Wall clock time and date at job start Tue Mar 31 2020 03:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58445 * 2 1 4 4 C 1.53191 * 109.70250 * 120.35127 * 2 1 3 5 5 C 1.53040 * 109.31176 * 65.22447 * 4 2 1 6 6 H 1.08995 * 109.45151 * 301.35080 * 5 4 2 7 7 N 1.46503 * 109.46079 * 181.38049 * 5 4 2 8 8 C 1.34773 * 119.99613 * 154.93038 * 7 5 4 9 9 O 1.21593 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.47523 * 119.99787 * 180.02562 * 8 7 5 11 11 C 1.36597 * 125.77372 * 180.02562 * 10 8 7 12 12 N 1.34814 * 106.83961 * 179.75339 * 11 10 8 13 13 C 1.46503 * 126.59253 * 180.19841 * 12 11 10 14 14 N 1.40204 * 106.81592 * 0.24197 * 12 11 10 15 15 N 1.28763 * 108.36177 * 359.97438 * 14 12 11 16 16 C 1.53040 * 109.53489 * 61.36606 * 5 4 2 17 17 C 1.53190 * 109.31457 * 298.62911 * 16 5 4 18 18 N 1.46924 * 109.58813 * 239.71733 * 2 1 3 19 19 C 1.36936 * 120.63182 * 113.66091 * 18 2 1 20 20 H 1.07992 * 120.00057 * 27.68997 * 19 18 2 21 21 C 1.38819 * 119.99620 * 207.69888 * 19 18 2 22 22 N 1.31617 * 120.00015 * 17.35028 * 21 19 18 23 23 Si 1.86799 * 119.99658 * 197.34919 * 21 19 18 24 24 H 1.48507 * 109.47058 * 60.00244 * 23 21 19 25 25 H 1.48501 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.47215 * 299.99801 * 23 21 19 27 27 H 1.09002 * 109.46756 * 180.28105 * 1 2 3 28 28 H 1.09002 * 109.47535 * 300.28524 * 1 2 3 29 29 H 1.08997 * 109.46771 * 60.28857 * 1 2 3 30 30 H 1.08997 * 109.50018 * 305.26971 * 4 2 1 31 31 H 1.09004 * 109.50027 * 185.17751 * 4 2 1 32 32 H 0.96996 * 120.00239 * 334.93777 * 7 5 4 33 33 H 1.07999 * 126.57590 * 0.02562 * 11 10 8 34 34 H 1.09008 * 109.46893 * 90.00486 * 13 12 11 35 35 H 1.08996 * 109.47595 * 210.00561 * 13 12 11 36 36 H 1.09000 * 109.47151 * 330.00966 * 13 12 11 37 37 H 1.08997 * 109.50022 * 58.58945 * 16 5 4 38 38 H 1.09012 * 109.49714 * 178.68338 * 16 5 4 39 39 H 1.08998 * 109.59178 * 174.42032 * 17 16 5 40 40 H 1.08997 * 109.59343 * 294.85332 * 17 16 5 41 41 H 0.96998 * 119.99872 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2446 5 6 1.6473 -2.2043 1.1692 6 1 0.5625 -2.2837 1.0995 7 7 2.1111 -2.8975 2.3736 8 6 1.4856 -4.0163 2.7900 9 8 0.5368 -4.4507 2.1659 10 6 1.9523 -4.7141 4.0032 11 6 1.4089 -5.8518 4.5288 12 7 2.1299 -6.1581 5.6261 13 6 1.9202 -7.3014 6.5177 14 7 3.1183 -5.1715 5.7504 15 7 2.9822 -4.3364 4.7797 16 6 2.2858 -2.8447 -0.0654 17 6 1.7720 -2.1400 -1.3248 18 7 2.0226 -0.6980 -1.1953 19 6 2.7020 -0.0176 -2.1703 20 1 3.2656 0.8683 -1.9177 21 6 2.6661 -0.4665 -3.4834 22 7 1.7347 -1.3153 -3.8635 23 14 3.9397 0.1340 -4.7108 24 1 5.2970 -0.2423 -4.2400 25 1 3.6847 -0.4900 -6.0340 26 1 3.8504 1.6111 -4.8342 27 1 -0.3633 -1.0277 0.0050 28 1 -0.3634 0.5182 0.8874 29 1 -0.3633 0.5093 -0.8926 30 1 1.6106 -0.2790 2.1366 31 1 3.1325 -0.6475 1.2893 32 1 2.8681 -2.5512 2.8714 33 1 0.5665 -6.4029 4.1377 34 1 2.5043 -8.1507 6.1631 35 1 2.2374 -7.0383 7.5268 36 1 0.8629 -7.5661 6.5266 37 1 3.3696 -2.7436 -0.0083 38 1 2.0202 -3.9012 -0.1057 39 1 2.2971 -2.5250 -2.1990 40 1 0.7018 -2.3167 -1.4316 41 1 1.7099 -1.6292 -4.7809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947262016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:17 Heat of formation + Delta-G solvation = 56.929454 kcal Electronic energy + Delta-G solvation = -23647.683199 eV Core-core repulsion = 20178.436814 eV Total energy + Delta-G solvation = -3469.246385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.20804 -40.84370 -39.20529 -36.05717 -35.56535 -34.26622 -32.59879 -32.03657 -31.13382 -28.86346 -28.32106 -26.24739 -24.92618 -23.64968 -23.23800 -22.88641 -21.45343 -20.18744 -19.22171 -18.44041 -17.40920 -17.22142 -17.07895 -16.58178 -15.85690 -15.67863 -15.61147 -15.47943 -15.16439 -14.65499 -14.35728 -14.13354 -14.02937 -13.95209 -13.83615 -13.14888 -13.10870 -12.90739 -12.60824 -12.53533 -12.29553 -12.26443 -12.03651 -12.00242 -11.76667 -11.47318 -11.32052 -11.27184 -10.95674 -10.52552 -10.40031 -9.95070 -8.65923 -7.83206 -5.27468 0.15544 0.60874 1.18438 1.48793 1.51481 1.57726 2.13814 2.25465 2.54159 3.19070 3.32167 3.49940 3.65747 3.83541 3.92939 3.98529 4.11084 4.31526 4.38910 4.47202 4.50181 4.54378 4.69444 4.73488 4.76361 4.79961 4.88068 4.93730 5.10726 5.15077 5.19403 5.36051 5.45652 5.47868 5.50502 5.59311 5.70932 5.79291 6.43605 6.47193 6.90421 7.17367 7.18704 7.90779 8.42865 9.23285 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.003244 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.537864 B = 8628.287179 C = 8803.632972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.073 0.927 7 N -0.701 5.701 8 C 0.601 3.399 9 O -0.571 6.571 10 C -0.125 4.125 11 C 0.109 3.891 12 N -0.351 5.351 13 C 0.074 3.926 14 N -0.092 5.092 15 N -0.226 5.226 16 C -0.133 4.133 17 C 0.186 3.814 18 N -0.600 5.600 19 C -0.259 4.259 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.275 1.275 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.053 0.947 40 H -0.004 1.004 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -11.050 22.325 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.087 0.913 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.091 0.909 7 N -0.350 5.350 8 C 0.386 3.614 9 O -0.450 6.450 10 C -0.265 4.265 11 C -0.049 4.049 12 N -0.136 5.136 13 C -0.064 4.064 14 N -0.072 5.072 15 N -0.099 5.099 16 C -0.174 4.174 17 C 0.059 3.941 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.200 1.200 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.357 -10.947 22.609 25.122 hybrid contribution -0.022 -0.153 -1.534 1.541 sum -0.379 -11.099 21.075 23.822 Atomic orbital electron populations 1.22178 0.97875 1.00523 1.00610 1.20685 0.92416 0.95386 0.86051 0.91294 1.22149 1.01743 0.92995 0.99052 1.20814 0.98686 0.91956 0.82744 0.90898 1.45931 1.34758 1.26252 1.28087 1.17057 0.81827 0.80242 0.82241 1.90797 1.29486 1.66985 1.57703 1.21446 1.01362 1.01486 1.02171 1.23840 0.97947 0.95732 0.87403 1.50726 1.21227 1.21672 1.19926 1.22739 1.06654 0.83401 0.93634 1.81894 1.10461 0.97000 1.17877 1.74591 1.14264 1.20006 1.01045 1.22355 1.00119 0.98581 0.96314 1.20424 0.95704 0.83517 0.94438 1.44371 1.64310 1.03632 1.19923 1.19492 1.21999 1.10018 0.87422 0.91227 1.25777 0.99509 1.00782 0.98593 1.70191 1.33598 1.37394 1.16885 0.85380 0.79400 0.78018 0.77877 1.20578 1.22375 1.20029 0.94368 0.90723 0.95124 0.89177 0.91244 0.75120 0.74682 0.87464 0.87135 0.85191 0.92624 0.93317 0.92810 0.98589 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 9.03 71.98 0.65 -5.17 16 2 C 0.16 6.47 3.28 44.97 0.15 6.62 16 3 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 4 C -0.12 -3.91 5.03 30.67 0.15 -3.75 16 5 C 0.16 5.70 2.21 45.02 0.10 5.80 16 6 H 0.07 2.83 5.94 -2.39 -0.01 2.82 16 7 N -0.70 -21.18 5.07 -445.59 -2.26 -23.44 16 8 C 0.60 18.63 7.78 86.69 0.67 19.31 16 9 O -0.57 -20.92 16.52 -4.01 -0.07 -20.98 16 10 C -0.12 -3.15 6.99 40.82 0.29 -2.87 16 11 C 0.11 1.86 11.31 83.85 0.95 2.81 16 12 N -0.35 -5.10 4.03 -368.58 -1.49 -6.58 16 13 C 0.07 0.18 11.51 127.77 1.47 1.65 16 14 N -0.09 -2.09 13.78 37.02 0.51 -1.58 16 15 N -0.23 -5.96 12.04 -49.99 -0.60 -6.56 16 16 C -0.13 -5.51 5.65 30.67 0.17 -5.34 16 17 C 0.19 9.35 4.90 86.36 0.42 9.78 16 18 N -0.60 -30.00 2.70 -675.22 -1.82 -31.82 16 19 C -0.26 -14.23 9.59 84.04 0.81 -13.43 16 20 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 21 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 22 N -0.93 -56.34 11.19 21.65 0.24 -56.10 16 23 Si 0.96 45.49 29.59 68.60 2.03 47.52 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.04 1.53 5.74 -2.39 -0.01 1.51 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.41 11.00 8.29 -92.71 -0.77 10.23 16 33 H 0.24 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.05 3.07 6.04 -2.39 -0.01 3.06 16 40 H 0.00 -0.22 7.50 -2.39 -0.02 -0.23 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -75.23 337.41 3.07 -72.15 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.28 Total: 14.48 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.25 Total: 12.92 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.42 Total: -126.09 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.98 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.23 3.07 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.082 kcal (2) G-P(sol) polarization free energy of solvation -75.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds