Wall clock time and date at job start Tue Mar 31 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58416 * 2 1 4 4 C 1.53194 * 109.58454 * 120.42909 * 2 1 3 5 5 C 1.53043 * 109.31000 * 174.42629 * 4 2 1 6 6 H 1.09000 * 109.46416 * 58.65193 * 5 4 2 7 7 N 1.46502 * 109.45919 * 178.62468 * 5 4 2 8 8 C 1.34774 * 119.99993 * 204.99739 * 7 5 4 9 9 O 1.21593 * 120.00329 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00117 * 180.02562 * 8 7 5 11 11 C 1.36597 * 125.77534 * 179.71534 * 10 8 7 12 12 N 1.34809 * 106.83967 * 179.89719 * 11 10 8 13 13 C 1.46502 * 126.59083 * 180.13452 * 12 11 10 14 14 N 1.40209 * 106.81460 * 0.35970 * 12 11 10 15 15 N 1.28767 * 108.36592 * 359.76767 * 14 12 11 16 16 C 1.53038 * 109.53784 * 298.63159 * 5 4 2 17 17 C 1.52765 * 109.38424 * 61.24001 * 16 5 4 18 18 N 1.46924 * 109.58908 * 239.71713 * 2 1 3 19 19 C 1.36940 * 120.62954 * 6.57746 * 18 2 1 20 20 H 1.07998 * 119.99935 * 330.98160 * 19 18 2 21 21 C 1.38807 * 119.99862 * 150.97806 * 19 18 2 22 22 N 1.31628 * 120.00356 * 336.07655 * 21 19 18 23 23 Si 1.86800 * 120.00149 * 156.07948 * 21 19 18 24 24 H 1.48504 * 109.47268 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.46887 * 299.99602 * 23 21 19 26 26 H 1.48493 * 109.47418 * 59.99607 * 23 21 19 27 27 H 1.09007 * 109.47126 * 180.28080 * 1 2 3 28 28 H 1.08998 * 109.47477 * 300.28209 * 1 2 3 29 29 H 1.08996 * 109.47286 * 60.28460 * 1 2 3 30 30 H 1.09005 * 109.49477 * 294.37343 * 4 2 1 31 31 H 1.08995 * 109.49927 * 54.46902 * 4 2 1 32 32 H 0.97001 * 119.99881 * 25.00063 * 7 5 4 33 33 H 1.07999 * 126.57111 * 0.04415 * 11 10 8 34 34 H 1.09011 * 109.46655 * 270.29334 * 13 12 11 35 35 H 1.08994 * 109.47389 * 30.29262 * 13 12 11 36 36 H 1.08994 * 109.47439 * 150.29683 * 13 12 11 37 37 H 1.08999 * 109.49855 * 181.31880 * 16 5 4 38 38 H 1.09002 * 109.49456 * 301.41850 * 16 5 4 39 39 H 1.08997 * 109.50761 * 185.70928 * 17 16 5 40 40 H 1.08995 * 109.43030 * 65.42464 * 17 16 5 41 41 H 0.97004 * 119.99318 * 354.30837 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1691 6 1 4.0061 0.1460 1.0995 7 7 4.0652 -1.5190 2.3734 8 6 5.3294 -1.3060 2.7891 9 8 6.0571 -0.5585 2.1645 10 6 5.8307 -1.9806 4.0015 11 6 7.0867 -1.8552 4.5236 12 7 7.1307 -2.6302 5.6258 13 6 8.2768 -2.8126 6.5199 14 7 5.8704 -3.2322 5.7488 15 7 5.1306 -2.8272 4.7759 16 6 3.9570 -1.6656 -0.0655 17 6 3.4645 -0.9502 -1.3223 18 7 2.0226 -0.6980 -1.1953 19 6 1.1537 -1.1108 -2.1699 20 1 0.1361 -1.3660 -1.9133 21 6 1.5808 -1.2012 -3.4876 22 7 2.6038 -0.4821 -3.8987 23 14 0.7037 -2.3432 -4.6775 24 1 1.3486 -2.2573 -6.0124 25 1 0.7873 -3.7388 -4.1768 26 1 -0.7217 -1.9420 -4.7891 27 1 -0.3634 -1.0277 0.0050 28 1 -0.3634 0.5182 0.8874 29 1 -0.3634 0.5094 -0.8925 30 1 1.7659 -0.1695 2.1366 31 1 1.6029 -1.7269 1.2892 32 1 3.4848 -2.1156 2.8715 33 1 7.8896 -1.2493 4.1302 34 1 8.8827 -3.6478 6.1682 35 1 8.8795 -1.9045 6.5280 36 1 7.9209 -3.0214 7.5288 37 1 5.0413 -1.7694 -0.1058 38 1 3.4983 -2.6527 -0.0085 39 1 3.6504 -1.5770 -2.1944 40 1 3.9928 -0.0031 -1.4310 41 1 3.0069 0.1711 -3.3056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947262015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:14 Heat of formation + Delta-G solvation = 78.721767 kcal Electronic energy + Delta-G solvation = -23582.472546 eV Core-core repulsion = 20114.171147 eV Total energy + Delta-G solvation = -3468.301399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40684 -39.53449 -37.71422 -35.01036 -34.62715 -32.56125 -31.64376 -30.95522 -29.31624 -28.10356 -26.38638 -24.89445 -23.60766 -22.48730 -21.88524 -21.10368 -20.10569 -19.33638 -18.15991 -16.92647 -16.51887 -16.26043 -15.91267 -14.86787 -14.83426 -14.74748 -14.25488 -13.92851 -13.63351 -13.52336 -13.48925 -13.30354 -13.07481 -12.60675 -12.37992 -11.64734 -11.52539 -11.33617 -11.24202 -10.92024 -10.68547 -10.63604 -10.56599 -10.29859 -10.13577 -10.04848 -9.93293 -9.82571 -9.52353 -9.11607 -8.70588 -8.30938 -6.81518 -5.97947 -3.16964 0.88305 1.57990 1.74521 3.24619 3.33396 3.53158 3.56964 3.74561 4.02146 4.05043 4.51027 4.55902 4.63618 4.76494 4.80198 5.08460 5.18756 5.31038 5.47486 5.52400 5.58235 5.75826 5.92311 6.01977 6.11680 6.20201 6.29950 6.34569 6.38183 6.49771 6.55945 6.67923 6.82833 6.97339 7.05743 7.15397 7.26938 7.55494 7.80988 8.09964 8.31011 8.65240 9.18879 9.92371 10.37084 11.29557 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.003237 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.064560 B = 8646.665000 C = 8914.626429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 H 0.025 0.975 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.083 0.917 7 N -0.707 5.707 8 C 0.600 3.400 9 O -0.540 6.540 10 C -0.096 4.096 11 C 0.091 3.909 12 N -0.366 5.366 13 C 0.088 3.912 14 N -0.069 5.069 15 N -0.204 5.204 16 C -0.142 4.142 17 C 0.155 3.845 18 N -0.595 5.595 19 C -0.346 4.346 20 H 0.061 0.939 21 C -0.025 4.025 22 N -0.918 5.918 23 Si 1.063 2.937 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.293 1.293 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.206 0.794 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -3.061 20.270 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 H 0.043 0.957 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.101 0.899 7 N -0.356 5.356 8 C 0.383 3.617 9 O -0.416 6.416 10 C -0.236 4.236 11 C -0.066 4.066 12 N -0.152 5.152 13 C -0.053 4.053 14 N -0.049 5.049 15 N -0.078 5.078 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.319 5.319 19 C -0.475 4.475 20 H 0.078 0.922 21 C -0.227 4.227 22 N -0.558 5.558 23 Si 0.893 3.107 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.221 1.221 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.222 0.778 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.372 -4.075 19.090 21.654 hybrid contribution 0.552 0.866 1.491 1.811 sum 9.924 -3.209 20.582 23.074 Atomic orbital electron populations 1.21768 0.95530 1.01504 1.00240 1.20343 0.93340 0.93269 0.86404 0.95710 1.22384 0.93476 1.01932 0.99673 1.21067 0.94459 0.96613 0.83004 0.89868 1.46099 1.12673 1.47978 1.28807 1.16768 0.82418 0.80642 0.81826 1.90817 1.56640 1.37735 1.56414 1.21648 0.93155 1.06519 1.02280 1.23398 0.99789 0.95433 0.87949 1.50373 1.13135 1.31864 1.19783 1.22191 0.84624 1.04435 0.94055 1.81995 0.86629 1.18443 1.17859 1.74636 1.25027 1.07611 1.00531 1.22390 0.99910 0.99792 0.96166 1.20823 0.84312 0.96910 0.95113 1.44233 1.02541 1.65368 1.19797 1.19947 0.95909 1.43451 0.88218 0.92150 1.25829 1.00170 1.00984 0.95729 1.70771 1.25729 1.21280 1.38017 0.83551 0.74983 0.75928 0.76223 1.21202 1.22154 1.22063 0.92698 0.94316 0.91893 0.92426 0.91543 0.76149 0.77753 0.89199 0.88367 0.88097 0.92572 0.92207 0.90093 0.96328 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.94 37.16 0.30 -2.24 16 2 C 0.17 3.59 3.50 -67.60 -0.24 3.36 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.34 4.84 -26.61 -0.13 -2.47 16 5 C 0.15 2.71 2.42 -67.89 -0.16 2.54 16 6 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 7 N -0.71 -10.95 5.07 -54.81 -0.28 -11.23 16 8 C 0.60 9.46 7.78 -12.48 -0.10 9.36 16 9 O -0.54 -9.90 16.53 5.28 0.09 -9.82 16 10 C -0.10 -1.28 6.99 -83.55 -0.58 -1.86 16 11 C 0.09 0.88 11.31 -16.84 -0.19 0.69 16 12 N -0.37 -3.14 4.03 -67.85 -0.27 -3.42 16 13 C 0.09 0.26 11.51 59.85 0.69 0.95 16 14 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 15 N -0.20 -2.80 12.04 32.85 0.40 -2.40 16 16 C -0.14 -2.86 5.63 -26.83 -0.15 -3.01 16 17 C 0.15 3.70 4.66 -3.93 -0.02 3.68 16 18 N -0.59 -14.67 2.84 -165.04 -0.47 -15.13 16 19 C -0.35 -9.42 8.50 -15.06 -0.13 -9.55 16 20 H 0.06 1.63 6.27 -52.49 -0.33 1.30 16 21 C -0.03 -0.71 4.70 -17.43 -0.08 -0.79 16 22 N -0.92 -27.60 12.46 55.49 0.69 -26.91 16 23 Si 1.06 25.33 29.98 -169.99 -5.10 20.23 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 27 H 0.05 1.06 7.44 -51.92 -0.39 0.68 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.31 7.62 -51.93 -0.40 0.91 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.40 5.65 8.29 -40.82 -0.34 5.31 16 33 H 0.21 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 35 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 2.16 6.39 -51.93 -0.33 1.83 16 40 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 41 H 0.27 8.19 6.68 -40.82 -0.27 7.91 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -34.20 337.29 -5.70 -39.90 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.88 Total: 3.02 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.80 Total: 0.67 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.90 Total: -59.10 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.10 Total: 20.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.20 -5.70 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.624 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds