Wall clock time and date at job start Tue Mar 31 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.33353 * 117.94871 * 2 1 4 4 O 1.21280 * 118.24709 * 357.79393 * 3 2 1 5 5 C 1.50177 * 123.51192 * 177.79951 * 3 2 1 6 6 C 1.53062 * 109.89728 * 17.54106 * 5 3 2 7 7 C 1.53349 * 108.42670 * 311.11937 * 6 5 3 8 8 C 1.45759 * 117.94789 * 179.97438 * 2 1 3 9 9 H 1.09005 * 109.12859 * 78.86866 * 8 2 1 10 10 C 1.50692 * 109.29796 * 319.38915 * 8 2 1 11 11 O 1.21279 * 120.00500 * 330.15178 * 10 8 2 12 12 N 1.34784 * 119.99588 * 150.15547 * 10 8 2 13 13 C 1.46498 * 120.00253 * 5.14635 * 12 10 8 14 14 C 1.50703 * 109.46822 * 89.99934 * 13 12 10 15 15 H 1.07998 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99607 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00404 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99435 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47627 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47004 * 120.00512 * 18 16 14 21 21 H 1.48502 * 109.46895 * 240.00271 * 18 16 14 22 22 C 1.46497 * 119.99901 * 185.15156 * 12 10 8 23 23 C 1.52998 * 109.47586 * 87.45594 * 22 12 10 24 24 C 1.47193 * 109.47496 * 176.52708 * 23 22 12 25 25 N 7.62872 * 61.90528 * 159.65401 * 2 1 3 26 26 H 1.08995 * 109.47229 * 270.02374 * 1 2 3 27 27 H 1.08995 * 109.47147 * 30.02491 * 1 2 3 28 28 H 1.08998 * 109.47455 * 150.02252 * 1 2 3 29 29 H 1.08999 * 109.38149 * 257.41991 * 5 3 2 30 30 H 1.09005 * 109.41429 * 137.67938 * 5 3 2 31 31 H 1.09001 * 109.67640 * 191.38543 * 6 5 3 32 32 H 1.08999 * 109.67674 * 70.84807 * 6 5 3 33 33 H 1.08997 * 109.60509 * 187.28882 * 7 6 5 34 34 H 1.09004 * 109.59759 * 307.61326 * 7 6 5 35 35 H 1.08999 * 109.47523 * 210.00122 * 13 12 10 36 36 H 1.09002 * 109.47217 * 330.00263 * 13 12 10 37 37 H 0.97001 * 120.00518 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.47307 * 207.45915 * 22 12 10 39 39 H 1.09000 * 109.47031 * 327.45641 * 22 12 10 40 40 H 1.09007 * 109.46964 * 296.52960 * 23 22 12 41 41 H 1.09002 * 109.47257 * 56.52190 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0899 1.1780 0.0000 4 8 1.4159 2.1854 -0.0411 5 6 3.5838 1.3240 0.0481 6 6 4.2493 0.0013 -0.3396 7 6 3.5948 -1.1257 0.4686 8 6 2.1481 -1.2876 0.0006 9 1 2.1398 -1.6968 -1.0097 10 6 1.4277 -2.2331 0.9268 11 8 0.8335 -1.8016 1.8919 12 7 1.4438 -3.5586 0.6825 13 6 2.2531 -4.0912 -0.4164 14 6 3.6327 -4.4233 0.0911 15 1 3.8816 -4.2549 1.1284 16 6 4.5768 -4.9431 -0.7689 17 7 4.2736 -5.1486 -2.0319 18 14 6.2867 -5.3554 -0.1397 19 1 6.3725 -5.0342 1.3075 20 1 6.5529 -6.8024 -0.3418 21 1 7.2938 -4.5581 -0.8848 22 6 0.6519 -4.4666 1.5159 23 6 -0.7624 -4.5813 0.9437 24 6 -1.5329 -5.5570 1.7317 25 7 -2.1277 -6.3100 2.3399 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 3.8880 1.6001 1.0577 30 1 3.8943 2.1032 -0.6481 31 1 5.3143 0.0456 -0.1117 32 1 4.1087 -0.1819 -1.4049 33 1 4.1384 -2.0562 0.3051 34 1 3.6126 -0.8732 1.5288 35 1 1.7837 -4.9929 -0.8095 36 1 2.3269 -3.3454 -1.2079 37 1 4.9379 -5.5140 -2.6370 38 1 1.1202 -5.4508 1.5272 39 1 0.6020 -4.0763 2.5324 40 1 -1.2528 -3.6089 0.9894 41 1 -0.7090 -4.9128 -0.0933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906377995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:12 Heat of formation + Delta-G solvation = -61.425138 kcal Electronic energy + Delta-G solvation = -24534.338493 eV Core-core repulsion = 21027.667116 eV Total energy + Delta-G solvation = -3506.671376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98110 -40.40237 -38.01896 -37.19795 -36.81918 -34.90982 -34.64570 -32.79431 -30.68299 -28.99802 -28.03649 -26.52909 -25.01144 -24.36663 -23.13852 -20.42858 -19.55388 -18.76269 -18.36172 -18.09833 -17.68373 -17.48133 -16.69158 -16.45262 -16.01582 -15.89540 -15.58912 -15.17673 -14.79383 -14.72228 -14.35572 -14.25630 -14.13454 -13.63605 -13.59057 -13.44946 -13.27498 -13.16477 -12.95154 -12.78006 -12.69347 -12.55174 -12.34804 -12.10667 -11.83052 -11.75030 -11.74357 -11.56870 -11.11191 -10.58445 -10.47777 -9.63418 -9.50735 -8.11104 -6.21046 1.46305 1.47518 1.55292 1.59216 1.62189 1.74608 1.78935 1.98088 2.36361 2.50709 3.14471 3.22345 3.57038 3.60869 3.84765 3.95987 4.06972 4.14453 4.19713 4.31101 4.41304 4.55626 4.61451 4.66783 4.81907 4.85826 4.92431 4.93037 5.01058 5.05185 5.09509 5.27471 5.32488 5.36405 5.41258 5.72633 5.87514 6.15924 6.40983 6.54786 6.56252 6.90158 7.10250 7.28212 7.50011 8.94283 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.007766 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.567831 B = 3604.642979 C = 6163.221436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.587 5.587 3 C 0.512 3.488 4 O -0.600 6.600 5 C -0.128 4.128 6 C -0.112 4.112 7 C -0.130 4.130 8 C 0.134 3.866 9 H 0.108 0.892 10 C 0.513 3.487 11 O -0.574 6.574 12 N -0.587 5.587 13 C 0.243 3.757 14 C -0.536 4.536 15 H 0.057 0.943 16 C 0.035 3.965 17 N -0.912 5.912 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.123 3.877 23 C -0.031 4.031 24 C 0.244 3.756 25 N -0.491 5.491 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 6.271 -0.477 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.318 5.318 3 C 0.302 3.698 4 O -0.483 6.483 5 C -0.167 4.167 6 C -0.149 4.149 7 C -0.168 4.168 8 C 0.027 3.973 9 H 0.126 0.874 10 C 0.300 3.700 11 O -0.455 6.455 12 N -0.317 5.317 13 C 0.122 3.878 14 C -0.574 4.574 15 H 0.075 0.925 16 C -0.166 4.166 17 N -0.552 5.552 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.002 4.002 23 C -0.072 4.072 24 C -0.073 4.073 25 N -0.169 5.169 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.927 5.777 0.731 6.134 hybrid contribution 1.052 -0.441 0.057 1.142 sum -0.874 5.336 0.788 5.465 Atomic orbital electron populations 1.21698 0.79399 1.02979 1.02090 1.47130 1.07924 1.05355 1.71440 1.20821 0.92477 0.81826 0.74651 1.90652 1.67819 1.36634 1.53167 1.21719 0.88353 1.00757 1.05881 1.21625 1.01274 0.91452 1.00592 1.21941 0.91846 1.02774 1.00227 1.21066 0.93736 0.82163 1.00303 0.87413 1.20733 0.80240 0.83421 0.85593 1.90643 1.46748 1.77636 1.30424 1.48106 1.44915 1.05216 1.33461 1.19370 0.88900 0.95323 0.84163 1.21631 0.97119 1.42644 0.96023 0.92490 1.25372 1.01158 0.95282 0.94836 1.69963 1.35843 1.44952 1.04397 0.85831 0.81505 0.77541 0.78733 1.19540 1.21723 1.20391 1.21193 0.89141 0.95095 0.94794 1.19726 0.92901 0.95587 0.99019 1.29249 0.92550 0.92948 0.92538 1.81221 1.11700 1.12511 1.11475 0.92860 0.90891 0.90187 0.87192 0.86586 0.87978 0.90525 0.87542 0.91721 0.94571 0.93879 0.92517 0.89257 0.90603 0.86093 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 8.84 127.77 1.13 3.44 16 2 N -0.59 -17.73 2.95 -831.56 -2.45 -20.18 16 3 C 0.51 15.76 7.47 87.71 0.66 16.42 16 4 O -0.60 -22.35 16.18 -3.03 -0.05 -22.40 16 5 C -0.13 -2.87 6.03 29.70 0.18 -2.69 16 6 C -0.11 -2.44 6.03 30.73 0.19 -2.26 16 7 C -0.13 -3.62 5.28 30.68 0.16 -3.45 16 8 C 0.13 3.96 2.42 44.36 0.11 4.07 16 9 H 0.11 3.16 5.98 -2.38 -0.01 3.15 16 10 C 0.51 16.50 5.88 87.65 0.52 17.01 16 11 O -0.57 -20.85 14.57 -3.03 -0.04 -20.89 16 12 N -0.59 -18.23 2.46 -826.16 -2.03 -20.27 16 13 C 0.24 8.75 5.03 85.63 0.43 9.18 16 14 C -0.54 -22.31 7.39 25.60 0.19 -22.12 16 15 H 0.06 2.45 7.81 -2.91 -0.02 2.43 16 16 C 0.03 1.54 5.46 84.66 0.46 2.01 16 17 N -0.91 -43.01 13.29 21.45 0.28 -42.73 16 18 Si 0.94 36.50 29.54 68.60 2.03 38.52 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 22 C 0.12 3.30 5.38 86.38 0.46 3.76 16 23 C -0.03 -0.65 6.02 28.79 0.17 -0.48 16 24 C 0.24 6.19 15.43 89.44 1.38 7.57 16 25 N -0.49 -15.23 18.54 20.00 0.37 -14.86 16 26 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 27 H 0.07 2.10 7.13 -2.39 -0.02 2.08 16 28 H 0.08 1.95 7.75 -2.39 -0.02 1.93 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 33 H 0.11 3.37 6.00 -2.39 -0.01 3.36 16 34 H 0.06 1.85 8.10 -2.38 -0.02 1.83 16 35 H 0.04 1.37 8.07 -2.39 -0.02 1.35 16 36 H 0.04 1.59 5.73 -2.39 -0.01 1.58 16 37 H 0.27 12.16 8.31 -92.71 -0.77 11.39 16 38 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 39 H 0.08 2.17 7.43 -2.39 -0.02 2.15 16 40 H 0.12 2.30 8.14 -2.38 -0.02 2.29 16 41 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -58.46 341.90 5.18 -53.28 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.04 Total: 17.07 kcal Atomic # 6 Polarization: 26.42 SS G_CDS: 6.03 Total: 32.46 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -3.83 Total: -98.04 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.09 Total: -43.29 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.52 kcal Total: -58.46 5.18 -53.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906377995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.147 kcal (2) G-P(sol) polarization free energy of solvation -58.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds