Wall clock time and date at job start Tue Mar 31 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99848 * 2 1 4 4 C 1.53004 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46935 * 64.99660 * 4 3 2 6 6 C 1.36842 * 119.99988 * 264.16960 * 5 4 3 7 7 H 1.08000 * 119.99684 * 135.52466 * 6 5 4 8 8 C 1.39051 * 120.00067 * 315.52890 * 6 5 4 9 9 N 1.31366 * 120.00230 * 2.57493 * 8 6 5 10 10 Si 1.86806 * 119.99906 * 182.56780 * 8 6 5 11 11 H 1.48498 * 109.47080 * 59.99867 * 10 8 6 12 12 H 1.48502 * 109.47180 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47241 * 300.00186 * 10 8 6 14 14 C 1.34770 * 119.99958 * 84.17527 * 5 4 3 15 15 O 1.21668 * 120.00253 * 4.42985 * 14 5 4 16 16 C 1.47026 * 120.00018 * 184.42975 * 14 5 4 17 17 C 1.38205 * 126.95536 * 260.95570 * 16 14 5 18 18 C 1.39501 * 105.70089 * 180.02562 * 17 16 14 19 19 N 1.31086 * 107.61449 * 359.97438 * 18 17 16 20 20 N 1.28448 * 110.99280 * 0.02562 * 19 18 17 21 21 C 1.46500 * 125.20124 * 180.02562 * 20 19 18 22 22 C 1.51274 * 109.37339 * 179.97438 * 18 17 16 23 23 C 1.54375 * 105.27511 * 17.13413 * 22 18 17 24 24 C 1.50852 * 144.40611 * 0.05041 * 17 16 14 25 25 H 1.08994 * 109.46959 * 300.00828 * 1 2 3 26 26 H 1.09008 * 109.46561 * 60.00609 * 1 2 3 27 27 H 1.08998 * 109.47030 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47605 * 59.99873 * 3 2 1 29 29 H 1.08996 * 109.47276 * 299.99154 * 3 2 1 30 30 H 1.09004 * 109.46705 * 305.00349 * 4 3 2 31 31 H 1.09001 * 109.47554 * 184.99837 * 4 3 2 32 32 H 0.96993 * 119.99797 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.46924 * 95.09425 * 21 20 19 34 34 H 1.09001 * 109.46765 * 215.09690 * 21 20 19 35 35 H 1.08996 * 109.46787 * 335.09854 * 21 20 19 36 36 H 1.09003 * 110.27933 * 136.08148 * 22 18 17 37 37 H 1.08994 * 110.28322 * 258.18019 * 22 18 17 38 38 H 1.09006 * 110.78373 * 91.96646 * 23 22 18 39 39 H 1.09000 * 110.77840 * 215.40498 * 23 22 18 40 40 H 1.08998 * 110.30935 * 44.00796 * 24 17 16 41 41 H 1.08998 * 110.38435 * 281.89306 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2127 -0.7831 -1.3005 7 1 3.8468 -1.3650 -2.1335 8 6 4.9235 -1.4025 -0.2784 9 7 5.3247 -0.7042 0.7594 10 14 5.3077 -3.2277 -0.3811 11 1 6.1192 -3.4952 -1.5957 12 1 6.0692 -3.6419 0.8247 13 1 4.0397 -3.9973 -0.4538 14 6 4.1503 1.3195 -2.3533 15 8 4.0190 2.5274 -2.2898 16 6 4.4983 0.6842 -3.6327 17 6 5.7566 0.5835 -4.1952 18 6 5.5781 -0.0961 -5.4004 19 7 4.3009 -0.3665 -5.5179 20 7 3.6424 0.0736 -4.5066 21 6 2.1957 -0.0594 -4.3181 22 6 6.9149 -0.2525 -6.0910 23 6 7.9714 0.0064 -4.9956 24 6 7.2150 0.9202 -4.0070 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1766 0.0902 32 1 5.8209 -1.1363 1.4721 33 1 1.9880 -0.9396 -3.7096 34 1 1.8117 0.8285 -3.8158 35 1 1.7112 -0.1661 -5.2886 36 1 7.0201 -1.2630 -6.4861 37 1 7.0141 0.4796 -6.8924 38 1 8.2650 -0.9260 -4.5133 39 1 8.8397 0.5192 -5.4094 40 1 7.5234 0.7071 -2.9835 41 1 7.3966 1.9681 -4.2456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909561237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:04 Heat of formation + Delta-G solvation = -4.714983 kcal Electronic energy + Delta-G solvation = -25023.017869 eV Core-core repulsion = 21518.805629 eV Total energy + Delta-G solvation = -3504.212240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.47675 -40.42401 -38.54527 -37.75408 -36.71721 -33.59828 -33.07923 -31.98512 -30.59282 -28.33662 -27.33405 -27.30910 -26.59375 -24.60417 -22.84918 -21.87893 -21.12629 -20.60773 -18.89434 -18.13987 -17.36400 -17.21031 -16.97939 -16.65831 -16.34725 -16.09220 -15.85987 -15.71098 -15.24172 -14.86949 -14.53440 -13.78941 -13.70722 -13.61095 -13.52597 -13.45008 -13.40159 -13.14545 -12.82490 -12.64002 -12.60418 -12.49514 -12.14507 -11.98668 -11.82773 -11.75153 -11.28290 -11.10806 -10.77003 -10.51833 -9.79414 -9.52983 -9.37143 -8.26745 -6.16782 0.85891 1.28407 1.40640 1.47706 1.50096 1.73964 1.94635 2.28908 2.81247 3.00517 3.07751 3.08627 3.90063 3.97994 4.07618 4.19580 4.23079 4.27340 4.32876 4.41457 4.44489 4.51638 4.53486 4.58855 4.61393 4.76261 4.81907 4.85647 4.91424 4.97335 5.13833 5.21973 5.25123 5.32750 5.44066 5.53664 5.70400 5.92068 6.02545 6.35486 6.40278 7.04592 7.21309 7.39423 7.81843 8.71244 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.007381 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.591348 B = 3792.387281 C = 4602.570078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.100 3.900 5 N -0.412 5.412 6 C -0.322 4.322 7 H 0.072 0.928 8 C 0.015 3.985 9 N -0.891 5.891 10 Si 0.976 3.024 11 H -0.274 1.274 12 H -0.273 1.273 13 H -0.268 1.268 14 C 0.529 3.471 15 O -0.624 6.624 16 C 0.022 3.978 17 C -0.223 4.223 18 C -0.007 4.007 19 N -0.297 5.297 20 N -0.285 5.285 21 C 0.095 3.905 22 C -0.016 4.016 23 C -0.101 4.101 24 C -0.045 4.045 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.274 0.726 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.050 0.950 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 -1.539 -6.447 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.023 4.023 5 N -0.128 5.128 6 C -0.450 4.450 7 H 0.090 0.910 8 C -0.188 4.188 9 N -0.529 5.529 10 Si 0.799 3.201 11 H -0.199 1.199 12 H -0.198 1.198 13 H -0.193 1.193 14 C 0.315 3.685 15 O -0.512 6.512 16 C -0.106 4.106 17 C -0.233 4.233 18 C -0.167 4.167 19 N -0.128 5.128 20 N -0.073 5.073 21 C -0.044 4.044 22 C -0.055 4.055 23 C -0.138 4.138 24 C -0.083 4.083 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.676 -1.693 -6.839 7.537 hybrid contribution 0.029 0.019 1.071 1.071 sum -2.647 -1.674 -5.769 6.564 Atomic orbital electron populations 1.22899 0.80589 1.03347 1.00350 1.88085 1.20467 1.27601 1.95311 1.22796 0.94256 0.84685 0.99498 1.21842 0.91512 0.98310 0.90653 1.43376 1.54499 1.07377 1.07534 1.19129 1.34342 0.82527 1.09004 0.91020 1.26092 0.94218 1.03536 0.94917 1.69637 1.36343 1.37956 1.08981 0.85263 0.78714 0.78158 0.77921 1.19904 1.19789 1.19289 1.17668 0.80981 0.85454 0.84353 1.90618 1.58641 1.15032 1.86866 1.20592 0.91644 1.04028 0.94364 1.21530 0.95542 1.07684 0.98575 1.23474 0.93203 1.01996 0.98038 1.72452 1.06479 1.21948 1.11893 1.45827 1.08783 1.39932 1.12742 1.22179 0.72994 1.03843 1.05388 1.20544 0.83570 1.03982 0.97392 1.22390 0.97556 0.99536 0.94354 1.20419 0.87084 1.00585 1.00209 0.93071 0.94009 0.88815 0.91217 0.95258 0.86136 0.92584 0.91568 0.89705 0.90204 0.85875 0.88925 0.87859 0.90856 0.86486 0.93093 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.40 -16.06 10.45 -148.98 -1.56 -17.62 16 3 C 0.07 2.65 6.24 71.98 0.45 3.10 16 4 C 0.10 4.87 5.29 86.38 0.46 5.32 16 5 N -0.41 -21.40 2.49 -639.69 -1.59 -22.99 16 6 C -0.32 -16.91 8.34 84.11 0.70 -16.20 16 7 H 0.07 3.84 7.46 -2.91 -0.02 3.81 16 8 C 0.02 0.78 5.36 84.96 0.45 1.23 16 9 N -0.89 -47.07 10.76 21.68 0.23 -46.84 16 10 Si 0.98 41.49 29.55 68.60 2.03 43.51 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 14 C 0.53 27.77 6.96 86.55 0.60 28.37 16 15 O -0.62 -35.24 16.76 -4.25 -0.07 -35.31 16 16 C 0.02 1.03 5.23 40.68 0.21 1.25 16 17 C -0.22 -9.74 7.02 -19.52 -0.14 -9.88 16 18 C -0.01 -0.28 8.13 43.16 0.35 0.07 16 19 N -0.30 -12.16 11.91 -47.04 -0.56 -12.72 16 20 N -0.29 -12.07 3.75 -356.24 -1.34 -13.41 16 21 C 0.10 3.19 11.11 127.77 1.42 4.61 16 22 C -0.02 -0.42 6.76 30.50 0.21 -0.22 16 23 C -0.10 -2.52 7.07 31.54 0.22 -2.29 16 24 C -0.04 -1.59 6.76 30.38 0.21 -1.38 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 6.30 5.24 -2.39 -0.01 6.29 16 31 H 0.06 2.80 7.54 -2.39 -0.02 2.78 16 32 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 35 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -70.61 344.59 4.56 -66.04 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.03 Total: 23.43 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.39 Total: 15.91 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -3.26 Total: -95.96 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -1.63 Total: -52.93 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -70.61 4.56 -66.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.330 kcal (2) G-P(sol) polarization free energy of solvation -70.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds