Wall clock time and date at job start Tue Mar 31 2020 03:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37089 * 120.00472 * 2 1 4 4 H 1.07996 * 120.00199 * 201.89291 * 3 2 1 5 5 C 1.38952 * 119.99844 * 21.89761 * 3 2 1 6 6 N 1.31422 * 120.00086 * 14.89923 * 5 3 2 7 7 Si 1.86800 * 120.00060 * 194.90139 * 5 3 2 8 8 H 1.48500 * 109.47045 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47158 * 120.00326 * 7 5 3 10 10 H 1.48502 * 109.46866 * 239.99912 * 7 5 3 11 11 C 1.34787 * 119.99622 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99751 * 179.97438 * 11 2 1 13 13 C 1.50698 * 119.99937 * 0.02562 * 11 2 1 14 14 H 1.09004 * 110.43310 * 57.45957 * 13 11 2 15 15 C 1.55232 * 110.58354 * 294.87224 * 13 11 2 16 16 C 1.54894 * 102.59064 * 203.33843 * 15 13 11 17 17 C 1.54268 * 104.30912 * 37.93218 * 16 15 13 18 18 C 1.53880 * 106.60037 * 336.32182 * 17 16 15 19 19 H 1.09000 * 110.02815 * 119.28491 * 18 17 16 20 20 C 1.50694 * 110.03188 * 240.71920 * 18 17 16 21 21 O 1.21276 * 120.00005 * 118.54969 * 20 18 17 22 22 N 1.34783 * 119.99637 * 298.54143 * 20 18 17 23 23 C 1.46495 * 119.99985 * 0.02562 * 22 20 18 24 24 C 1.46500 * 119.99375 * 180.02562 * 22 20 18 25 25 C 1.47196 * 109.47322 * 90.00334 * 24 22 20 26 26 N 7.36960 * 123.32094 * 222.15439 * 2 1 3 27 27 H 1.09007 * 109.47213 * 270.15605 * 1 2 3 28 28 H 1.09002 * 109.47213 * 30.15066 * 1 2 3 29 29 H 1.08993 * 109.47601 * 150.15523 * 1 2 3 30 30 H 0.96991 * 120.00108 * 179.97438 * 6 5 3 31 31 H 1.09006 * 110.89692 * 85.04893 * 15 13 11 32 32 H 1.09004 * 110.76729 * 321.57481 * 15 13 11 33 33 H 1.08994 * 110.48295 * 279.18899 * 16 15 13 34 34 H 1.08996 * 110.48460 * 156.67216 * 16 15 13 35 35 H 1.08994 * 110.03281 * 95.60417 * 17 16 15 36 36 H 1.09002 * 110.02978 * 216.98936 * 17 16 15 37 37 H 1.09001 * 109.46667 * 90.00378 * 23 22 20 38 38 H 1.09001 * 109.46653 * 209.99331 * 23 22 20 39 39 H 1.08990 * 109.47498 * 329.99913 * 23 22 20 40 40 H 1.09006 * 109.46729 * 210.00281 * 24 22 20 41 41 H 1.09000 * 109.47514 * 329.99842 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1721 1.2208 -0.3487 5 6 1.5310 2.3471 0.4488 6 7 0.4143 2.2714 1.1377 7 14 2.2853 4.0142 0.0730 8 1 3.5327 3.8278 -0.7109 9 1 1.3228 4.8271 -0.7132 10 1 2.6003 4.7131 1.3449 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1674 -0.0010 13 6 1.3852 -2.4724 -0.0017 14 1 0.7195 -2.5266 -0.8631 15 6 0.5825 -2.6402 1.3163 16 6 0.4064 -4.1762 1.4111 17 6 1.7444 -4.7458 0.8961 18 6 2.3667 -3.6625 -0.0023 19 1 3.3306 -3.3518 0.4007 20 6 2.5380 -4.1898 -1.4035 21 8 1.9588 -3.6577 -2.3266 22 7 3.3351 -5.2526 -1.6308 23 6 4.0344 -5.8956 -0.5156 24 6 3.5020 -5.7648 -2.9932 25 6 4.6385 -5.0860 -3.6368 26 7 5.5133 -4.5652 -4.1329 27 1 -0.3634 0.0028 1.0277 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5114 30 1 -0.0179 3.0811 1.4512 31 1 -0.3856 -2.1439 1.2478 32 1 1.1517 -2.2634 2.1662 33 1 -0.4174 -4.5055 0.7780 34 1 0.2362 -4.4775 2.4447 35 1 2.4063 -4.9607 1.7350 36 1 1.5664 -5.6534 0.3193 37 1 3.4076 -6.6848 -0.1004 38 1 4.9703 -6.3251 -0.8730 39 1 4.2455 -5.1554 0.2560 40 1 3.6924 -6.8375 -2.9572 41 1 2.5942 -5.5760 -3.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906469168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:52 Heat of formation + Delta-G solvation = -31.746122 kcal Electronic energy + Delta-G solvation = -24381.876341 eV Core-core repulsion = 20876.491943 eV Total energy + Delta-G solvation = -3505.384398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56067 -38.64285 -36.91328 -36.29145 -35.40631 -34.58140 -31.63247 -30.28194 -28.92605 -28.08140 -26.40834 -26.06905 -24.44693 -21.90284 -20.72113 -19.79145 -18.25593 -18.00950 -17.26447 -16.79662 -16.52905 -15.91568 -15.24309 -14.83553 -14.55165 -14.17811 -14.05253 -13.97654 -13.47154 -13.41019 -13.08047 -12.93766 -12.70956 -12.54805 -12.38190 -11.88945 -11.85249 -11.68125 -11.43670 -11.25777 -11.08382 -10.99494 -10.79262 -10.57312 -10.50372 -10.40608 -10.26095 -10.09271 -9.61857 -9.07377 -8.96146 -8.27498 -7.60549 -6.26810 -3.79867 2.23293 2.69102 2.73281 3.18946 3.27779 3.29277 3.37247 3.91518 3.96853 4.18694 4.48197 4.68373 4.72545 4.87749 4.89939 5.08335 5.15594 5.19760 5.28462 5.32439 5.50140 5.60213 5.73713 5.76432 5.87836 5.89348 5.92849 6.11168 6.15440 6.22553 6.36384 6.45369 6.50822 6.71827 6.94398 7.15420 7.26092 7.45511 7.63066 8.16111 8.21394 8.55865 9.25850 9.51303 10.07038 10.77804 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004768 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.250484 B = 5871.507702 C = 6917.424375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.443 5.443 3 C -0.304 4.304 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.922 3.078 8 H -0.269 1.269 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.457 3.543 12 O -0.595 6.595 13 C -0.090 4.090 14 H 0.102 0.898 15 C -0.112 4.112 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.097 4.097 19 H 0.120 0.880 20 C 0.531 3.469 21 O -0.523 6.523 22 N -0.621 5.621 23 C 0.075 3.925 24 C 0.212 3.788 25 C 0.187 3.813 26 N -0.419 5.419 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -19.437 0.436 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.161 5.161 3 C -0.432 4.432 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.749 3.251 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.245 3.755 12 O -0.481 6.481 13 C -0.112 4.112 14 H 0.120 0.880 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.151 4.151 18 C -0.119 4.119 19 H 0.138 0.862 20 C 0.321 3.679 21 O -0.397 6.397 22 N -0.357 5.357 23 C -0.067 4.067 24 C 0.085 3.915 25 C -0.133 4.133 26 N -0.096 5.096 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.503 -18.192 -0.711 18.213 hybrid contribution -0.037 0.798 0.073 0.802 sum -0.540 -17.394 -0.638 17.414 Atomic orbital electron populations 1.21542 0.81273 0.99124 1.01186 1.43482 1.05443 1.04671 1.62465 1.19688 0.99243 0.83774 1.40471 0.88504 1.25286 0.96642 0.99902 0.95420 1.70019 1.18978 1.29016 1.34106 0.85924 0.79207 0.81713 0.78238 1.19306 1.20670 1.20805 1.19809 0.87776 0.84741 0.83200 1.90474 1.14129 1.86988 1.56494 1.21950 0.96763 0.92612 0.99861 0.88031 1.22595 1.00464 0.95184 0.96793 1.22361 0.96764 0.96011 1.00860 1.22220 0.97416 0.96959 0.98523 1.21837 1.03051 0.95642 0.91331 0.86198 1.20927 0.77033 0.77939 0.92003 1.90696 1.46915 1.56496 1.45623 1.47819 1.48425 1.33016 1.06444 1.21995 0.96719 0.98584 0.89446 1.18808 0.92616 0.96938 0.83100 1.29747 0.94820 0.94383 0.94367 1.81039 1.11984 1.08054 1.08554 0.92474 0.91494 0.95304 0.92426 0.90336 0.90890 0.91542 0.91388 0.90803 0.91478 0.91615 0.91123 0.90010 0.85952 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 7.25 59.85 0.43 3.02 16 2 N -0.44 -11.73 3.02 -122.20 -0.37 -12.10 16 3 C -0.30 -8.78 9.28 -14.94 -0.14 -8.92 16 4 H 0.10 2.97 7.41 -52.49 -0.39 2.58 16 5 C 0.03 0.82 5.03 -17.46 -0.09 0.73 16 6 N -0.88 -23.84 10.79 55.50 0.60 -23.24 16 7 Si 0.92 21.43 29.58 -169.99 -5.03 16.40 16 8 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.46 11.43 7.01 -10.98 -0.08 11.35 16 12 O -0.60 -16.83 15.11 5.54 0.08 -16.75 16 13 C -0.09 -1.69 1.62 -89.93 -0.15 -1.83 16 14 H 0.10 1.97 6.05 -51.93 -0.31 1.66 16 15 C -0.11 -1.74 5.59 -24.55 -0.14 -1.88 16 16 C -0.12 -1.38 6.82 -25.07 -0.17 -1.55 16 17 C -0.11 -1.20 4.91 -25.61 -0.13 -1.33 16 18 C -0.10 -1.50 1.81 -90.65 -0.16 -1.67 16 19 H 0.12 2.09 6.13 -51.93 -0.32 1.77 16 20 C 0.53 8.21 6.85 -10.99 -0.08 8.13 16 21 O -0.52 -10.05 14.99 5.56 0.08 -9.97 16 22 N -0.62 -6.72 2.80 -184.94 -0.52 -7.24 16 23 C 0.08 0.54 9.04 59.84 0.54 1.08 16 24 C 0.21 1.82 5.88 -6.83 -0.04 1.78 16 25 C 0.19 2.42 15.75 -20.88 -0.33 2.09 16 26 N -0.42 -6.86 18.51 42.02 0.78 -6.08 16 27 H 0.06 1.31 7.19 -51.92 -0.37 0.94 16 28 H 0.07 1.63 6.98 -51.93 -0.36 1.27 16 29 H 0.03 0.56 6.00 -51.93 -0.31 0.25 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.08 1.20 6.47 -51.93 -0.34 0.86 16 32 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 36 H 0.07 0.58 6.68 -51.93 -0.35 0.23 16 37 H 0.07 0.30 7.48 -51.93 -0.39 -0.09 16 38 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 39 H 0.08 0.68 6.19 -51.93 -0.32 0.36 16 40 H 0.12 0.44 8.07 -51.93 -0.42 0.02 16 41 H 0.13 1.07 7.42 -51.93 -0.39 0.69 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -37.00 333.88 -5.36 -42.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.51 Total: 0.58 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -0.52 Total: 11.01 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.49 Total: -48.66 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: 0.17 Total: -26.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.00 -5.36 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906469168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.611 kcal (2) G-P(sol) polarization free energy of solvation -36.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds