Wall clock time and date at job start Tue Mar 31 2020 03:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37089 * 120.00472 * 2 1 4 4 H 1.07996 * 120.00199 * 201.89291 * 3 2 1 5 5 C 1.38952 * 119.99844 * 21.89761 * 3 2 1 6 6 N 1.31422 * 120.00086 * 14.89923 * 5 3 2 7 7 Si 1.86800 * 120.00060 * 194.90139 * 5 3 2 8 8 H 1.48500 * 109.47045 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47158 * 120.00326 * 7 5 3 10 10 H 1.48502 * 109.46866 * 239.99912 * 7 5 3 11 11 C 1.34787 * 119.99622 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99751 * 179.97438 * 11 2 1 13 13 C 1.50698 * 119.99937 * 0.02562 * 11 2 1 14 14 H 1.09004 * 110.43310 * 57.45957 * 13 11 2 15 15 C 1.55232 * 110.58354 * 294.87224 * 13 11 2 16 16 C 1.54894 * 102.59064 * 203.33843 * 15 13 11 17 17 C 1.54268 * 104.30912 * 37.93218 * 16 15 13 18 18 C 1.53880 * 106.60037 * 336.32182 * 17 16 15 19 19 H 1.09000 * 110.02815 * 119.28491 * 18 17 16 20 20 C 1.50694 * 110.03188 * 240.71920 * 18 17 16 21 21 O 1.21276 * 120.00005 * 118.54969 * 20 18 17 22 22 N 1.34783 * 119.99637 * 298.54143 * 20 18 17 23 23 C 1.46495 * 119.99985 * 0.02562 * 22 20 18 24 24 C 1.46500 * 119.99375 * 180.02562 * 22 20 18 25 25 C 1.47196 * 109.47322 * 90.00334 * 24 22 20 26 26 N 7.36960 * 123.32094 * 222.15439 * 2 1 3 27 27 H 1.09007 * 109.47213 * 270.15605 * 1 2 3 28 28 H 1.09002 * 109.47213 * 30.15066 * 1 2 3 29 29 H 1.08993 * 109.47601 * 150.15523 * 1 2 3 30 30 H 0.96991 * 120.00108 * 179.97438 * 6 5 3 31 31 H 1.09006 * 110.89692 * 85.04893 * 15 13 11 32 32 H 1.09004 * 110.76729 * 321.57481 * 15 13 11 33 33 H 1.08994 * 110.48295 * 279.18899 * 16 15 13 34 34 H 1.08996 * 110.48460 * 156.67216 * 16 15 13 35 35 H 1.08994 * 110.03281 * 95.60417 * 17 16 15 36 36 H 1.09002 * 110.02978 * 216.98936 * 17 16 15 37 37 H 1.09001 * 109.46667 * 90.00378 * 23 22 20 38 38 H 1.09001 * 109.46653 * 209.99331 * 23 22 20 39 39 H 1.08990 * 109.47498 * 329.99913 * 23 22 20 40 40 H 1.09006 * 109.46729 * 210.00281 * 24 22 20 41 41 H 1.09000 * 109.47514 * 329.99842 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1721 1.2208 -0.3487 5 6 1.5310 2.3471 0.4488 6 7 0.4143 2.2714 1.1377 7 14 2.2853 4.0142 0.0730 8 1 3.5327 3.8278 -0.7109 9 1 1.3228 4.8271 -0.7132 10 1 2.6003 4.7131 1.3449 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1674 -0.0010 13 6 1.3852 -2.4724 -0.0017 14 1 0.7195 -2.5266 -0.8631 15 6 0.5825 -2.6402 1.3163 16 6 0.4064 -4.1762 1.4111 17 6 1.7444 -4.7458 0.8961 18 6 2.3667 -3.6625 -0.0023 19 1 3.3306 -3.3518 0.4007 20 6 2.5380 -4.1898 -1.4035 21 8 1.9588 -3.6577 -2.3266 22 7 3.3351 -5.2526 -1.6308 23 6 4.0344 -5.8956 -0.5156 24 6 3.5020 -5.7648 -2.9932 25 6 4.6385 -5.0860 -3.6368 26 7 5.5133 -4.5652 -4.1329 27 1 -0.3634 0.0028 1.0277 28 1 -0.3634 0.8886 -0.5162 29 1 -0.3634 -0.8913 -0.5114 30 1 -0.0179 3.0811 1.4512 31 1 -0.3856 -2.1439 1.2478 32 1 1.1517 -2.2634 2.1662 33 1 -0.4174 -4.5055 0.7780 34 1 0.2362 -4.4775 2.4447 35 1 2.4063 -4.9607 1.7350 36 1 1.5664 -5.6534 0.3193 37 1 3.4076 -6.6848 -0.1004 38 1 4.9703 -6.3251 -0.8730 39 1 4.2455 -5.1554 0.2560 40 1 3.6924 -6.8375 -2.9572 41 1 2.5942 -5.5760 -3.5662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906469168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:51 Heat of formation + Delta-G solvation = -58.051155 kcal Electronic energy + Delta-G solvation = -24383.017013 eV Core-core repulsion = 20876.491943 eV Total energy + Delta-G solvation = -3506.525070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77708 -40.27807 -38.12298 -37.56350 -36.65194 -36.42690 -33.69386 -31.28575 -30.27686 -29.01404 -27.98640 -27.24328 -26.38493 -23.24438 -21.79684 -21.14398 -19.68669 -19.04965 -18.90165 -18.49993 -17.54469 -17.34110 -16.85123 -16.20610 -16.00131 -15.68396 -15.56584 -15.14834 -14.96760 -14.55413 -14.18384 -14.05055 -13.88411 -13.74067 -13.64468 -13.40825 -13.20277 -13.10185 -12.87116 -12.70059 -12.55201 -12.47451 -12.37728 -12.20255 -12.01167 -11.77971 -11.66236 -11.46241 -11.02607 -10.75445 -10.26834 -9.95355 -9.69675 -8.36969 -5.99447 1.25397 1.31586 1.36174 1.50171 1.58673 1.73258 2.03316 2.24934 2.34083 3.04278 3.06755 3.09197 3.42178 3.63707 3.80814 4.09361 4.27710 4.33812 4.38897 4.48127 4.50523 4.54428 4.60446 4.68390 4.75379 4.85598 4.87277 5.00477 5.03739 5.10099 5.22859 5.27160 5.34112 5.36567 5.41693 5.44154 5.51955 6.07274 6.19640 6.46924 6.47061 7.07081 7.15229 7.47201 8.03774 8.66153 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.004768 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.250484 B = 5871.507702 C = 6917.424375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.462 5.462 3 C -0.348 4.348 4 H 0.062 0.938 5 C 0.002 3.998 6 N -0.891 5.891 7 Si 0.985 3.015 8 H -0.281 1.281 9 H -0.263 1.263 10 H -0.270 1.270 11 C 0.443 3.557 12 O -0.640 6.640 13 C -0.087 4.087 14 H 0.096 0.904 15 C -0.111 4.111 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.097 4.097 19 H 0.094 0.906 20 C 0.525 3.475 21 O -0.573 6.573 22 N -0.612 5.612 23 C 0.064 3.936 24 C 0.209 3.791 25 C 0.211 3.789 26 N -0.491 5.491 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.274 0.726 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.189 0.811 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -22.279 1.483 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.179 5.179 3 C -0.476 4.476 4 H 0.080 0.920 5 C -0.200 4.200 6 N -0.529 5.529 7 Si 0.809 3.191 8 H -0.206 1.206 9 H -0.188 1.188 10 H -0.195 1.195 11 C 0.233 3.767 12 O -0.529 6.529 13 C -0.108 4.108 14 H 0.114 0.886 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.119 4.119 19 H 0.112 0.888 20 C 0.314 3.686 21 O -0.452 6.452 22 N -0.345 5.345 23 C -0.077 4.077 24 C 0.083 3.917 25 C -0.108 4.108 26 N -0.170 5.170 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.206 0.794 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.857 -21.080 0.369 21.165 hybrid contribution 0.411 1.678 -0.228 1.742 sum -1.446 -19.402 0.141 19.456 Atomic orbital electron populations 1.21455 0.79442 0.99649 1.01109 1.43769 1.06717 1.04652 1.62790 1.19559 0.98798 0.86051 1.43219 0.91972 1.26000 0.97039 1.02540 0.94469 1.70062 1.19198 1.30362 1.33287 0.85015 0.78189 0.77512 0.78405 1.20569 1.18815 1.19499 1.21012 0.87779 0.86528 0.81336 1.90422 1.16380 1.88050 1.58032 1.21939 0.97264 0.90245 1.01385 0.88613 1.22591 0.99303 0.99133 0.93902 1.22361 0.97607 0.91842 1.03027 1.22269 0.97028 0.96073 0.98566 1.21814 1.01227 0.96009 0.92851 0.88797 1.20982 0.77509 0.78748 0.91320 1.90671 1.49420 1.58408 1.46672 1.47845 1.46780 1.31532 1.08346 1.22355 0.98288 0.98924 0.88097 1.19484 0.91032 0.99618 0.81529 1.30669 0.94438 0.92818 0.92903 1.81057 1.14666 1.10393 1.10843 0.92686 0.93376 0.92194 0.91572 0.90344 0.92937 0.89992 0.88674 0.88473 0.88261 0.87456 0.89106 0.91525 0.79444 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.95 7.25 127.77 0.93 6.88 16 2 N -0.46 -25.65 3.02 -658.89 -1.99 -27.64 16 3 C -0.35 -21.23 9.28 84.04 0.78 -20.45 16 4 H 0.06 4.12 7.41 -2.91 -0.02 4.10 16 5 C 0.00 0.09 5.03 84.93 0.43 0.52 16 6 N -0.89 -48.55 10.79 21.67 0.23 -48.32 16 7 Si 0.99 44.73 29.58 68.60 2.03 46.76 16 8 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 C 0.44 23.37 7.01 87.65 0.61 23.98 16 12 O -0.64 -38.67 15.11 -3.08 -0.05 -38.71 16 13 C -0.09 -3.30 1.62 -10.34 -0.02 -3.31 16 14 H 0.10 3.77 6.05 -2.38 -0.01 3.75 16 15 C -0.11 -3.36 5.59 32.01 0.18 -3.18 16 16 C -0.11 -2.08 6.82 31.67 0.22 -1.87 16 17 C -0.10 -1.78 4.91 31.32 0.15 -1.62 16 18 C -0.10 -2.95 1.81 -10.82 -0.02 -2.97 16 19 H 0.09 3.36 6.13 -2.39 -0.01 3.35 16 20 C 0.52 15.72 6.85 87.65 0.60 16.32 16 21 O -0.57 -22.22 14.99 -3.02 -0.05 -22.26 16 22 N -0.61 -11.54 2.80 -857.42 -2.40 -13.94 16 23 C 0.06 0.67 9.04 127.77 1.15 1.83 16 24 C 0.21 2.92 5.88 84.57 0.50 3.42 16 25 C 0.21 5.27 15.75 89.48 1.41 6.68 16 26 N -0.49 -16.41 18.51 19.96 0.37 -16.04 16 27 H 0.05 2.57 7.19 -2.38 -0.02 2.55 16 28 H 0.05 2.40 6.98 -2.39 -0.02 2.38 16 29 H 0.06 2.39 6.00 -2.39 -0.01 2.37 16 30 H 0.27 13.87 8.31 -92.72 -0.77 13.10 16 31 H 0.08 2.32 6.47 -2.38 -0.02 2.30 16 32 H 0.05 1.78 8.06 -2.38 -0.02 1.76 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 36 H 0.10 1.15 6.68 -2.39 -0.02 1.13 16 37 H 0.11 0.32 7.48 -2.39 -0.02 0.30 16 38 H 0.09 0.64 8.07 -2.39 -0.02 0.62 16 39 H 0.07 0.95 6.19 -2.39 -0.01 0.94 16 40 H 0.19 0.24 8.07 -2.38 -0.02 0.22 16 41 H 0.13 1.88 7.42 -2.39 -0.02 1.87 16 Total: -1.00 -89.35 333.88 6.13 -83.22 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.05 Total: 10.71 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.92 Total: 26.23 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.79 Total: -105.94 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -0.09 Total: -60.98 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -89.35 6.13 -83.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906469168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.169 kcal (2) G-P(sol) polarization free energy of solvation -89.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds