Wall clock time and date at job start Tue Mar 31 2020 03:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.70090 * 2 1 4 4 C 1.53191 * 109.59021 * 239.64261 * 2 1 3 5 5 C 1.53033 * 109.31209 * 185.57847 * 4 2 1 6 6 H 1.09001 * 109.46471 * 301.33848 * 5 4 2 7 7 N 1.46510 * 109.46060 * 181.38452 * 5 4 2 8 8 C 1.34774 * 120.00149 * 154.99878 * 7 5 4 9 9 O 1.21620 * 120.00019 * 4.59803 * 8 7 5 10 10 C 1.47229 * 119.99807 * 184.60194 * 8 7 5 11 11 C 1.37007 * 127.19100 * 354.65954 * 10 8 7 12 12 N 1.33314 * 106.37531 * 179.97438 * 11 10 8 13 13 N 1.28512 * 109.44015 * 359.97438 * 12 11 10 14 14 N 1.28721 * 110.63835 * 359.75471 * 13 12 11 15 15 C 1.46493 * 126.04044 * 180.26682 * 14 13 12 16 16 C 1.53042 * 109.54190 * 61.36642 * 5 4 2 17 17 C 1.53193 * 109.30998 * 298.63078 * 16 5 4 18 18 N 1.46926 * 109.58678 * 120.35157 * 2 1 3 19 19 C 1.36938 * 120.62918 * 353.41983 * 18 2 1 20 20 H 1.07993 * 120.00466 * 31.79366 * 19 18 2 21 21 C 1.38815 * 119.99555 * 211.79655 * 19 18 2 22 22 N 1.31619 * 120.00490 * 10.96755 * 21 19 18 23 23 Si 1.86809 * 119.99596 * 190.96301 * 21 19 18 24 24 H 1.48499 * 109.46996 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46861 * 120.00343 * 23 21 19 26 26 H 1.48495 * 109.46874 * 239.99962 * 23 21 19 27 27 H 1.08998 * 109.46835 * 180.36135 * 1 2 3 28 28 H 1.08999 * 109.47084 * 300.35504 * 1 2 3 29 29 H 1.08999 * 109.47095 * 60.36125 * 1 2 3 30 30 H 1.08999 * 109.49439 * 65.62132 * 4 2 1 31 31 H 1.09007 * 109.49382 * 305.52879 * 4 2 1 32 32 H 0.97001 * 119.99587 * 335.00055 * 7 5 4 33 33 H 1.08002 * 126.81449 * 359.92040 * 11 10 8 34 34 H 1.08995 * 109.47058 * 273.35919 * 15 14 13 35 35 H 1.09000 * 109.46965 * 33.35371 * 15 14 13 36 36 H 1.08993 * 109.47420 * 153.35387 * 15 14 13 37 37 H 1.09001 * 109.49880 * 58.58254 * 16 5 4 38 38 H 1.09003 * 109.49899 * 178.68572 * 16 5 4 39 39 H 1.08999 * 109.58915 * 294.85170 * 17 16 5 40 40 H 1.08999 * 109.70132 * 174.49164 * 17 16 5 41 41 H 0.97005 * 119.99977 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1700 6 1 4.0062 0.1474 -1.0993 7 7 4.0653 -1.5158 -2.3752 8 6 5.3296 -1.3022 -2.7906 9 8 6.0831 -0.6222 -2.1206 10 6 5.7984 -1.8920 -4.0554 11 6 5.1153 -2.7571 -4.8692 12 7 5.9229 -3.0244 -5.8957 13 7 7.0272 -2.3837 -5.7492 14 7 7.0067 -1.6854 -4.6681 15 6 8.0856 -0.8245 -4.1775 16 6 3.9569 -1.6657 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0225 -0.6995 1.1945 19 6 1.1536 -1.1134 2.1686 20 1 0.1494 -1.4110 1.9055 21 6 1.5636 -1.1502 3.4943 22 7 2.7011 -0.5900 3.8473 23 14 0.5007 -1.9950 4.7774 24 1 -0.7180 -2.5418 4.1286 25 1 1.2668 -3.1022 5.4037 26 1 0.1087 -1.0128 5.8199 27 1 -0.3633 -1.0276 0.0065 28 1 -0.3633 0.5193 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 1.7660 -0.1669 -2.1368 31 1 1.6030 -1.7254 -1.2912 32 1 3.4850 -2.1117 -2.8742 33 1 4.1204 -3.1460 -4.7102 34 1 8.7823 -1.4172 -3.5848 35 1 8.6123 -0.3839 -5.0240 36 1 7.6652 -0.0319 -3.5587 37 1 3.4984 -2.6528 0.0055 38 1 5.0413 -1.7694 0.1039 39 1 3.9903 0.0022 1.4318 40 1 3.6521 -1.5695 2.1987 41 1 2.9877 -0.6162 4.7736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947265385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:23 Heat of formation + Delta-G solvation = 82.633822 kcal Electronic energy + Delta-G solvation = -23869.873894 eV Core-core repulsion = 20401.742134 eV Total energy + Delta-G solvation = -3468.131760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.49289 -39.78537 -37.73619 -35.19254 -34.47969 -32.62540 -32.03231 -30.96346 -29.47065 -28.25746 -26.46012 -25.14987 -23.97935 -22.74251 -21.91222 -21.01929 -20.28272 -19.41797 -18.16608 -17.01217 -16.87096 -16.33212 -15.93920 -15.19960 -14.78896 -14.63091 -14.20680 -13.97152 -13.73211 -13.57202 -13.34050 -13.21413 -12.88558 -12.78386 -12.28074 -11.65580 -11.37501 -11.28866 -11.16418 -10.98599 -10.96401 -10.71434 -10.45392 -10.37081 -10.28178 -10.16062 -10.06630 -9.83171 -9.71972 -9.48766 -8.88651 -8.48626 -6.65261 -5.81127 -3.29169 0.74675 1.88794 2.09221 2.97846 3.04534 3.34365 3.42297 3.43623 4.10048 4.31243 4.44962 4.52483 4.77282 4.80596 5.14631 5.16928 5.29863 5.36443 5.40553 5.48178 5.66755 5.70277 5.89026 6.08742 6.10472 6.12925 6.26206 6.29380 6.36026 6.42820 6.55663 6.72179 6.74438 6.97564 7.04923 7.31510 7.40338 7.66366 7.78964 7.99166 8.12636 8.44790 9.19070 9.81050 10.38706 11.27287 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.003450 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.094289 B = 8114.386944 C = 8454.931500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.153 3.847 6 H 0.084 0.916 7 N -0.703 5.703 8 C 0.590 3.410 9 O -0.534 6.534 10 C -0.064 4.064 11 C -0.002 4.002 12 N -0.275 5.275 13 N -0.065 5.065 14 N -0.256 5.256 15 C 0.076 3.924 16 C -0.148 4.148 17 C 0.175 3.825 18 N -0.588 5.588 19 C -0.252 4.252 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.091 0.909 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -1.010 -14.923 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.051 3.949 6 H 0.102 0.898 7 N -0.353 5.353 8 C 0.373 3.627 9 O -0.410 6.410 10 C -0.199 4.199 11 C -0.163 4.163 12 N -0.137 5.137 13 N -0.046 5.046 14 N -0.052 5.052 15 C -0.065 4.065 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.215 0.785 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.039 0.961 40 H 0.109 0.891 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.078 -0.849 -15.481 16.653 hybrid contribution -1.167 -0.420 1.440 1.900 sum 4.911 -1.268 -14.041 14.929 Atomic orbital electron populations 1.21784 0.95639 1.01496 1.00344 1.20363 0.93168 0.93547 0.86531 0.95500 1.22418 0.93215 1.01948 0.99953 1.21183 0.94532 0.96651 0.82561 0.89771 1.46076 1.11892 1.48075 1.29271 1.16708 0.82949 0.80500 0.82498 1.90817 1.54289 1.39954 1.55975 1.22152 0.89602 1.07538 1.00593 1.23894 1.01803 0.98872 0.91704 1.74880 0.98094 1.18783 1.21980 1.78263 1.17822 1.05522 1.02995 1.47646 1.12647 1.30029 1.14889 1.22575 0.87778 0.94401 1.01725 1.22605 0.99911 0.99670 0.96653 1.20760 0.83281 0.97313 0.93757 1.44156 1.02958 1.64833 1.19167 1.19193 0.95955 1.37285 0.85731 0.91270 1.25188 0.97568 0.99378 0.97262 1.69986 1.22349 1.45687 1.16718 0.86242 0.79918 0.78938 0.81779 1.20234 1.21632 1.21693 0.92727 0.91829 0.94286 0.92476 0.91545 0.76675 0.78497 0.88543 0.88082 0.86390 0.92480 0.92720 0.96137 0.89098 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.97 37.16 0.30 -2.05 16 2 C 0.17 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 4 C -0.14 -2.05 4.84 -26.62 -0.13 -2.17 16 5 C 0.15 2.40 2.38 -67.89 -0.16 2.23 16 6 H 0.08 1.47 7.65 -51.93 -0.40 1.07 16 7 N -0.70 -8.70 5.07 -54.90 -0.28 -8.98 16 8 C 0.59 7.94 7.75 -12.61 -0.10 7.84 16 9 O -0.53 -8.69 14.53 5.26 0.08 -8.61 16 10 C -0.06 -0.77 6.98 -82.33 -0.57 -1.34 16 11 C 0.00 -0.02 11.54 -17.35 -0.20 -0.22 16 12 N -0.27 -3.61 12.35 30.47 0.38 -3.23 16 13 N -0.07 -0.85 13.14 60.35 0.79 -0.06 16 14 N -0.26 -2.99 3.79 -64.13 -0.24 -3.24 16 15 C 0.08 0.63 10.96 59.84 0.66 1.28 16 16 C -0.15 -2.73 5.65 -26.61 -0.15 -2.88 16 17 C 0.18 4.02 5.26 -3.71 -0.02 4.00 16 18 N -0.59 -13.70 2.98 -164.77 -0.49 -14.19 16 19 C -0.25 -6.46 8.54 -15.06 -0.13 -6.59 16 20 H 0.07 1.73 6.27 -52.49 -0.33 1.40 16 21 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 22 N -0.90 -25.46 11.10 55.49 0.62 -24.85 16 23 Si 0.90 21.01 29.57 -169.99 -5.03 15.99 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.05 0.95 7.39 -51.93 -0.38 0.57 16 28 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 3.72 7.63 -40.82 -0.31 3.41 16 33 H 0.20 1.35 7.56 -52.49 -0.40 0.96 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.12 1.08 6.41 -51.93 -0.33 0.74 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 2.37 6.14 -51.93 -0.32 2.05 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -31.46 332.54 -5.81 -37.27 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.81 Total: 1.70 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.83 Total: 3.18 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.77 Total: -54.54 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.46 -5.81 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.906 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds