Wall clock time and date at job start Tue Mar 31 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99652 * 2 1 4 4 H 1.48505 * 109.46814 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.47284 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.46826 * 150.00612 * 3 2 1 7 7 C 1.37868 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99909 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00141 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97594 * 125.00158 * 10 9 7 12 12 C 1.35243 * 107.85916 * 180.02562 * 11 10 9 13 13 C 1.40404 * 107.86598 * 359.97438 * 12 11 10 14 14 N 1.40196 * 125.97090 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00152 * 0.02562 * 14 13 12 16 16 O 1.21596 * 119.99621 * 5.20473 * 15 14 13 17 17 N 1.34773 * 120.00177 * 185.20862 * 15 14 13 18 18 C 1.46928 * 120.62702 * 354.96925 * 17 15 14 19 19 C 1.53195 * 108.77719 * 126.37107 * 18 17 15 20 20 C 1.53040 * 109.31605 * 54.62892 * 19 18 17 21 21 C 1.53049 * 109.52588 * 298.64768 * 20 19 18 22 22 H 1.09005 * 109.49357 * 301.40034 * 21 20 19 23 23 N 1.46898 * 109.49735 * 181.31129 * 21 20 19 24 24 C 1.46923 * 120.63050 * 174.94020 * 17 15 14 25 25 N 1.31207 * 108.05831 * 0.26490 * 13 12 11 26 26 H 0.96998 * 120.00228 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46882 * 60.00037 * 9 7 2 28 28 H 1.08998 * 109.47222 * 300.00571 * 9 7 2 29 29 H 1.08004 * 126.07086 * 359.97438 * 11 10 9 30 30 H 1.07994 * 126.06771 * 180.02562 * 12 11 10 31 31 H 0.96998 * 119.99982 * 180.02562 * 14 13 12 32 32 H 1.08998 * 109.59130 * 6.57487 * 18 17 15 33 33 H 1.09002 * 109.58259 * 246.15195 * 18 17 15 34 34 H 1.09001 * 109.49274 * 294.68106 * 19 18 17 35 35 H 1.08996 * 109.49960 * 174.58347 * 19 18 17 36 36 H 1.08997 * 109.45795 * 58.65653 * 20 19 18 37 37 H 1.08992 * 109.46458 * 178.63310 * 20 19 18 38 38 H 1.00902 * 110.99927 * 179.97438 * 23 21 20 39 39 H 1.00906 * 110.99914 * 303.95178 * 23 21 20 40 40 H 1.08994 * 109.58864 * 353.41665 * 24 17 15 41 41 H 1.09004 * 109.58669 * 113.70497 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0022 11 6 4.8546 -3.1132 -0.8976 12 6 5.0553 -4.4059 -0.5544 13 6 4.2946 -4.6692 0.5960 14 7 4.2240 -5.8944 1.2738 15 6 4.9291 -6.9529 0.8279 16 8 5.6988 -6.8216 -0.1042 17 7 4.7811 -8.1569 1.4151 18 6 3.9398 -8.3085 2.6102 19 6 2.9142 -9.4172 2.3537 20 6 3.6442 -10.6947 1.9327 21 6 4.4148 -10.4395 0.6353 22 1 3.7214 -10.1205 -0.1429 23 7 5.0898 -11.6747 0.2149 24 6 5.4574 -9.3428 0.8721 25 7 3.6574 -3.5698 0.9227 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 5.2986 -2.6024 -1.7393 30 1 5.6890 -5.1102 -1.0726 31 1 3.6676 -5.9803 2.0637 32 1 3.4218 -7.3714 2.8137 33 1 4.5625 -8.5771 3.4636 34 1 2.2350 -9.1078 1.5593 35 1 2.3469 -9.6059 3.2651 36 1 4.3413 -10.9898 2.7170 37 1 2.9184 -11.4920 1.7731 38 1 5.6056 -11.5318 -0.6405 39 1 5.6910 -12.0249 0.9458 40 1 5.9406 -9.0881 -0.0711 41 1 6.2056 -9.6943 1.5828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926037849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:21 Heat of formation + Delta-G solvation = 41.494575 kcal Electronic energy + Delta-G solvation = -23241.435959 eV Core-core repulsion = 19771.520268 eV Total energy + Delta-G solvation = -3469.915692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.35096 -41.33453 -38.99584 -36.35376 -35.59550 -34.96880 -33.22678 -32.91206 -31.00472 -29.48812 -28.83072 -26.61033 -24.55130 -23.69641 -22.95398 -22.03121 -21.32527 -20.43245 -19.20594 -19.09109 -18.12531 -17.32127 -16.95343 -16.79921 -16.46072 -16.05605 -15.72485 -15.50759 -15.38809 -15.06114 -14.82206 -14.37649 -14.26743 -14.05449 -13.94930 -13.80632 -13.58897 -13.01149 -12.53685 -12.47299 -12.33383 -11.98316 -11.95912 -11.83530 -11.64254 -11.52858 -11.47997 -11.11228 -10.86776 -10.24519 -9.79279 -9.47154 -9.02486 -8.37384 -6.47702 1.01975 1.05704 1.36878 1.40014 1.49754 1.64387 1.97590 2.29212 2.33846 2.75300 2.95272 3.51989 3.76008 3.84499 3.92476 3.98850 3.99995 4.18824 4.26279 4.45875 4.53404 4.60519 4.66796 4.75525 4.79896 4.84401 4.88488 4.91832 5.06885 5.11930 5.22738 5.24377 5.37383 5.45838 5.66742 5.89137 6.00975 6.17523 6.40584 6.52561 6.57183 6.60055 7.04934 7.15399 7.31239 8.79793 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031632 B = 0.003010 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.963498 B = 9299.586638 C = 9814.104467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.547 4.547 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.063 3.937 12 C -0.294 4.294 13 C 0.282 3.718 14 N -0.639 5.639 15 C 0.711 3.289 16 O -0.600 6.600 17 N -0.614 5.614 18 C 0.100 3.900 19 C -0.131 4.131 20 C -0.106 4.106 21 C 0.083 3.917 22 H 0.062 0.938 23 N -0.839 5.839 24 C 0.100 3.900 25 N -0.349 5.349 26 H 0.272 0.728 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.212 0.788 30 H 0.166 0.834 31 H 0.417 0.583 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.349 0.651 39 H 0.351 0.649 40 H 0.073 0.927 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.689 -19.953 5.018 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.085 4.085 12 C -0.325 4.325 13 C 0.027 3.973 14 N -0.293 5.293 15 C 0.412 3.588 16 O -0.479 6.479 17 N -0.351 5.351 18 C -0.022 4.022 19 C -0.170 4.170 20 C -0.144 4.144 21 C -0.030 4.030 22 H 0.081 0.919 23 N -0.369 5.369 24 C -0.025 4.025 25 N -0.179 5.179 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.228 0.772 30 H 0.183 0.817 31 H 0.256 0.744 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.092 0.908 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.497 -19.469 5.119 23.182 hybrid contribution 0.670 0.965 -0.135 1.182 sum 12.166 -18.504 4.984 22.699 Atomic orbital electron populations 1.70052 1.08582 1.28812 1.50716 1.25925 0.95769 1.03547 0.93206 0.85612 0.79505 0.77161 0.80072 1.17740 1.20622 1.16215 1.21234 0.90517 0.93741 1.53014 0.95563 1.19894 0.94157 0.74308 0.99665 1.48505 1.34005 1.09981 1.20172 1.23233 0.94305 0.94530 0.96472 1.21696 1.11938 0.97195 1.01711 1.19157 0.97350 0.86521 0.94318 1.41633 1.49513 1.06436 1.31694 1.15740 0.80349 0.80628 0.82039 1.90811 1.41147 1.83746 1.32164 1.47246 1.51641 1.05371 1.30884 1.22027 0.93102 1.00277 0.86783 1.21909 0.97426 0.94461 1.03183 1.21502 0.99692 0.97389 0.95780 1.21738 0.95163 0.87871 0.98224 0.91927 1.58962 1.39412 1.28775 1.09749 1.22606 0.95755 0.84059 1.00070 1.77299 1.25915 0.96703 1.18028 0.91874 0.93623 0.90008 0.77165 0.81702 0.74357 0.90308 0.88333 0.92756 0.87807 0.90035 0.90664 0.83787 0.83476 0.90805 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 40.77 27.47 68.60 1.88 42.66 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 7 C -0.55 -31.78 9.79 25.60 0.25 -31.53 16 8 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 9 C 0.24 11.18 5.33 85.63 0.46 11.63 16 10 N -0.34 -15.71 3.67 -351.83 -1.29 -17.01 16 11 C 0.06 2.37 11.44 83.52 0.96 3.32 16 12 C -0.29 -11.65 9.61 22.11 0.21 -11.43 16 13 C 0.28 11.68 8.11 133.31 1.08 12.76 16 14 N -0.64 -20.89 5.36 -321.23 -1.72 -22.62 16 15 C 0.71 21.78 8.26 179.06 1.48 23.26 16 16 O -0.60 -22.08 12.93 -4.02 -0.05 -22.13 16 17 N -0.61 -12.87 2.97 -836.96 -2.49 -15.36 16 18 C 0.10 1.42 6.43 86.36 0.56 1.97 16 19 C -0.13 -1.56 6.08 30.67 0.19 -1.38 16 20 C -0.11 -1.16 5.43 30.62 0.17 -1.00 16 21 C 0.08 1.19 3.40 44.99 0.15 1.34 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 N -0.84 -9.54 9.26 -168.38 -1.56 -11.09 16 24 C 0.10 1.70 5.99 86.35 0.52 2.21 16 25 N -0.35 -16.55 12.42 -54.43 -0.68 -17.22 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.05 2.08 7.20 -2.38 -0.02 2.07 16 28 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 29 H 0.21 5.82 8.06 -2.91 -0.02 5.80 16 30 H 0.17 6.41 5.93 -2.91 -0.02 6.39 16 31 H 0.42 11.41 6.28 -92.71 -0.58 10.83 16 32 H 0.08 1.16 5.57 -2.39 -0.01 1.15 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.35 3.65 9.04 -89.69 -0.81 2.83 16 39 H 0.35 2.66 8.98 -89.69 -0.81 1.85 16 40 H 0.07 1.59 7.03 -2.39 -0.02 1.57 16 41 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -78.57 333.06 -0.30 -78.87 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -1.17 Total: 29.45 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.48 Total: 12.44 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -7.44 Total: -141.29 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.88 Total: 42.66 kcal Total: -78.57 -0.30 -78.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926037849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.365 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds