -20.40885 -19.26662 -18.84275 -18.20410 -17.48933 -16.69214 -16.57830 -16.42888 -15.71652 -15.38500 -15.20790 -15.16972 -14.56813 -14.45295 -14.26901 -14.11145 -13.71215 -13.64697 -13.57112 -13.45058 -12.88781 -12.78586 -12.64610 -12.26108 -12.19313 -11.87264 -11.62268 -11.38546 -11.19828 -11.19368 -10.94970 -10.83332 -10.62439 -10.49571 -10.27538 -9.28517 -8.07190 -6.24328 0.38884 1.36958 1.43101 1.43669 1.55762 1.62032 2.02378 2.22406 2.44738 2.83686 3.05270 3.22240 3.44452 3.83083 4.01732 4.15375 4.27048 4.39467 4.45373 4.60537 4.72565 4.73010 4.74146 4.81465 4.85665 5.01900 5.11536 5.12454 5.20070 5.27572 5.27981 5.32019 5.37574 5.59043 5.64171 5.89145 5.97950 6.13752 6.15484 6.38193 6.88739 6.96997 7.05329 7.45445 7.61483 8.96471 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028659 B = 0.003298 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.775256 B = 8488.755211 C = 8946.232716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.292 3.708 3 N -0.563 5.563 4 C 0.211 3.789 5 C 0.239 3.761 6 N -0.728 5.728 7 C 0.700 3.300 8 O -0.633 6.633 9 N -0.625 5.625 10 C 0.111 3.889 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.038 3.962 14 H -0.013 1.013 15 C -0.534 4.534 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.915 5.915 19 Si 0.959 3.041 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.144 3.856 24 N -0.317 5.317 25 N -0.466 5.466 26 H 0.459 0.541 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.405 0.595 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.259 0.741 40 H 0.035 0.965 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.848 -18.567 0.083 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.014 3.986 3 N -0.294 5.294 4 C -0.073 4.073 5 C 0.112 3.888 6 N -0.389 5.389 7 C 0.402 3.598 8 O -0.514 6.514 9 N -0.361 5.361 10 C -0.011 4.011 11 C -0.163 4.163 12 C -0.141 4.141 13 C 0.018 3.982 14 H 0.005 0.995 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.784 3.216 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.021 3.979 24 N -0.149 5.149 25 N -0.187 5.187 26 H 0.309 0.691 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.745 -18.241 0.924 25.465 hybrid contribution 0.558 0.210 -0.023 0.597 sum -17.187 -18.031 0.902 24.926 Atomic orbital electron populations 1.20690 0.79713 1.06759 1.06235 1.25322 0.98349 0.81670 0.93240 1.70403 1.01246 1.31553 1.26214 1.23792 0.93253 0.90068 1.00145 1.19011 0.90645 0.95737 0.83394 1.44866 1.33856 1.51873 1.08303 1.16003 0.80931 0.79370 0.83521 1.90889 1.54208 1.61382 1.44948 1.47665 1.39339 1.45075 1.03979 1.21828 0.95908 0.95736 0.87657 1.21901 0.97636 0.96612 1.00142 1.21498 0.97143 0.98096 0.97405 1.18926 0.94401 0.92170 0.92653 0.99515 1.21536 1.17851 1.24742 0.93105 0.91868 1.25920 0.99821 0.98487 0.94896 1.70111 1.41650 1.42911 1.00659 0.85496 0.78842 0.78429 0.78825 1.18376 1.20907 1.20927 1.21622 0.87159 0.87387 1.01689 1.77978 0.99032 1.11893 1.25958 1.47956 1.02882 1.11243 1.56640 0.69138 0.87150 0.88231 0.86458 0.89755 0.90097 0.75728 0.89162 0.90084 0.87759 0.93200 0.92312 0.92831 0.93168 0.94673 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 71.24 0.75 0.43 16 2 C 0.29 4.46 8.24 138.23 1.14 5.60 16 3 N -0.56 -13.90 11.19 -179.73 -2.01 -15.91 16 4 C 0.21 5.68 7.51 138.63 1.04 6.72 16 5 C 0.24 7.53 6.30 85.63 0.54 8.07 16 6 N -0.73 -24.45 5.46 -482.29 -2.63 -27.09 16 7 C 0.70 30.95 8.30 179.06 1.49 32.44 16 8 O -0.63 -34.48 15.79 -4.00 -0.06 -34.54 16 9 N -0.62 -26.56 2.98 -836.81 -2.49 -29.06 16 10 C 0.11 3.36 6.43 86.36 0.56 3.92 16 11 C -0.12 -3.81 6.08 30.67 0.19 -3.63 16 12 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 13 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 14 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 15 C -0.53 -29.91 8.56 25.60 0.22 -29.69 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.46 5.30 84.65 0.45 0.91 16 18 N -0.91 -56.91 11.40 21.45 0.24 -56.67 16 19 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.14 7.48 5.38 86.36 0.46 7.94 16 24 N -0.32 -7.65 12.80 -51.34 -0.66 -8.31 16 25 N -0.47 -6.75 7.45 -50.71 -0.38 -7.13 16 26 H 0.46 2.64 8.96 -213.10 -1.91 0.73 16 27 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.40 11.35 5.92 -92.71 -0.55 10.80 16 33 H 0.09 2.16 5.57 -2.39 -0.01 2.15 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.08 4.72 5.17 -2.39 -0.01 4.71 16 Total: -1.00 -82.65 337.27 -0.40 -83.05 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -1.39 Total: 17.77 kcal Atomic # 6 Polarization: 23.78 SS G_CDS: 6.96 Total: 30.73 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -7.93 Total: -144.16 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.06 Total: -34.54 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -82.65 -0.40 -83.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898351412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.824 kcal (2) G-P(sol) polarization free energy of solvation -82.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds