Wall clock time and date at job start Tue Mar 31 2020 03:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.70026 * 2 1 4 4 C 1.53198 * 109.58435 * 239.64774 * 2 1 3 5 5 C 1.53036 * 109.31205 * 185.57488 * 4 2 1 6 6 H 1.09003 * 109.46218 * 301.34523 * 5 4 2 7 7 N 1.46498 * 109.46007 * 181.38775 * 5 4 2 8 8 C 1.34779 * 119.99979 * 154.93188 * 7 5 4 9 9 O 1.21594 * 120.00002 * 0.02562 * 8 7 5 10 10 C 1.47523 * 119.99780 * 180.02562 * 8 7 5 11 11 C 1.36599 * 125.77125 * 180.02562 * 10 8 7 12 12 N 1.34815 * 106.84199 * 179.97438 * 11 10 8 13 13 C 1.46501 * 126.59573 * 179.97438 * 12 11 10 14 14 N 1.40209 * 106.80787 * 359.97438 * 12 11 10 15 15 N 1.28764 * 108.36867 * 359.75147 * 14 12 11 16 16 C 1.53039 * 109.53975 * 61.36491 * 5 4 2 17 17 C 1.53192 * 109.31500 * 298.63840 * 16 5 4 18 18 N 1.46921 * 108.77716 * 54.62899 * 17 16 5 19 19 C 1.36935 * 120.63039 * 126.41625 * 18 17 16 20 20 H 1.08004 * 119.99871 * 208.99632 * 19 18 17 21 21 C 1.38814 * 119.99884 * 28.99749 * 19 18 17 22 22 N 1.31612 * 120.00200 * 15.03459 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 195.03093 * 21 19 18 24 24 H 1.48503 * 109.47280 * 59.99851 * 23 21 19 25 25 H 1.48501 * 109.47190 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47276 * 300.00228 * 23 21 19 27 27 H 1.08996 * 109.46989 * 180.35559 * 1 2 3 28 28 H 1.08999 * 109.46902 * 300.34849 * 1 2 3 29 29 H 1.08992 * 109.47235 * 60.34992 * 1 2 3 30 30 H 1.09002 * 109.49612 * 65.62489 * 4 2 1 31 31 H 1.08991 * 109.52557 * 305.54699 * 4 2 1 32 32 H 0.97003 * 119.99993 * 334.93363 * 7 5 4 33 33 H 1.08005 * 126.57858 * 359.97438 * 11 10 8 34 34 H 1.09003 * 109.46532 * 89.99751 * 13 12 11 35 35 H 1.08998 * 109.47222 * 209.99858 * 13 12 11 36 36 H 1.08998 * 109.46548 * 330.00049 * 13 12 11 37 37 H 1.09005 * 109.49562 * 58.58851 * 16 5 4 38 38 H 1.08993 * 109.49979 * 178.68078 * 16 5 4 39 39 H 1.08993 * 109.58969 * 174.41839 * 17 16 5 40 40 H 1.09001 * 109.58344 * 294.84356 * 17 16 5 41 41 H 0.96996 * 120.00390 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 1 4.0061 0.1474 -1.0995 7 7 4.0651 -1.5156 -2.3756 8 6 5.3289 -1.3008 -2.7918 9 8 6.0561 -0.5533 -2.1667 10 6 5.8298 -1.9727 -4.0059 11 6 7.0838 -1.8415 -4.5314 12 7 7.1292 -2.6181 -5.6325 13 6 8.2746 -2.7976 -6.5281 14 7 5.8693 -3.2208 -5.7556 15 7 5.1317 -2.8227 -4.7782 16 6 3.9570 -1.6657 0.0632 17 6 3.4651 -0.9470 1.3236 18 7 2.0227 -0.6996 1.1944 19 6 1.1539 -1.1128 2.1689 20 1 0.1360 -1.3671 1.9124 21 6 1.5815 -1.2049 3.4863 22 7 2.7047 -0.6268 3.8556 23 14 0.5627 -2.1493 4.7351 24 1 0.4329 -3.5634 4.3003 25 1 1.2312 -2.0977 6.0601 26 1 -0.7865 -1.5373 4.8377 27 1 -0.3633 -1.0276 0.0064 28 1 -0.3633 0.5192 0.8868 29 1 -0.3633 0.5083 -0.8930 30 1 1.7659 -0.1667 -2.1369 31 1 1.6030 -1.7252 -1.2921 32 1 3.4850 -2.1122 -2.8742 33 1 7.8852 -1.2324 -4.1399 34 1 8.8812 -3.6331 -6.1789 35 1 7.9180 -3.0041 -7.5371 36 1 8.8767 -1.8890 -6.5343 37 1 3.4984 -2.6528 0.0049 38 1 5.0412 -1.7695 0.1033 39 1 3.6519 -1.5719 2.1969 40 1 3.9904 0.0019 1.4315 41 1 3.0033 -0.6908 4.7762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947262014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:10 Heat of formation + Delta-G solvation = 81.671013 kcal Electronic energy + Delta-G solvation = -23537.238434 eV Core-core repulsion = 20069.064923 eV Total energy + Delta-G solvation = -3468.173511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.36446 -39.43497 -37.53704 -34.96188 -34.47693 -32.36626 -31.53023 -30.88220 -29.46405 -28.09016 -26.31890 -24.94480 -23.61547 -22.45159 -21.87894 -20.95685 -19.98436 -19.30492 -18.08831 -16.49078 -16.41631 -16.08554 -15.83815 -15.05747 -14.78238 -14.62848 -14.11046 -13.89244 -13.63697 -13.57329 -13.41052 -13.19376 -12.73861 -12.59693 -12.33908 -11.54397 -11.48805 -11.15793 -11.04854 -10.87878 -10.84152 -10.64765 -10.60312 -10.27855 -10.11930 -9.99397 -9.93591 -9.67709 -9.47995 -9.34458 -8.63749 -8.36124 -6.58978 -5.71767 -3.15436 0.92297 1.63044 1.78264 3.31890 3.39935 3.42510 3.48144 3.48960 4.05957 4.09365 4.53765 4.53883 4.60911 4.80776 4.83539 5.12352 5.32929 5.44685 5.46976 5.63206 5.65904 5.85336 6.05795 6.05973 6.22356 6.32006 6.37959 6.48388 6.49760 6.58969 6.71298 6.85629 6.95260 7.08330 7.16034 7.45199 7.61372 7.75760 7.87307 7.87400 8.38634 8.52589 9.28051 9.91752 10.48711 11.36876 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.003212 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.054315 B = 8715.550622 C = 9008.125353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.083 0.917 7 N -0.707 5.707 8 C 0.599 3.401 9 O -0.539 6.539 10 C -0.095 4.095 11 C 0.090 3.910 12 N -0.367 5.367 13 C 0.088 3.912 14 N -0.070 5.070 15 N -0.204 5.204 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.070 0.930 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.206 0.794 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.020 0.980 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -2.729 -19.739 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.101 0.899 7 N -0.355 5.355 8 C 0.382 3.618 9 O -0.416 6.416 10 C -0.235 4.235 11 C -0.066 4.066 12 N -0.152 5.152 13 C -0.053 4.053 14 N -0.050 5.050 15 N -0.078 5.078 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.087 0.913 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.237 0.763 33 H 0.222 0.778 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.417 -3.130 -19.949 22.281 hybrid contribution 0.168 -0.214 0.848 0.891 sum 9.585 -3.344 -19.101 21.631 Atomic orbital electron populations 1.21792 0.95777 1.01468 1.00274 1.20359 0.93060 0.93562 0.86586 0.95515 1.22390 0.93573 1.01815 0.99676 1.21111 0.94396 0.96743 0.82968 0.89861 1.46140 1.12647 1.47946 1.28813 1.16765 0.82485 0.80691 0.81818 1.90818 1.56646 1.37722 1.56402 1.21679 0.93257 1.06265 1.02304 1.23404 0.99799 0.95410 0.88031 1.50369 1.13130 1.31878 1.19831 1.22183 0.84664 1.04421 0.94012 1.81989 0.86687 1.18605 1.17739 1.74629 1.25032 1.07690 1.00455 1.22590 0.99778 0.99685 0.96714 1.20761 0.83180 0.97311 0.93885 1.44167 1.03021 1.64906 1.19031 1.19142 0.94801 1.37753 0.86260 0.91265 1.25085 0.97835 0.99789 0.96959 1.70000 1.23327 1.44580 1.16911 0.86398 0.79618 0.80172 0.80711 1.21109 1.21735 1.20958 0.92728 0.91908 0.94283 0.92582 0.91665 0.76254 0.77767 0.89225 0.88134 0.88391 0.92577 0.92835 0.89135 0.96156 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.24 16 2 C 0.17 3.55 3.50 -67.59 -0.24 3.31 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.34 4.84 -26.61 -0.13 -2.47 16 5 C 0.15 2.72 2.42 -67.89 -0.16 2.56 16 6 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 7 N -0.71 -11.10 5.07 -54.81 -0.28 -11.38 16 8 C 0.60 9.58 7.78 -12.47 -0.10 9.48 16 9 O -0.54 -10.05 16.52 5.28 0.09 -9.96 16 10 C -0.10 -1.28 6.99 -83.55 -0.58 -1.86 16 11 C 0.09 0.89 11.31 -16.83 -0.19 0.70 16 12 N -0.37 -3.20 4.03 -67.85 -0.27 -3.47 16 13 C 0.09 0.27 11.51 59.85 0.69 0.96 16 14 N -0.07 -0.86 13.78 60.35 0.83 -0.03 16 15 N -0.20 -2.83 12.04 32.85 0.40 -2.43 16 16 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 17 C 0.17 4.27 5.29 -3.71 -0.02 4.25 16 18 N -0.59 -14.55 2.99 -164.77 -0.49 -15.04 16 19 C -0.25 -6.71 8.61 -15.06 -0.13 -6.84 16 20 H 0.07 1.80 6.20 -52.48 -0.33 1.48 16 21 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 22 N -0.90 -26.35 11.14 55.49 0.62 -25.74 16 23 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 28 H 0.06 1.26 7.66 -51.93 -0.40 0.87 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 5.69 8.29 -40.82 -0.34 5.35 16 33 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -33.52 338.25 -5.78 -39.31 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.94 Total: 2.24 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.80 Total: 4.66 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.80 Total: -58.08 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.52 -5.78 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.976 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds