Wall clock time and date at job start Tue Mar 31 2020 03:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58176 * 2 1 4 4 C 1.53187 * 109.70631 * 239.64261 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.77963 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46499 * 109.45791 * 178.61385 * 5 4 2 8 8 C 1.34781 * 119.99985 * 204.99746 * 7 5 4 9 9 O 1.21592 * 119.99664 * 0.02562 * 8 7 5 10 10 C 1.47521 * 119.99997 * 179.97438 * 8 7 5 11 11 C 1.36593 * 125.76808 * 179.71595 * 10 8 7 12 12 N 1.34817 * 106.83893 * 179.89924 * 11 10 8 13 13 C 1.46499 * 126.59597 * 180.11206 * 12 11 10 14 14 N 1.40209 * 106.80997 * 0.35623 * 12 11 10 15 15 N 1.28760 * 108.36932 * 359.77229 * 14 12 11 16 16 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 17 17 C 1.52755 * 109.38132 * 61.24392 * 16 5 4 18 18 N 1.46923 * 109.00900 * 305.58408 * 17 16 5 19 19 C 1.36943 * 120.62930 * 233.58508 * 18 17 16 20 20 H 1.08004 * 119.99729 * 152.16663 * 19 18 17 21 21 C 1.38806 * 119.99865 * 332.16538 * 19 18 17 22 22 N 1.31614 * 120.00503 * 342.77410 * 21 19 18 23 23 Si 1.86807 * 119.99640 * 162.77186 * 21 19 18 24 24 H 1.48505 * 109.47082 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47280 * 300.00267 * 23 21 19 26 26 H 1.48498 * 109.46916 * 60.00563 * 23 21 19 27 27 H 1.09006 * 109.47413 * 299.71489 * 1 2 3 28 28 H 1.08996 * 109.47336 * 59.71776 * 1 2 3 29 29 H 1.09006 * 109.47238 * 179.72000 * 1 2 3 30 30 H 1.09004 * 109.49624 * 54.72651 * 4 2 1 31 31 H 1.08999 * 109.49918 * 174.82652 * 4 2 1 32 32 H 0.97006 * 120.00167 * 24.99764 * 7 5 4 33 33 H 1.07998 * 126.58383 * 0.03655 * 11 10 8 34 34 H 1.09007 * 109.46534 * 270.26962 * 13 12 11 35 35 H 1.09001 * 109.47273 * 30.26854 * 13 12 11 36 36 H 1.08995 * 109.47667 * 150.27322 * 13 12 11 37 37 H 1.09007 * 109.49256 * 181.31765 * 16 5 4 38 38 H 1.09002 * 109.49531 * 301.41463 * 16 5 4 39 39 H 1.09005 * 109.50719 * 185.70148 * 17 16 5 40 40 H 1.09006 * 109.43430 * 65.42411 * 17 16 5 41 41 H 0.97004 * 120.00231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5624 -2.2840 -1.0994 7 7 2.1111 -2.8976 -2.3734 8 6 1.4866 -4.0174 -2.7890 9 8 0.5380 -4.4518 -2.1647 10 6 1.9532 -4.7151 -4.0021 11 6 1.4138 -5.8563 -4.5241 12 7 2.1283 -6.1570 -5.6272 13 6 1.9158 -7.2978 -6.5214 14 7 3.1175 -5.1710 -5.7507 15 7 2.9846 -4.3387 -4.7773 16 6 2.2858 -2.8448 0.0657 17 6 1.7768 -2.1410 1.3223 18 7 2.0225 -0.6980 1.1954 19 6 2.7026 -0.0177 2.1700 20 1 3.2649 0.8692 1.9173 21 6 2.6694 -0.4679 3.4826 22 7 1.7412 -1.3200 3.8628 23 14 3.9422 0.1357 4.7095 24 1 3.6896 -0.4894 6.0327 25 1 5.3002 -0.2357 4.2372 26 1 3.8480 1.6124 4.8343 27 1 -0.3634 0.5094 0.8926 28 1 -0.3634 0.5182 -0.8874 29 1 -0.3634 -1.0277 -0.0050 30 1 1.6106 -0.2792 -2.1366 31 1 3.1326 -0.6476 -1.2891 32 1 2.8676 -2.5508 -2.8717 33 1 0.5745 -6.4102 -4.1303 34 1 2.5007 -8.1481 -6.1706 35 1 0.8584 -7.5621 -6.5281 36 1 2.2303 -7.0320 -7.5306 37 1 2.0201 -3.9012 0.1060 38 1 3.3696 -2.7436 0.0086 39 1 2.3050 -2.5263 2.1945 40 1 0.7073 -2.3214 1.4311 41 1 1.7182 -1.6349 4.7800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947262017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:20 Heat of formation + Delta-G solvation = 56.878736 kcal Electronic energy + Delta-G solvation = -23648.707829 eV Core-core repulsion = 20179.459245 eV Total energy + Delta-G solvation = -3469.248584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.20806 -40.84813 -39.21223 -36.05628 -35.56561 -34.26649 -32.62004 -32.04357 -31.13422 -28.86680 -28.32201 -26.24759 -24.92798 -23.64438 -23.23818 -22.89008 -21.45360 -20.18584 -19.22261 -18.44001 -17.40964 -17.22203 -17.07902 -16.58222 -15.85732 -15.67836 -15.61204 -15.48512 -15.16688 -14.65474 -14.36517 -14.13284 -14.03208 -13.95173 -13.83599 -13.14962 -13.10964 -12.90600 -12.60982 -12.53793 -12.29492 -12.26392 -12.03471 -12.00936 -11.76489 -11.47196 -11.32019 -11.27272 -10.95769 -10.52610 -10.40067 -9.94993 -8.65807 -7.83182 -5.27549 0.15510 0.60853 1.18425 1.48832 1.51383 1.57738 2.13819 2.25404 2.54104 3.19081 3.32252 3.49892 3.65587 3.83486 3.92882 3.98496 4.10697 4.31390 4.38908 4.47195 4.50169 4.54280 4.69447 4.73550 4.76730 4.80407 4.88159 4.93611 5.10569 5.15048 5.19502 5.36013 5.45652 5.47966 5.50389 5.59389 5.70843 5.79219 6.43582 6.47130 6.90388 7.17332 7.18774 7.90826 8.42822 9.23401 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.003245 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.466315 B = 8626.912052 C = 8802.500594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.073 0.927 7 N -0.701 5.701 8 C 0.601 3.399 9 O -0.571 6.571 10 C -0.125 4.125 11 C 0.109 3.891 12 N -0.351 5.351 13 C 0.074 3.926 14 N -0.092 5.092 15 N -0.226 5.226 16 C -0.133 4.133 17 C 0.186 3.814 18 N -0.600 5.600 19 C -0.259 4.259 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.297 1.297 25 H -0.279 1.279 26 H -0.275 1.275 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.053 0.947 40 H -0.005 1.005 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -11.037 -22.335 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.087 0.913 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.091 0.909 7 N -0.350 5.350 8 C 0.386 3.614 9 O -0.450 6.450 10 C -0.265 4.265 11 C -0.049 4.049 12 N -0.136 5.136 13 C -0.064 4.064 14 N -0.072 5.072 15 N -0.099 5.099 16 C -0.174 4.174 17 C 0.059 3.941 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.088 0.912 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.224 1.224 25 H -0.206 1.206 26 H -0.200 1.200 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.013 0.987 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.364 -10.932 -22.620 25.126 hybrid contribution -0.014 -0.157 1.535 1.543 sum -0.379 -11.089 -21.085 23.826 Atomic orbital electron populations 1.22177 0.97863 1.00520 1.00613 1.20683 0.92431 0.95390 0.86019 0.91283 1.22151 1.01744 0.92994 0.99064 1.20815 0.98683 0.91955 0.82743 0.90898 1.45934 1.34826 1.26190 1.28081 1.17059 0.81826 0.80254 0.82229 1.90797 1.29485 1.67012 1.57674 1.21444 1.01418 1.01357 1.02246 1.23839 0.98026 0.95712 0.87343 1.50727 1.21457 1.21772 1.19598 1.22739 1.06623 0.83504 0.93561 1.81893 1.10332 0.97209 1.17795 1.74593 1.14201 1.20046 1.01060 1.22283 1.00142 0.98609 0.96335 1.20328 0.95743 0.83534 0.94463 1.44352 1.64391 1.03536 1.19959 1.19491 1.22052 1.09936 0.87451 0.91228 1.25773 0.99529 1.00756 0.98587 1.70191 1.33747 1.37232 1.16895 0.85383 0.79404 0.78017 0.77880 1.22377 1.20561 1.20036 0.95116 0.90720 0.94378 0.89165 0.91241 0.75117 0.74685 0.87467 0.85198 0.87126 0.93281 0.92642 0.92838 0.98657 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 9.04 71.98 0.65 -5.16 16 2 C 0.16 6.48 3.28 44.97 0.15 6.62 16 3 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 4 C -0.12 -3.91 5.03 30.67 0.15 -3.76 16 5 C 0.16 5.70 2.21 45.02 0.10 5.80 16 6 H 0.07 2.83 5.94 -2.39 -0.01 2.82 16 7 N -0.70 -21.18 5.07 -445.57 -2.26 -23.44 16 8 C 0.60 18.63 7.78 86.69 0.67 19.30 16 9 O -0.57 -20.92 16.53 -4.01 -0.07 -20.98 16 10 C -0.12 -3.15 6.99 40.81 0.29 -2.87 16 11 C 0.11 1.86 11.31 83.85 0.95 2.81 16 12 N -0.35 -5.09 4.03 -368.59 -1.49 -6.58 16 13 C 0.07 0.18 11.51 127.77 1.47 1.65 16 14 N -0.09 -2.09 13.78 37.02 0.51 -1.58 16 15 N -0.23 -5.96 12.04 -50.00 -0.60 -6.56 16 16 C -0.13 -5.52 5.63 30.53 0.17 -5.34 16 17 C 0.19 9.36 4.87 86.22 0.42 9.78 16 18 N -0.60 -30.01 2.71 -676.06 -1.83 -31.84 16 19 C -0.26 -14.24 9.58 84.03 0.81 -13.43 16 20 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 21 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 22 N -0.93 -56.37 11.19 21.65 0.24 -56.12 16 23 Si 0.96 45.49 29.59 68.60 2.03 47.52 16 24 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 27 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.04 1.52 5.76 -2.38 -0.01 1.51 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.41 10.99 8.29 -92.70 -0.77 10.23 16 33 H 0.24 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 35 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 3.06 6.04 -2.38 -0.01 3.04 16 40 H 0.00 -0.25 7.52 -2.38 -0.02 -0.27 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -75.27 337.42 3.06 -72.20 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.28 Total: 14.45 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.25 Total: 12.94 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -5.43 Total: -126.12 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.98 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.27 3.06 -72.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947262017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.080 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds