Wall clock time and date at job start Tue Mar 31 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99848 * 2 1 4 4 C 1.53004 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46935 * 64.99660 * 4 3 2 6 6 C 1.36842 * 119.99988 * 264.16960 * 5 4 3 7 7 H 1.08000 * 119.99684 * 135.52466 * 6 5 4 8 8 C 1.39051 * 120.00067 * 315.52890 * 6 5 4 9 9 N 1.31366 * 120.00230 * 2.57493 * 8 6 5 10 10 Si 1.86806 * 119.99906 * 182.56780 * 8 6 5 11 11 H 1.48498 * 109.47080 * 59.99867 * 10 8 6 12 12 H 1.48502 * 109.47180 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47241 * 300.00186 * 10 8 6 14 14 C 1.34770 * 119.99958 * 84.17527 * 5 4 3 15 15 O 1.21668 * 120.00253 * 4.42985 * 14 5 4 16 16 C 1.47026 * 120.00018 * 184.42975 * 14 5 4 17 17 C 1.38205 * 126.95536 * 260.95570 * 16 14 5 18 18 C 1.39501 * 105.70089 * 180.02562 * 17 16 14 19 19 N 1.31086 * 107.61449 * 359.97438 * 18 17 16 20 20 N 1.28448 * 110.99280 * 0.02562 * 19 18 17 21 21 C 1.46500 * 125.20124 * 180.02562 * 20 19 18 22 22 C 1.51274 * 109.37339 * 179.97438 * 18 17 16 23 23 C 1.54375 * 105.27511 * 17.13413 * 22 18 17 24 24 C 1.50852 * 144.40611 * 0.05041 * 17 16 14 25 25 H 1.08994 * 109.46959 * 300.00828 * 1 2 3 26 26 H 1.09008 * 109.46561 * 60.00609 * 1 2 3 27 27 H 1.08998 * 109.47030 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47605 * 59.99873 * 3 2 1 29 29 H 1.08996 * 109.47276 * 299.99154 * 3 2 1 30 30 H 1.09004 * 109.46705 * 305.00349 * 4 3 2 31 31 H 1.09001 * 109.47554 * 184.99837 * 4 3 2 32 32 H 0.96993 * 119.99797 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46924 * 95.09425 * 21 20 19 34 34 H 1.09001 * 109.46765 * 215.09690 * 21 20 19 35 35 H 1.08996 * 109.46787 * 335.09854 * 21 20 19 36 36 H 1.09003 * 110.27933 * 136.08148 * 22 18 17 37 37 H 1.08994 * 110.28322 * 258.18019 * 22 18 17 38 38 H 1.09006 * 110.78373 * 91.96646 * 23 22 18 39 39 H 1.09000 * 110.77840 * 215.40498 * 23 22 18 40 40 H 1.08998 * 110.30935 * 44.00796 * 24 17 16 41 41 H 1.08998 * 110.38435 * 281.89306 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2127 -0.7831 -1.3005 7 1 3.8468 -1.3650 -2.1335 8 6 4.9235 -1.4025 -0.2784 9 7 5.3247 -0.7042 0.7594 10 14 5.3077 -3.2277 -0.3811 11 1 6.1192 -3.4952 -1.5957 12 1 6.0692 -3.6419 0.8247 13 1 4.0397 -3.9973 -0.4538 14 6 4.1503 1.3195 -2.3533 15 8 4.0190 2.5274 -2.2898 16 6 4.4983 0.6842 -3.6327 17 6 5.7566 0.5835 -4.1952 18 6 5.5781 -0.0961 -5.4004 19 7 4.3009 -0.3665 -5.5179 20 7 3.6424 0.0736 -4.5066 21 6 2.1957 -0.0594 -4.3181 22 6 6.9149 -0.2525 -6.0910 23 6 7.9714 0.0064 -4.9956 24 6 7.2150 0.9202 -4.0070 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 5.8209 -1.1363 1.4721 33 1 1.9880 -0.9396 -3.7096 34 1 1.8117 0.8285 -3.8158 35 1 1.7112 -0.1661 -5.2886 36 1 7.0201 -1.2630 -6.4861 37 1 7.0141 0.4796 -6.8924 38 1 8.2650 -0.9260 -4.5133 39 1 8.8397 0.5192 -5.4094 40 1 7.5234 0.7071 -2.9835 41 1 7.3966 1.9681 -4.2456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909561237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:05 Heat of formation + Delta-G solvation = 15.533311 kcal Electronic energy + Delta-G solvation = -25022.139837 eV Core-core repulsion = 21518.805629 eV Total energy + Delta-G solvation = -3503.334208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.91169 -38.53698 -36.96106 -36.40065 -34.77419 -31.68714 -31.57522 -30.37193 -28.96253 -26.94870 -25.96715 -25.82543 -24.74513 -22.91331 -21.36911 -20.25440 -19.57873 -18.79338 -17.24278 -16.37147 -15.79849 -15.59872 -15.40273 -14.99115 -14.60009 -14.57382 -14.35037 -14.13208 -13.62849 -13.26002 -12.92895 -12.48929 -12.25508 -12.22186 -11.98159 -11.92245 -11.68074 -11.35682 -11.25932 -11.06783 -11.00202 -10.76123 -10.75086 -10.60380 -10.39834 -10.11193 -9.68724 -9.18066 -9.04007 -8.78363 -8.17769 -7.82375 -7.55306 -6.31597 -4.15648 2.53742 2.93815 3.18737 3.21495 3.24259 3.28244 3.74791 4.12867 4.43438 4.48300 4.68886 5.01626 5.23385 5.26566 5.38114 5.52001 5.60187 5.60662 5.64139 5.77010 5.77700 5.86369 5.91962 5.99143 6.02190 6.13390 6.15456 6.26806 6.31470 6.47132 6.56342 6.61051 6.65910 6.81823 7.23526 7.29460 7.51090 7.56448 7.74884 7.95833 8.34737 8.79359 9.03561 9.34995 9.77571 10.66776 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.007381 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.591348 B = 3792.387281 C = 4602.570078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.104 3.896 5 N -0.410 5.410 6 C -0.314 4.314 7 H 0.080 0.920 8 C 0.053 3.947 9 N -0.870 5.870 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.533 3.467 15 O -0.594 6.594 16 C 0.061 3.939 17 C -0.197 4.197 18 C -0.003 4.003 19 N -0.290 5.290 20 N -0.282 5.282 21 C 0.100 3.900 22 C -0.019 4.019 23 C -0.115 4.115 24 C -0.038 4.038 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.271 0.729 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -0.265 -5.195 5.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.025 4.025 4 C -0.019 4.019 5 N -0.127 5.127 6 C -0.443 4.443 7 H 0.098 0.902 8 C -0.152 4.152 9 N -0.508 5.508 10 Si 0.744 3.256 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.319 3.681 15 O -0.478 6.478 16 C -0.067 4.067 17 C -0.207 4.207 18 C -0.163 4.163 19 N -0.120 5.120 20 N -0.069 5.069 21 C -0.040 4.040 22 C -0.058 4.058 23 C -0.153 4.153 24 C -0.076 4.076 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.976 -0.409 -5.600 6.354 hybrid contribution 0.183 -0.408 0.655 0.794 sum -2.793 -0.817 -4.944 5.737 Atomic orbital electron populations 1.22654 0.83484 1.01740 0.98841 1.88156 1.17280 1.27723 1.95030 1.23050 0.96702 0.84241 0.98552 1.21867 0.88848 0.99618 0.91614 1.43240 1.54841 1.07391 1.07187 1.19119 1.33781 0.82330 1.09044 0.90187 1.25390 0.94531 0.99897 0.95379 1.69524 1.36124 1.36557 1.08611 0.86134 0.78864 0.82637 0.77927 1.19686 1.20725 1.19803 1.17395 0.81440 0.85729 0.83518 1.90671 1.57139 1.13842 1.86187 1.20607 0.90008 1.01841 0.94210 1.20816 0.94477 1.07680 0.97749 1.22521 0.92208 1.03387 0.98186 1.72480 1.05728 1.21807 1.12029 1.45517 1.07784 1.40338 1.13268 1.21959 0.74491 1.04127 1.03462 1.20283 0.86670 1.01878 0.96949 1.22362 0.96966 1.00134 0.95821 1.20218 0.88484 0.98871 1.00075 0.95068 0.95126 0.90401 0.93993 0.94599 0.84556 0.91273 0.91818 0.89711 0.89692 0.89192 0.91005 0.90492 0.90879 0.90538 0.90858 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.43 10.45 -35.23 -0.37 -7.80 16 3 C 0.05 1.05 6.24 37.16 0.23 1.28 16 4 C 0.10 2.44 5.29 -4.04 -0.02 2.42 16 5 N -0.41 -10.30 2.49 -116.17 -0.29 -10.59 16 6 C -0.31 -8.09 8.34 -15.01 -0.13 -8.22 16 7 H 0.08 2.09 7.46 -52.49 -0.39 1.70 16 8 C 0.05 1.35 5.36 -17.45 -0.09 1.26 16 9 N -0.87 -22.64 10.76 55.50 0.60 -22.04 16 10 Si 0.92 20.31 29.55 -169.99 -5.02 15.29 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 C 0.53 13.49 6.96 -12.70 -0.09 13.40 16 15 O -0.59 -16.06 16.76 5.22 0.09 -15.97 16 16 C 0.06 1.44 5.23 -82.14 -0.43 1.01 16 17 C -0.20 -4.29 7.02 -104.09 -0.73 -5.02 16 18 C 0.00 -0.06 8.13 -82.16 -0.67 -0.73 16 19 N -0.29 -6.06 11.91 33.78 0.40 -5.66 16 20 N -0.28 -5.94 3.75 -63.95 -0.24 -6.18 16 21 C 0.10 1.68 11.11 59.85 0.66 2.34 16 22 C -0.02 -0.28 6.76 -26.88 -0.18 -0.46 16 23 C -0.11 -1.61 7.07 -25.26 -0.18 -1.79 16 24 C -0.04 -0.69 6.76 -27.06 -0.18 -0.87 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.14 3.45 5.24 -51.93 -0.27 3.18 16 31 H 0.07 1.64 7.54 -51.93 -0.39 1.25 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -31.81 344.59 -6.43 -38.24 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.10 Total: 3.34 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.69 Total: 6.18 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.47 Total: -44.47 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.28 Total: -23.77 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.81 -6.43 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.773 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds