Wall clock time and date at job start Tue Mar 31 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.70026 * 2 1 4 4 C 1.53198 * 109.58435 * 239.64774 * 2 1 3 5 5 C 1.53036 * 109.31205 * 185.57488 * 4 2 1 6 6 H 1.09003 * 109.46218 * 301.34523 * 5 4 2 7 7 N 1.46498 * 109.46007 * 181.38775 * 5 4 2 8 8 C 1.34779 * 119.99979 * 154.93188 * 7 5 4 9 9 O 1.21594 * 120.00002 * 0.02562 * 8 7 5 10 10 C 1.47523 * 119.99780 * 180.02562 * 8 7 5 11 11 C 1.36599 * 125.77125 * 180.02562 * 10 8 7 12 12 N 1.34815 * 106.84199 * 179.97438 * 11 10 8 13 13 C 1.46501 * 126.59573 * 179.97438 * 12 11 10 14 14 N 1.40209 * 106.80787 * 359.97438 * 12 11 10 15 15 N 1.28764 * 108.36867 * 359.75147 * 14 12 11 16 16 C 1.53039 * 109.53975 * 61.36491 * 5 4 2 17 17 C 1.53192 * 109.31500 * 298.63840 * 16 5 4 18 18 N 1.46921 * 108.77716 * 54.62899 * 17 16 5 19 19 C 1.36935 * 120.63039 * 126.41625 * 18 17 16 20 20 H 1.08004 * 119.99871 * 208.99632 * 19 18 17 21 21 C 1.38814 * 119.99884 * 28.99749 * 19 18 17 22 22 N 1.31612 * 120.00200 * 15.03459 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 195.03093 * 21 19 18 24 24 H 1.48503 * 109.47280 * 59.99851 * 23 21 19 25 25 H 1.48501 * 109.47190 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47276 * 300.00228 * 23 21 19 27 27 H 1.08996 * 109.46989 * 180.35559 * 1 2 3 28 28 H 1.08999 * 109.46902 * 300.34849 * 1 2 3 29 29 H 1.08992 * 109.47235 * 60.34992 * 1 2 3 30 30 H 1.09002 * 109.49612 * 65.62489 * 4 2 1 31 31 H 1.08991 * 109.52557 * 305.54699 * 4 2 1 32 32 H 0.97003 * 119.99993 * 334.93363 * 7 5 4 33 33 H 1.08005 * 126.57858 * 359.97438 * 11 10 8 34 34 H 1.09003 * 109.46532 * 89.99751 * 13 12 11 35 35 H 1.08998 * 109.47222 * 209.99858 * 13 12 11 36 36 H 1.08998 * 109.46548 * 330.00049 * 13 12 11 37 37 H 1.09005 * 109.49562 * 58.58851 * 16 5 4 38 38 H 1.08993 * 109.49979 * 178.68078 * 16 5 4 39 39 H 1.08993 * 109.58969 * 174.41839 * 17 16 5 40 40 H 1.09001 * 109.58344 * 294.84356 * 17 16 5 41 41 H 0.96996 * 120.00390 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 1 4.0061 0.1474 -1.0995 7 7 4.0651 -1.5156 -2.3756 8 6 5.3289 -1.3008 -2.7918 9 8 6.0561 -0.5533 -2.1667 10 6 5.8298 -1.9727 -4.0059 11 6 7.0838 -1.8415 -4.5314 12 7 7.1292 -2.6181 -5.6325 13 6 8.2746 -2.7976 -6.5281 14 7 5.8693 -3.2208 -5.7556 15 7 5.1317 -2.8227 -4.7782 16 6 3.9570 -1.6657 0.0632 17 6 3.4651 -0.9470 1.3236 18 7 2.0227 -0.6996 1.1944 19 6 1.1539 -1.1128 2.1689 20 1 0.1360 -1.3671 1.9124 21 6 1.5815 -1.2049 3.4863 22 7 2.7047 -0.6268 3.8556 23 14 0.5627 -2.1493 4.7351 24 1 0.4329 -3.5634 4.3003 25 1 1.2312 -2.0977 6.0601 26 1 -0.7865 -1.5373 4.8377 27 1 -0.3633 -1.0276 0.0064 28 1 -0.3633 0.5192 0.8868 29 1 -0.3633 0.5083 -0.8930 30 1 1.7659 -0.1667 -2.1369 31 1 1.6030 -1.7252 -1.2921 32 1 3.4850 -2.1122 -2.8742 33 1 7.8852 -1.2324 -4.1399 34 1 8.8812 -3.6331 -6.1789 35 1 7.9180 -3.0041 -7.5371 36 1 8.8767 -1.8890 -6.5343 37 1 3.4984 -2.6528 0.0049 38 1 5.0412 -1.7695 0.1033 39 1 3.6519 -1.5719 2.1969 40 1 3.9904 0.0019 1.4315 41 1 3.0033 -0.6908 4.7762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947262014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:09 Heat of formation + Delta-G solvation = 57.019506 kcal Electronic energy + Delta-G solvation = -23538.307404 eV Core-core repulsion = 20069.064923 eV Total energy + Delta-G solvation = -3469.242480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.21265 -40.79891 -39.15646 -36.13555 -35.57674 -34.19240 -33.01908 -32.06765 -31.09630 -28.73194 -27.91545 -26.71577 -24.88462 -23.61376 -23.15956 -22.34696 -21.37232 -20.91632 -19.17097 -18.20997 -17.31307 -17.20784 -17.09625 -16.80525 -15.87483 -15.70222 -15.63981 -15.51696 -15.10747 -14.84417 -14.52840 -14.36158 -14.01094 -13.95334 -13.31502 -13.14150 -12.91462 -12.70892 -12.66139 -12.59718 -12.34931 -12.27627 -12.09291 -11.84365 -11.69568 -11.48833 -11.40919 -11.32362 -11.01592 -10.52221 -10.40841 -9.96965 -8.61974 -7.80833 -5.26894 0.15037 0.60172 1.17956 1.49211 1.51594 1.57756 2.12120 2.24420 2.55098 3.18284 3.35071 3.49348 3.63236 3.85475 3.92551 3.97807 4.08973 4.29241 4.38777 4.41433 4.49688 4.63626 4.69160 4.72573 4.77726 4.78874 4.86216 4.97481 5.09573 5.11446 5.18316 5.41976 5.45249 5.48860 5.56307 5.58295 5.74497 5.76071 6.45600 6.46465 6.89828 7.16277 7.20254 7.92066 8.44730 9.26447 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.003212 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.054315 B = 8715.550622 C = 9008.125353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.016 0.984 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.066 0.934 7 N -0.700 5.700 8 C 0.601 3.399 9 O -0.571 6.571 10 C -0.125 4.125 11 C 0.109 3.891 12 N -0.351 5.351 13 C 0.074 3.926 14 N -0.091 5.091 15 N -0.225 5.225 16 C -0.131 4.131 17 C 0.184 3.816 18 N -0.604 5.604 19 C -0.250 4.250 20 H 0.079 0.921 21 C -0.056 4.056 22 N -0.940 5.940 23 Si 0.964 3.036 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.057 0.943 40 H -0.008 1.008 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.782 -3.397 -22.392 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.055 3.945 3 H 0.033 0.967 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.349 5.349 8 C 0.386 3.614 9 O -0.450 6.450 10 C -0.265 4.265 11 C -0.049 4.049 12 N -0.135 5.135 13 C -0.064 4.064 14 N -0.072 5.072 15 N -0.099 5.099 16 C -0.172 4.172 17 C 0.057 3.943 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.097 0.903 21 C -0.251 4.251 22 N -0.587 5.587 23 Si 0.792 3.208 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.010 0.990 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.510 -3.831 -22.685 24.895 hybrid contribution 0.255 0.025 1.545 1.566 sum 9.765 -3.806 -21.140 23.595 Atomic orbital electron populations 1.21711 0.93941 1.01639 1.01167 1.20626 0.94664 0.92993 0.86241 0.96650 1.22206 0.92530 1.02172 0.99038 1.20757 0.95041 0.95466 0.82926 0.91600 1.45912 1.13066 1.48011 1.27960 1.17069 0.81967 0.80084 0.82251 1.90798 1.57339 1.39201 1.57678 1.21432 0.94911 1.07846 1.02279 1.23841 0.99117 0.94526 0.87422 1.50728 1.13115 1.30036 1.19660 1.22742 0.83286 1.06877 0.93521 1.81894 0.88248 1.19451 1.17607 1.74590 1.26069 1.08228 1.00996 1.22333 0.99263 0.99440 0.96123 1.20464 0.83573 0.95627 0.94625 1.44424 1.02724 1.65615 1.19989 1.19521 0.95313 1.36420 0.86717 0.90347 1.25848 0.99103 1.01214 0.98940 1.70177 1.25226 1.46553 1.16747 0.85390 0.78345 0.79021 0.77997 1.20517 1.22553 1.19973 0.92779 0.94004 0.90469 0.89363 0.91004 0.75056 0.74684 0.87450 0.87115 0.85201 0.92476 0.93274 0.92489 0.98990 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.94 71.98 0.57 -3.94 16 2 C 0.16 6.54 3.50 44.98 0.16 6.70 16 3 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 4 C -0.12 -3.95 4.84 30.67 0.15 -3.80 16 5 C 0.16 5.79 2.42 45.02 0.11 5.90 16 6 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 7 N -0.70 -21.31 5.07 -445.59 -2.26 -23.57 16 8 C 0.60 18.78 7.78 86.69 0.67 19.45 16 9 O -0.57 -21.15 16.52 -4.01 -0.07 -21.22 16 10 C -0.12 -3.17 6.99 40.82 0.29 -2.88 16 11 C 0.11 1.87 11.31 83.85 0.95 2.82 16 12 N -0.35 -5.11 4.03 -368.58 -1.49 -6.59 16 13 C 0.07 0.18 11.51 127.77 1.47 1.65 16 14 N -0.09 -2.09 13.78 37.02 0.51 -1.58 16 15 N -0.23 -5.97 12.04 -50.00 -0.60 -6.57 16 16 C -0.13 -5.45 5.65 30.67 0.17 -5.28 16 17 C 0.18 9.36 5.29 86.36 0.46 9.81 16 18 N -0.60 -30.35 2.99 -675.22 -2.02 -32.37 16 19 C -0.25 -13.52 8.61 84.03 0.72 -12.79 16 20 H 0.08 4.04 6.20 -2.91 -0.02 4.02 16 21 C -0.06 -3.19 4.96 84.86 0.42 -2.76 16 22 N -0.94 -57.00 11.14 21.65 0.24 -56.76 16 23 Si 0.96 45.45 29.58 68.60 2.03 47.47 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H 0.05 1.91 7.40 -2.39 -0.02 1.90 16 28 H 0.04 1.64 7.66 -2.39 -0.02 1.62 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 11.06 8.29 -92.71 -0.77 10.29 16 33 H 0.24 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -75.63 338.25 2.76 -72.87 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.28 Total: 13.44 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 6.14 Total: 14.87 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.62 Total: -127.44 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -75.63 2.76 -72.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.886 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds