Wall clock time and date at job start Tue Mar 31 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58416 * 2 1 4 4 C 1.53194 * 109.58454 * 120.42909 * 2 1 3 5 5 C 1.53043 * 109.31000 * 174.42629 * 4 2 1 6 6 H 1.09000 * 109.46416 * 58.65193 * 5 4 2 7 7 N 1.46502 * 109.45919 * 178.62468 * 5 4 2 8 8 C 1.34774 * 119.99993 * 204.99739 * 7 5 4 9 9 O 1.21593 * 120.00329 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00117 * 180.02562 * 8 7 5 11 11 C 1.36597 * 125.77534 * 179.71534 * 10 8 7 12 12 N 1.34809 * 106.83967 * 179.89719 * 11 10 8 13 13 C 1.46502 * 126.59083 * 180.13452 * 12 11 10 14 14 N 1.40209 * 106.81460 * 0.35970 * 12 11 10 15 15 N 1.28767 * 108.36592 * 359.76767 * 14 12 11 16 16 C 1.53038 * 109.53784 * 298.63159 * 5 4 2 17 17 C 1.52765 * 109.38424 * 61.24001 * 16 5 4 18 18 N 1.46924 * 109.58908 * 239.71713 * 2 1 3 19 19 C 1.36940 * 120.62954 * 6.57746 * 18 2 1 20 20 H 1.07998 * 119.99935 * 330.98160 * 19 18 2 21 21 C 1.38807 * 119.99862 * 150.97806 * 19 18 2 22 22 N 1.31628 * 120.00356 * 336.07655 * 21 19 18 23 23 Si 1.86800 * 120.00149 * 156.07948 * 21 19 18 24 24 H 1.48504 * 109.47268 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.46887 * 299.99602 * 23 21 19 26 26 H 1.48493 * 109.47418 * 59.99607 * 23 21 19 27 27 H 1.09007 * 109.47126 * 180.28080 * 1 2 3 28 28 H 1.08998 * 109.47477 * 300.28209 * 1 2 3 29 29 H 1.08996 * 109.47286 * 60.28460 * 1 2 3 30 30 H 1.09005 * 109.49477 * 294.37343 * 4 2 1 31 31 H 1.08995 * 109.49927 * 54.46902 * 4 2 1 32 32 H 0.97001 * 119.99881 * 25.00063 * 7 5 4 33 33 H 1.07999 * 126.57111 * 0.04415 * 11 10 8 34 34 H 1.09011 * 109.46655 * 270.29334 * 13 12 11 35 35 H 1.08994 * 109.47389 * 30.29262 * 13 12 11 36 36 H 1.08994 * 109.47439 * 150.29683 * 13 12 11 37 37 H 1.08999 * 109.49855 * 181.31880 * 16 5 4 38 38 H 1.09002 * 109.49456 * 301.41850 * 16 5 4 39 39 H 1.08997 * 109.50761 * 185.70928 * 17 16 5 40 40 H 1.08995 * 109.43030 * 65.42464 * 17 16 5 41 41 H 0.97004 * 119.99318 * 354.30837 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1691 6 1 4.0061 0.1460 1.0995 7 7 4.0652 -1.5190 2.3734 8 6 5.3294 -1.3060 2.7891 9 8 6.0571 -0.5585 2.1645 10 6 5.8307 -1.9806 4.0015 11 6 7.0867 -1.8552 4.5236 12 7 7.1307 -2.6302 5.6258 13 6 8.2768 -2.8126 6.5199 14 7 5.8704 -3.2322 5.7488 15 7 5.1306 -2.8272 4.7759 16 6 3.9570 -1.6656 -0.0655 17 6 3.4645 -0.9502 -1.3223 18 7 2.0226 -0.6980 -1.1953 19 6 1.1537 -1.1108 -2.1699 20 1 0.1361 -1.3660 -1.9133 21 6 1.5808 -1.2012 -3.4876 22 7 2.6038 -0.4821 -3.8987 23 14 0.7037 -2.3432 -4.6775 24 1 1.3486 -2.2573 -6.0124 25 1 0.7873 -3.7388 -4.1768 26 1 -0.7217 -1.9420 -4.7891 27 1 -0.3634 -1.0277 0.0050 28 1 -0.3634 0.5182 0.8874 29 1 -0.3634 0.5094 -0.8925 30 1 1.7659 -0.1695 2.1366 31 1 1.6029 -1.7269 1.2892 32 1 3.4848 -2.1156 2.8715 33 1 7.8896 -1.2493 4.1302 34 1 8.8827 -3.6478 6.1682 35 1 8.8795 -1.9045 6.5280 36 1 7.9209 -3.0214 7.5288 37 1 5.0413 -1.7694 -0.1058 38 1 3.4983 -2.6527 -0.0085 39 1 3.6504 -1.5770 -2.1944 40 1 3.9928 -0.0031 -1.4310 41 1 3.0069 0.1711 -3.3056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947262015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:12 Heat of formation + Delta-G solvation = 53.508844 kcal Electronic energy + Delta-G solvation = -23583.565860 eV Core-core repulsion = 20114.171147 eV Total energy + Delta-G solvation = -3469.394714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.24208 -40.89530 -39.33290 -36.29634 -35.61792 -34.36527 -33.15283 -32.07472 -30.96342 -28.74372 -27.99850 -26.66326 -24.88671 -23.63521 -23.19992 -22.50013 -21.44096 -20.98030 -19.29934 -18.78491 -17.31021 -17.22559 -17.13399 -16.60879 -16.13070 -15.73441 -15.65160 -15.42290 -15.21754 -15.03238 -14.80561 -14.31913 -14.06240 -13.97628 -13.48352 -13.16640 -13.04357 -12.77816 -12.68189 -12.39580 -12.34382 -12.30185 -11.96154 -11.88085 -11.77106 -11.61739 -11.34885 -11.33684 -11.00207 -10.46590 -10.41663 -10.05362 -8.88337 -8.15878 -5.33480 0.12338 0.56488 1.15348 1.60333 1.68155 1.85962 2.05784 2.19761 2.69443 3.14433 3.26977 3.44676 3.52304 3.76373 3.87699 3.93911 3.95744 4.17957 4.26864 4.37113 4.45970 4.49317 4.60119 4.62602 4.67596 4.69900 4.78319 4.86767 4.97312 5.01316 5.05004 5.19038 5.23598 5.41432 5.42880 5.45680 5.53181 5.97194 6.39877 6.46080 6.86342 7.10508 7.11737 7.84844 8.30217 9.08661 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.003237 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.064560 B = 8646.665000 C = 8914.626429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.162 3.838 3 H 0.017 0.983 4 C -0.120 4.120 5 C 0.164 3.836 6 H 0.068 0.932 7 N -0.700 5.700 8 C 0.602 3.398 9 O -0.571 6.571 10 C -0.125 4.125 11 C 0.110 3.890 12 N -0.350 5.350 13 C 0.074 3.926 14 N -0.091 5.091 15 N -0.226 5.226 16 C -0.127 4.127 17 C 0.164 3.836 18 N -0.611 5.611 19 C -0.341 4.341 20 H 0.065 0.935 21 C -0.082 4.082 22 N -0.950 5.950 23 Si 1.112 2.888 24 H -0.297 1.297 25 H -0.281 1.281 26 H -0.274 1.274 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.000 1.000 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.947 -3.833 22.938 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.034 0.966 4 C -0.159 4.159 5 C 0.059 3.941 6 H 0.086 0.914 7 N -0.350 5.350 8 C 0.387 3.613 9 O -0.449 6.449 10 C -0.266 4.266 11 C -0.048 4.048 12 N -0.135 5.135 13 C -0.064 4.064 14 N -0.071 5.071 15 N -0.099 5.099 16 C -0.168 4.168 17 C 0.037 3.963 18 N -0.336 5.336 19 C -0.470 4.470 20 H 0.082 0.918 21 C -0.278 4.278 22 N -0.593 5.593 23 Si 0.937 3.063 24 H -0.223 1.223 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.253 0.747 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.612 -4.876 21.850 24.364 hybrid contribution 0.590 1.142 0.801 1.514 sum 10.202 -3.734 22.651 25.122 Atomic orbital electron populations 1.21684 0.93997 1.01512 1.00986 1.20618 0.94706 0.92883 0.86154 0.96571 1.22195 0.92628 1.02133 0.98973 1.20720 0.94928 0.95473 0.82965 0.91386 1.45880 1.13097 1.48038 1.27958 1.17064 0.81896 0.80046 0.82244 1.90798 1.57308 1.39176 1.57657 1.21416 0.94791 1.08082 1.02268 1.23840 0.99121 0.94535 0.87336 1.50732 1.13119 1.30033 1.19612 1.22748 0.83250 1.06885 0.93564 1.81900 0.88195 1.19297 1.17751 1.74598 1.26071 1.08164 1.01081 1.22166 0.99535 0.99465 0.95587 1.20579 0.84421 0.95663 0.95643 1.44480 1.02403 1.66124 1.20591 1.20229 0.96332 1.41776 0.88697 0.91755 1.27144 1.00621 1.02062 0.97961 1.70894 1.27690 1.22719 1.37968 0.82888 0.74839 0.74765 0.73790 1.22330 1.20785 1.19992 0.92992 0.90416 0.94279 0.89207 0.91103 0.75001 0.74650 0.87424 0.85178 0.87102 0.92773 0.92307 0.93589 0.98243 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 7.94 71.98 0.57 -3.97 16 2 C 0.16 6.62 3.50 44.98 0.16 6.78 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -3.94 4.84 30.67 0.15 -3.79 16 5 C 0.16 5.74 2.42 45.02 0.11 5.85 16 6 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 7 N -0.70 -20.97 5.07 -445.58 -2.26 -23.23 16 8 C 0.60 18.47 7.78 86.69 0.67 19.14 16 9 O -0.57 -20.70 16.53 -4.01 -0.07 -20.77 16 10 C -0.13 -3.14 6.99 40.82 0.29 -2.86 16 11 C 0.11 1.84 11.31 83.85 0.95 2.79 16 12 N -0.35 -5.00 4.03 -368.59 -1.49 -6.49 16 13 C 0.07 0.16 11.51 127.77 1.47 1.63 16 14 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 15 N -0.23 -5.91 12.04 -49.99 -0.60 -6.51 16 16 C -0.13 -5.19 5.63 30.53 0.17 -5.02 16 17 C 0.16 8.14 4.66 86.22 0.40 8.54 16 18 N -0.61 -30.65 2.84 -676.06 -1.92 -32.57 16 19 C -0.34 -18.75 8.50 84.03 0.71 -18.03 16 20 H 0.06 3.45 6.27 -2.91 -0.02 3.43 16 21 C -0.08 -4.73 4.70 84.86 0.40 -4.33 16 22 N -0.95 -59.35 12.46 21.65 0.27 -59.08 16 23 Si 1.11 51.71 29.98 68.60 2.06 53.77 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H 0.05 1.91 7.44 -2.38 -0.02 1.89 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.59 7.62 -2.39 -0.02 1.57 16 30 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.41 10.94 8.29 -92.71 -0.77 10.17 16 33 H 0.24 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.05 2.58 6.39 -2.39 -0.02 2.57 16 40 H 0.00 -0.02 7.85 -2.39 -0.02 -0.04 16 41 H 0.25 16.16 6.68 -92.71 -0.62 15.54 16 Total: -1.00 -77.25 337.29 2.98 -74.27 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.43 Total: 15.41 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.05 Total: 6.74 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.49 Total: -129.42 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.07 Total: -20.77 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.06 Total: 53.77 kcal Total: -77.25 2.98 -74.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.775 kcal (2) G-P(sol) polarization free energy of solvation -77.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds