Wall clock time and date at job start Tue Mar 31 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.33350 * 117.94719 * 2 1 4 4 O 1.21279 * 118.24536 * 2.19653 * 3 2 1 5 5 C 1.50174 * 123.50651 * 182.22074 * 3 2 1 6 6 C 1.53069 * 109.89673 * 342.42167 * 5 3 2 7 7 C 1.53337 * 108.42460 * 48.89505 * 6 5 3 8 8 C 1.45756 * 117.94499 * 180.02562 * 2 1 3 9 9 H 1.09001 * 109.13730 * 281.12854 * 8 2 1 10 10 C 1.50698 * 109.30358 * 40.61651 * 8 2 1 11 11 O 1.21283 * 120.00124 * 32.70389 * 10 8 2 12 12 N 1.34779 * 120.00049 * 212.71034 * 10 8 2 13 13 C 1.46501 * 119.99882 * 5.18348 * 12 10 8 14 14 C 1.50703 * 109.47074 * 270.00252 * 13 12 10 15 15 H 1.07998 * 119.99911 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99616 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00423 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99803 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47234 * 180.02562 * 18 16 14 20 20 H 1.48508 * 109.46745 * 299.99822 * 18 16 14 21 21 H 1.48495 * 109.47086 * 59.99738 * 18 16 14 22 22 C 1.46498 * 119.99791 * 185.18913 * 12 10 8 23 23 C 1.52997 * 109.47184 * 265.16344 * 22 12 10 24 24 C 1.47197 * 109.47282 * 184.96421 * 23 22 12 25 25 N 7.78966 * 66.23571 * 203.08892 * 2 1 3 26 26 H 1.09000 * 109.47191 * 269.99808 * 1 2 3 27 27 H 1.09002 * 109.47156 * 30.00147 * 1 2 3 28 28 H 1.09004 * 109.47180 * 149.99766 * 1 2 3 29 29 H 1.09007 * 109.40255 * 222.28812 * 5 3 2 30 30 H 1.09008 * 109.33258 * 102.50751 * 5 3 2 31 31 H 1.09004 * 109.66862 * 289.16584 * 6 5 3 32 32 H 1.08998 * 109.70743 * 168.65070 * 6 5 3 33 33 H 1.09000 * 109.60595 * 172.71682 * 7 6 5 34 34 H 1.09005 * 109.73799 * 52.31037 * 7 6 5 35 35 H 1.09002 * 109.46824 * 150.00386 * 13 12 10 36 36 H 1.08994 * 109.47219 * 30.00599 * 13 12 10 37 37 H 0.97009 * 119.99868 * 359.97438 * 17 16 14 38 38 H 1.09004 * 109.47489 * 25.16454 * 22 12 10 39 39 H 1.09007 * 109.46858 * 145.16468 * 22 12 10 40 40 H 1.09005 * 109.47235 * 304.96096 * 23 22 12 41 41 H 1.08996 * 109.46982 * 64.96146 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4159 2.1853 0.0409 5 6 3.5838 1.3239 -0.0485 6 6 4.2493 0.0012 0.3397 7 6 3.5949 -1.1259 -0.4681 8 6 2.1480 -1.2876 -0.0006 9 1 2.1399 -1.6969 1.0097 10 6 1.4278 -2.2332 -0.9269 11 8 0.8775 -1.8074 -1.9203 12 7 1.3950 -3.5521 -0.6514 13 6 1.9602 -4.0524 0.6042 14 6 3.4155 -4.3874 0.4017 15 1 3.8736 -4.2419 -0.5654 16 6 4.1620 -4.8798 1.4511 17 7 3.6040 -5.0576 2.6286 18 14 5.9661 -5.2945 1.2004 19 1 6.5387 -5.8029 2.4727 20 1 6.0931 -6.3364 0.1498 21 1 6.7005 -4.0745 0.7790 22 6 0.7943 -4.4854 -1.6075 23 6 -0.6656 -4.7376 -1.2256 24 6 -1.2348 -5.7645 -2.1134 25 7 -1.6740 -6.5581 -2.7958 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 3.8943 2.1034 0.6473 30 1 3.8869 1.5989 -1.0589 31 1 4.1087 -0.1814 1.4051 32 1 5.3144 0.0451 0.1123 33 1 4.1384 -2.0564 -0.3042 34 1 3.6102 -0.8755 -1.5289 35 1 1.4210 -4.9475 0.9142 36 1 1.8674 -3.2872 1.3748 37 1 2.6673 -4.8419 2.7590 38 1 0.8392 -4.0583 -2.6094 39 1 1.3426 -5.4274 -1.5892 40 1 -0.7168 -5.0817 -0.1926 41 1 -1.2331 -3.8128 -1.3290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906377975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:10 Heat of formation + Delta-G solvation = -46.286704 kcal Electronic energy + Delta-G solvation = -24572.924274 eV Core-core repulsion = 21066.909349 eV Total energy + Delta-G solvation = -3506.014925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81175 -39.18343 -36.92730 -36.00254 -35.60841 -33.83353 -33.27229 -31.54220 -29.55620 -27.04627 -26.88558 -25.45018 -23.58744 -23.09324 -22.04984 -19.34915 -18.38722 -17.67321 -17.39133 -16.75262 -16.46086 -16.30021 -15.53523 -15.03373 -14.84809 -14.48300 -14.09641 -13.97777 -13.72621 -13.63120 -13.36234 -13.16554 -12.79249 -12.51476 -12.36900 -12.26070 -11.98863 -11.93607 -11.77358 -11.61486 -11.27772 -11.19568 -10.92685 -10.84347 -10.72452 -10.62797 -10.30215 -9.81299 -9.51553 -9.37249 -8.72857 -8.41372 -8.07714 -6.69648 -4.48381 2.62560 2.78185 2.82526 2.85499 3.14995 3.24560 3.28370 3.44835 3.52746 4.17758 4.26619 4.67959 4.73981 4.91237 4.96270 5.02426 5.06047 5.14759 5.21900 5.42980 5.47580 5.50810 5.65636 5.73856 5.82828 5.84828 5.88598 6.01936 6.03582 6.08010 6.21121 6.30304 6.42274 6.49031 6.58435 6.99201 7.57646 7.58012 7.61000 7.76072 8.12041 8.30301 8.44360 8.52032 9.22424 10.66402 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.007625 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.897982 B = 3671.188790 C = 6083.079962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.585 5.585 3 C 0.520 3.480 4 O -0.564 6.564 5 C -0.134 4.134 6 C -0.120 4.120 7 C -0.127 4.127 8 C 0.131 3.869 9 H 0.107 0.893 10 C 0.512 3.488 11 O -0.554 6.554 12 N -0.585 5.585 13 C 0.221 3.779 14 C -0.622 4.622 15 H 0.060 0.940 16 C 0.030 3.970 17 N -0.898 5.898 18 Si 1.063 2.937 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.284 1.284 22 C 0.125 3.875 23 C -0.045 4.045 24 C 0.219 3.781 25 N -0.445 5.445 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 5.866 -1.971 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.317 5.317 3 C 0.309 3.691 4 O -0.444 6.444 5 C -0.174 4.174 6 C -0.157 4.157 7 C -0.165 4.165 8 C 0.024 3.976 9 H 0.124 0.876 10 C 0.299 3.701 11 O -0.433 6.433 12 N -0.315 5.315 13 C 0.101 3.899 14 C -0.660 4.660 15 H 0.078 0.922 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.890 3.110 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.210 1.210 22 C 0.000 4.000 23 C -0.086 4.086 24 C -0.099 4.099 25 N -0.122 5.122 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.310 4.817 -2.686 5.524 hybrid contribution -1.179 0.599 -0.434 1.392 sum -1.489 5.416 -3.120 6.425 Atomic orbital electron populations 1.21811 0.79614 1.04193 1.01289 1.47022 1.07524 1.05223 1.71925 1.20130 0.91018 0.82370 0.75573 1.90672 1.66713 1.35641 1.51365 1.21687 0.91092 1.00072 1.04549 1.21638 1.00298 0.92708 1.01089 1.21902 0.92378 1.02204 1.00004 1.21066 0.93274 0.82437 1.00785 0.87584 1.20552 0.80043 0.83192 0.86268 1.90657 1.46639 1.77153 1.28866 1.48032 1.56618 1.05275 1.21611 1.19689 0.94996 0.95076 0.80091 1.22239 0.94667 1.49292 0.99838 0.92199 1.25753 1.06049 0.93518 0.92361 1.70853 1.14772 1.44047 1.23586 0.83602 0.74378 0.76883 0.76133 1.20609 1.21290 1.21014 1.21169 0.89901 0.95004 0.93947 1.19740 0.97516 0.94200 0.97156 1.28999 0.93315 0.93866 0.93736 1.81156 1.09526 1.11089 1.10461 0.93126 0.90527 0.90281 0.88372 0.88456 0.90620 0.90107 0.86562 0.91226 0.95011 0.95006 0.92016 0.89588 0.89234 0.87044 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 9.67 59.85 0.58 1.69 16 2 N -0.59 -9.35 2.95 -176.51 -0.52 -9.87 16 3 C 0.52 8.44 7.47 -11.87 -0.09 8.36 16 4 O -0.56 -10.80 16.21 5.56 0.09 -10.71 16 5 C -0.13 -1.67 6.03 -28.10 -0.17 -1.84 16 6 C -0.12 -1.46 6.03 -26.52 -0.16 -1.62 16 7 C -0.13 -1.86 5.28 -26.60 -0.14 -2.00 16 8 C 0.13 2.07 2.67 -69.53 -0.19 1.88 16 9 H 0.11 1.74 5.72 -51.93 -0.30 1.44 16 10 C 0.51 8.61 5.57 -10.99 -0.06 8.55 16 11 O -0.55 -10.28 14.54 5.55 0.08 -10.20 16 12 N -0.59 -9.52 2.46 -175.06 -0.43 -9.95 16 13 C 0.22 4.11 4.24 -5.19 -0.02 4.09 16 14 C -0.62 -13.33 7.99 -34.44 -0.28 -13.61 16 15 H 0.06 1.31 7.51 -52.49 -0.39 0.92 16 16 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 17 N -0.90 -22.39 13.65 55.43 0.76 -21.63 16 18 Si 1.06 21.12 29.90 -169.99 -5.08 16.04 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.29 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 C 0.13 1.77 5.38 -4.04 -0.02 1.75 16 23 C -0.04 -0.52 6.02 -29.52 -0.18 -0.69 16 24 C 0.22 2.93 15.43 -20.79 -0.32 2.61 16 25 N -0.45 -7.07 18.53 42.12 0.78 -6.29 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.21 7.20 -51.93 -0.37 0.84 16 28 H 0.08 1.20 5.43 -51.93 -0.28 0.92 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.10 8.14 -51.92 -0.42 0.67 16 31 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.12 1.88 6.32 -51.93 -0.33 1.55 16 34 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.03 0.61 5.75 -51.93 -0.30 0.31 16 37 H 0.27 6.54 7.22 -40.82 -0.29 6.24 16 38 H 0.09 1.26 7.36 -51.93 -0.38 0.87 16 39 H 0.09 1.30 8.11 -51.92 -0.42 0.88 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -28.44 340.46 -6.00 -34.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.66 Total: 3.29 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.14 Total: 9.76 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.59 Total: -47.74 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.08 Total: 16.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.44 -6.00 -34.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906377975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.852 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds