Wall clock time and date at job start Tue Mar 31 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99652 * 2 1 4 4 H 1.48505 * 109.46814 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.47284 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.46826 * 150.00612 * 3 2 1 7 7 C 1.37868 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99909 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00141 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97594 * 125.00158 * 10 9 7 12 12 C 1.35243 * 107.85916 * 180.02562 * 11 10 9 13 13 C 1.40404 * 107.86598 * 359.97438 * 12 11 10 14 14 N 1.40196 * 125.97090 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00152 * 0.02562 * 14 13 12 16 16 O 1.21596 * 119.99621 * 5.20473 * 15 14 13 17 17 N 1.34773 * 120.00177 * 185.20862 * 15 14 13 18 18 C 1.46928 * 120.62702 * 354.96925 * 17 15 14 19 19 C 1.53195 * 108.77719 * 126.37107 * 18 17 15 20 20 C 1.53040 * 109.31605 * 54.62892 * 19 18 17 21 21 C 1.53049 * 109.52588 * 298.64768 * 20 19 18 22 22 H 1.09005 * 109.49357 * 301.40034 * 21 20 19 23 23 N 1.46898 * 109.49735 * 181.31129 * 21 20 19 24 24 C 1.46923 * 120.63050 * 174.94020 * 17 15 14 25 25 N 1.31207 * 108.05831 * 0.26490 * 13 12 11 26 26 H 0.96998 * 120.00228 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46882 * 60.00037 * 9 7 2 28 28 H 1.08998 * 109.47222 * 300.00571 * 9 7 2 29 29 H 1.08004 * 126.07086 * 359.97438 * 11 10 9 30 30 H 1.07994 * 126.06771 * 180.02562 * 12 11 10 31 31 H 0.96998 * 119.99982 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.59130 * 6.57487 * 18 17 15 33 33 H 1.09002 * 109.58259 * 246.15195 * 18 17 15 34 34 H 1.09001 * 109.49274 * 294.68106 * 19 18 17 35 35 H 1.08996 * 109.49960 * 174.58347 * 19 18 17 36 36 H 1.08997 * 109.45795 * 58.65653 * 20 19 18 37 37 H 1.08992 * 109.46458 * 178.63310 * 20 19 18 38 38 H 1.00902 * 110.99927 * 179.97438 * 23 21 20 39 39 H 1.00906 * 110.99914 * 303.95178 * 23 21 20 40 40 H 1.08994 * 109.58864 * 353.41665 * 24 17 15 41 41 H 1.09004 * 109.58669 * 113.70497 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.8546 -3.1132 -0.8976 12 6 5.0553 -4.4059 -0.5544 13 6 4.2946 -4.6692 0.5960 14 7 4.2240 -5.8944 1.2738 15 6 4.9291 -6.9529 0.8279 16 8 5.6988 -6.8216 -0.1042 17 7 4.7811 -8.1569 1.4151 18 6 3.9398 -8.3085 2.6102 19 6 2.9142 -9.4172 2.3537 20 6 3.6442 -10.6947 1.9327 21 6 4.4148 -10.4395 0.6353 22 1 3.7214 -10.1205 -0.1429 23 7 5.0898 -11.6747 0.2149 24 6 5.4574 -9.3428 0.8721 25 7 3.6574 -3.5698 0.9227 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 5.2986 -2.6024 -1.7393 30 1 5.6890 -5.1102 -1.0726 31 1 3.6676 -5.9803 2.0637 32 1 3.4218 -7.3714 2.8137 33 1 4.5625 -8.5771 3.4636 34 1 2.2350 -9.1078 1.5593 35 1 2.3469 -9.6059 3.2651 36 1 4.3413 -10.9898 2.7170 37 1 2.9184 -11.4920 1.7731 38 1 5.6056 -11.5318 -0.6405 39 1 5.6910 -12.0249 0.9458 40 1 5.9406 -9.0881 -0.0711 41 1 6.2056 -9.6943 1.5828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926037849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:21 Heat of formation + Delta-G solvation = 67.391168 kcal Electronic energy + Delta-G solvation = -23240.312999 eV Core-core repulsion = 19771.520268 eV Total energy + Delta-G solvation = -3468.792731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98833 -40.07123 -38.06606 -35.02670 -34.49956 -33.20545 -32.42022 -31.19864 -29.41536 -28.64904 -27.17641 -25.65417 -23.04909 -22.75579 -21.69089 -20.72880 -20.10462 -19.23982 -18.09788 -17.07127 -16.62969 -16.26505 -15.91336 -15.82436 -15.03981 -14.87146 -14.72249 -14.40141 -14.24684 -13.77299 -13.39415 -13.32696 -13.09157 -13.00072 -12.52454 -12.30846 -12.11291 -11.83700 -11.36657 -11.33872 -11.16350 -10.88955 -10.77104 -10.64987 -10.11784 -9.99771 -9.75985 -9.52270 -9.50806 -8.76525 -8.69736 -8.16255 -7.46840 -6.23206 -4.25396 2.25228 2.57972 3.02737 3.15194 3.21593 3.23024 3.32761 3.76992 3.95197 4.12758 4.23251 4.41938 4.50503 4.62793 4.64503 4.90765 5.04459 5.10293 5.18737 5.34932 5.38204 5.43127 5.50764 5.65409 5.70617 5.78592 5.94960 6.05646 6.24648 6.36109 6.46529 6.57791 6.68757 6.76241 6.84861 7.01946 7.27823 7.42631 7.78946 7.84528 8.34391 8.51661 8.59399 8.86818 9.31895 10.89541 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.003010 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.963498 B = 9299.586638 C = 9814.104467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.643 5.643 15 C 0.718 3.282 16 O -0.567 6.567 17 N -0.624 5.624 18 C 0.107 3.893 19 C -0.136 4.136 20 C -0.111 4.111 21 C 0.075 3.925 22 H 0.087 0.913 23 N -0.839 5.839 24 C 0.100 3.900 25 N -0.300 5.300 26 H 0.268 0.732 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.406 0.594 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.345 0.655 39 H 0.340 0.660 40 H 0.094 0.906 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 -19.773 4.456 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.314 4.314 13 C 0.023 3.977 14 N -0.295 5.295 15 C 0.418 3.582 16 O -0.443 6.443 17 N -0.363 5.363 18 C -0.016 4.016 19 C -0.174 4.174 20 C -0.149 4.149 21 C -0.038 4.038 22 H 0.105 0.895 23 N -0.368 5.368 24 C -0.025 4.025 25 N -0.131 5.131 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.186 0.814 30 H 0.179 0.821 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.112 0.888 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.424 -19.202 4.524 21.863 hybrid contribution 1.349 1.145 0.029 1.769 sum 10.773 -18.057 4.554 21.514 Atomic orbital electron populations 1.69875 1.06157 1.27287 1.49243 1.24834 0.94868 0.98794 0.94276 0.86907 0.80443 0.83832 0.78925 1.19706 1.20547 1.18855 1.21114 0.87817 0.95701 1.52567 0.89643 1.20037 0.97428 0.73041 0.98162 1.48592 1.32535 1.10130 1.18971 1.22542 0.96007 0.94637 0.96627 1.21511 1.11564 0.96721 1.01565 1.18813 0.98651 0.85941 0.94268 1.41588 1.49124 1.07343 1.31471 1.15523 0.80710 0.79812 0.82117 1.90850 1.39767 1.83033 1.30646 1.47119 1.51967 1.06543 1.30647 1.21735 0.92750 0.99766 0.87390 1.21927 0.97934 0.94843 1.02741 1.21525 0.99558 0.97679 0.96127 1.21889 0.95802 0.87906 0.98197 0.89474 1.58970 1.38886 1.29796 1.09103 1.22430 0.95023 0.84635 1.00441 1.77382 1.23825 0.95527 1.16317 0.92191 0.94067 0.93343 0.81409 0.82110 0.75585 0.90090 0.90943 0.90889 0.90064 0.91878 0.90694 0.84187 0.84786 0.88783 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.53 -15.11 9.79 -34.44 -0.34 -15.45 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.53 5.33 -5.19 -0.03 5.51 16 10 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 12 C -0.28 -5.61 9.61 -39.83 -0.38 -6.00 16 13 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 14 N -0.64 -10.38 5.36 -15.51 -0.08 -10.46 16 15 C 0.72 10.97 8.26 -86.92 -0.72 10.25 16 16 O -0.57 -10.33 12.93 5.28 0.07 -10.26 16 17 N -0.62 -6.80 2.97 -178.51 -0.53 -7.34 16 18 C 0.11 0.85 6.43 -3.71 -0.02 0.82 16 19 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 20 C -0.11 -0.73 5.43 -26.69 -0.14 -0.88 16 21 C 0.07 0.58 3.40 -67.60 -0.23 0.35 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 N -0.84 -5.41 9.26 -4.57 -0.04 -5.45 16 24 C 0.10 0.91 5.99 -3.73 -0.02 0.88 16 25 N -0.30 -6.94 12.42 31.44 0.39 -6.55 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 28 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 29 H 0.17 2.59 8.06 -52.48 -0.42 2.17 16 30 H 0.16 3.14 5.93 -52.49 -0.31 2.83 16 31 H 0.41 5.49 6.28 -40.82 -0.26 5.23 16 32 H 0.08 0.64 5.57 -51.93 -0.29 0.35 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.35 1.98 9.04 -39.29 -0.36 1.62 16 39 H 0.34 1.68 8.98 -39.29 -0.35 1.33 16 40 H 0.09 1.01 7.03 -51.93 -0.37 0.65 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -34.35 333.06 -8.56 -42.91 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.66 Total: 8.45 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.59 Total: 1.64 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.28 Total: -63.25 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.35 -8.56 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926037849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.300 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds