Wall clock time and date at job start Tue Mar 31 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.33353 * 117.94871 * 2 1 4 4 O 1.21280 * 118.24709 * 357.79393 * 3 2 1 5 5 C 1.50177 * 123.51192 * 177.79951 * 3 2 1 6 6 C 1.53062 * 109.89728 * 17.54106 * 5 3 2 7 7 C 1.53349 * 108.42670 * 311.11937 * 6 5 3 8 8 C 1.45759 * 117.94789 * 179.97438 * 2 1 3 9 9 H 1.09005 * 109.12859 * 78.86866 * 8 2 1 10 10 C 1.50692 * 109.29796 * 319.38915 * 8 2 1 11 11 O 1.21279 * 120.00500 * 330.15178 * 10 8 2 12 12 N 1.34784 * 119.99588 * 150.15547 * 10 8 2 13 13 C 1.46498 * 120.00253 * 5.14635 * 12 10 8 14 14 C 1.50703 * 109.46822 * 89.99934 * 13 12 10 15 15 H 1.07998 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99607 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00404 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99435 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47627 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47004 * 120.00512 * 18 16 14 21 21 H 1.48502 * 109.46895 * 240.00271 * 18 16 14 22 22 C 1.46497 * 119.99901 * 185.15156 * 12 10 8 23 23 C 1.52998 * 109.47586 * 87.45594 * 22 12 10 24 24 C 1.47193 * 109.47496 * 176.52708 * 23 22 12 25 25 N 7.62872 * 61.90528 * 159.65401 * 2 1 3 26 26 H 1.08995 * 109.47229 * 270.02374 * 1 2 3 27 27 H 1.08995 * 109.47147 * 30.02491 * 1 2 3 28 28 H 1.08998 * 109.47455 * 150.02252 * 1 2 3 29 29 H 1.08999 * 109.38149 * 257.41991 * 5 3 2 30 30 H 1.09005 * 109.41429 * 137.67938 * 5 3 2 31 31 H 1.09001 * 109.67640 * 191.38543 * 6 5 3 32 32 H 1.08999 * 109.67674 * 70.84807 * 6 5 3 33 33 H 1.08997 * 109.60509 * 187.28882 * 7 6 5 34 34 H 1.09004 * 109.59759 * 307.61326 * 7 6 5 35 35 H 1.08999 * 109.47523 * 210.00122 * 13 12 10 36 36 H 1.09002 * 109.47217 * 330.00263 * 13 12 10 37 37 H 0.97001 * 120.00518 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.47307 * 207.45915 * 22 12 10 39 39 H 1.09000 * 109.47031 * 327.45641 * 22 12 10 40 40 H 1.09007 * 109.46964 * 296.52960 * 23 22 12 41 41 H 1.09002 * 109.47257 * 56.52190 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0899 1.1780 0.0000 4 8 1.4159 2.1854 -0.0411 5 6 3.5838 1.3240 0.0481 6 6 4.2493 0.0013 -0.3396 7 6 3.5948 -1.1257 0.4686 8 6 2.1481 -1.2876 0.0006 9 1 2.1398 -1.6968 -1.0097 10 6 1.4277 -2.2331 0.9268 11 8 0.8335 -1.8016 1.8919 12 7 1.4438 -3.5586 0.6825 13 6 2.2531 -4.0912 -0.4164 14 6 3.6327 -4.4233 0.0911 15 1 3.8816 -4.2549 1.1284 16 6 4.5768 -4.9431 -0.7689 17 7 4.2736 -5.1486 -2.0319 18 14 6.2867 -5.3554 -0.1397 19 1 6.3725 -5.0342 1.3075 20 1 6.5529 -6.8024 -0.3418 21 1 7.2938 -4.5581 -0.8848 22 6 0.6519 -4.4666 1.5159 23 6 -0.7624 -4.5813 0.9437 24 6 -1.5329 -5.5570 1.7317 25 7 -2.1277 -6.3100 2.3399 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 3.8880 1.6001 1.0577 30 1 3.8943 2.1032 -0.6481 31 1 5.3143 0.0456 -0.1117 32 1 4.1087 -0.1819 -1.4049 33 1 4.1384 -2.0562 0.3051 34 1 3.6126 -0.8732 1.5288 35 1 1.7837 -4.9929 -0.8095 36 1 2.3269 -3.3454 -1.2079 37 1 4.9379 -5.5140 -2.6370 38 1 1.1202 -5.4508 1.5272 39 1 0.6020 -4.0763 2.5324 40 1 -1.2528 -3.6089 0.9894 41 1 -0.7090 -4.9128 -0.0933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906377995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:13 Heat of formation + Delta-G solvation = -45.936703 kcal Electronic energy + Delta-G solvation = -24533.666864 eV Core-core repulsion = 21027.667116 eV Total energy + Delta-G solvation = -3505.999747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71324 -39.08295 -36.83351 -35.93918 -35.42802 -33.77135 -33.04808 -31.52450 -29.49110 -27.42266 -26.85654 -25.36311 -23.55416 -23.03281 -21.99299 -19.13793 -18.31520 -17.57203 -16.94902 -16.65274 -16.38577 -16.23428 -15.44451 -15.02782 -14.76445 -14.57534 -14.29438 -14.03876 -13.56759 -13.46958 -13.24812 -12.94022 -12.62865 -12.39782 -12.32301 -12.25783 -12.01601 -11.82699 -11.74710 -11.47742 -11.21579 -11.14091 -10.95141 -10.80967 -10.75687 -10.60433 -10.29865 -9.95385 -9.77793 -9.29004 -8.77550 -8.32947 -8.08545 -6.38002 -4.45732 2.68884 2.84330 2.87410 2.95139 3.09767 3.19555 3.20997 3.26760 3.60587 4.16909 4.24522 4.72512 4.84611 4.95518 4.97579 5.03226 5.13718 5.23092 5.30055 5.46941 5.51833 5.55563 5.66658 5.83415 5.88150 5.91641 5.96905 6.07790 6.12500 6.16864 6.36198 6.44212 6.53868 6.57030 6.91335 7.20958 7.56113 7.63069 7.64730 7.81762 7.97349 8.34602 8.54716 8.68967 9.22697 10.68480 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.007766 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.567831 B = 3604.642979 C = 6163.221436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.585 5.585 3 C 0.520 3.480 4 O -0.566 6.566 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.132 4.132 8 C 0.131 3.869 9 H 0.106 0.894 10 C 0.511 3.489 11 O -0.555 6.555 12 N -0.591 5.591 13 C 0.231 3.769 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.070 3.930 17 N -0.885 5.885 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.125 3.875 23 C -0.045 4.045 24 C 0.220 3.780 25 N -0.448 5.448 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 5.797 -0.181 5.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.317 5.317 3 C 0.309 3.691 4 O -0.446 6.446 5 C -0.174 4.174 6 C -0.158 4.158 7 C -0.170 4.170 8 C 0.025 3.975 9 H 0.123 0.877 10 C 0.298 3.702 11 O -0.434 6.434 12 N -0.321 5.321 13 C 0.111 3.889 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.719 3.281 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.206 1.206 22 C 0.000 4.000 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.125 5.125 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.609 5.321 1.014 6.012 hybrid contribution 1.282 -0.293 -0.079 1.317 sum -1.327 5.028 0.935 5.284 Atomic orbital electron populations 1.21701 0.79619 1.02191 1.02759 1.47026 1.07524 1.05257 1.71902 1.20111 0.90989 0.82386 0.75582 1.90669 1.66743 1.35655 1.51518 1.21685 0.91148 1.00089 1.04510 1.21647 1.00291 0.92804 1.01019 1.22001 0.92452 1.02541 1.00018 1.21063 0.93376 0.82509 1.00562 0.87668 1.20546 0.80605 0.83292 0.85758 1.90643 1.45832 1.77398 1.29515 1.48208 1.45040 1.05046 1.33834 1.19642 0.89867 0.95593 0.83765 1.21466 0.96045 1.43982 0.96645 0.91649 1.24910 0.98951 0.94872 0.94694 1.69901 1.35162 1.43520 1.03673 0.86530 0.83871 0.78423 0.79283 1.19514 1.20820 1.20649 1.21132 0.87902 0.95734 0.95232 1.19767 0.94931 0.95353 0.98627 1.29064 0.93471 0.93735 0.93542 1.81191 1.10230 1.10995 1.10078 0.91508 0.90720 0.91934 0.88510 0.88484 0.90238 0.90717 0.85857 0.91243 0.94059 0.93882 0.92324 0.89062 0.89926 0.87445 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 8.84 59.84 0.53 1.71 16 2 N -0.59 -9.18 2.95 -176.52 -0.52 -9.70 16 3 C 0.52 8.37 7.47 -11.87 -0.09 8.28 16 4 O -0.57 -10.75 16.18 5.56 0.09 -10.66 16 5 C -0.13 -1.68 6.03 -28.10 -0.17 -1.85 16 6 C -0.12 -1.46 6.03 -26.52 -0.16 -1.62 16 7 C -0.13 -1.95 5.28 -26.59 -0.14 -2.09 16 8 C 0.13 2.04 2.42 -69.53 -0.17 1.87 16 9 H 0.11 1.63 5.98 -51.93 -0.31 1.32 16 10 C 0.51 8.55 5.88 -10.99 -0.06 8.49 16 11 O -0.55 -10.37 14.57 5.56 0.08 -10.29 16 12 N -0.59 -9.59 2.46 -175.06 -0.43 -10.02 16 13 C 0.23 4.31 5.03 -5.19 -0.03 4.28 16 14 C -0.54 -11.61 7.39 -34.44 -0.25 -11.87 16 15 H 0.07 1.44 7.81 -52.49 -0.41 1.03 16 16 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -21.23 13.29 55.43 0.74 -20.50 16 18 Si 0.89 18.16 29.54 -169.99 -5.02 13.14 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 C 0.13 1.78 5.38 -4.04 -0.02 1.75 16 23 C -0.05 -0.52 6.02 -29.52 -0.18 -0.70 16 24 C 0.22 2.94 15.43 -20.76 -0.32 2.62 16 25 N -0.45 -7.11 18.54 42.15 0.78 -6.33 16 26 H 0.07 1.06 7.18 -51.93 -0.37 0.69 16 27 H 0.07 1.09 7.13 -51.93 -0.37 0.72 16 28 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.12 2.04 6.00 -51.93 -0.31 1.73 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 0.83 5.73 -51.93 -0.30 0.53 16 37 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 38 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 39 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 40 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 41 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -27.97 341.90 -6.08 -34.05 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.79 Total: 2.79 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.16 Total: 12.37 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.57 Total: -46.55 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.17 Total: -20.95 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.97 -6.08 -34.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906377995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.886 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds