Wall clock time and date at job start Tue Mar 31 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.70090 * 2 1 4 4 C 1.53191 * 109.59021 * 239.64261 * 2 1 3 5 5 C 1.53033 * 109.31209 * 185.57847 * 4 2 1 6 6 H 1.09001 * 109.46471 * 301.33848 * 5 4 2 7 7 N 1.46510 * 109.46060 * 181.38452 * 5 4 2 8 8 C 1.34774 * 120.00149 * 154.99878 * 7 5 4 9 9 O 1.21620 * 120.00019 * 4.59803 * 8 7 5 10 10 C 1.47229 * 119.99807 * 184.60194 * 8 7 5 11 11 C 1.37007 * 127.19100 * 354.65954 * 10 8 7 12 12 N 1.33314 * 106.37531 * 179.97438 * 11 10 8 13 13 N 1.28512 * 109.44015 * 359.97438 * 12 11 10 14 14 N 1.28721 * 110.63835 * 359.75471 * 13 12 11 15 15 C 1.46493 * 126.04044 * 180.26682 * 14 13 12 16 16 C 1.53042 * 109.54190 * 61.36642 * 5 4 2 17 17 C 1.53193 * 109.30998 * 298.63078 * 16 5 4 18 18 N 1.46926 * 109.58678 * 120.35157 * 2 1 3 19 19 C 1.36938 * 120.62918 * 353.41983 * 18 2 1 20 20 H 1.07993 * 120.00466 * 31.79366 * 19 18 2 21 21 C 1.38815 * 119.99555 * 211.79655 * 19 18 2 22 22 N 1.31619 * 120.00490 * 10.96755 * 21 19 18 23 23 Si 1.86809 * 119.99596 * 190.96301 * 21 19 18 24 24 H 1.48499 * 109.46996 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46861 * 120.00343 * 23 21 19 26 26 H 1.48495 * 109.46874 * 239.99962 * 23 21 19 27 27 H 1.08998 * 109.46835 * 180.36135 * 1 2 3 28 28 H 1.08999 * 109.47084 * 300.35504 * 1 2 3 29 29 H 1.08999 * 109.47095 * 60.36125 * 1 2 3 30 30 H 1.08999 * 109.49439 * 65.62132 * 4 2 1 31 31 H 1.09007 * 109.49382 * 305.52879 * 4 2 1 32 32 H 0.97001 * 119.99587 * 335.00055 * 7 5 4 33 33 H 1.08002 * 126.81449 * 359.92040 * 11 10 8 34 34 H 1.08995 * 109.47058 * 273.35919 * 15 14 13 35 35 H 1.09000 * 109.46965 * 33.35371 * 15 14 13 36 36 H 1.08993 * 109.47420 * 153.35387 * 15 14 13 37 37 H 1.09001 * 109.49880 * 58.58254 * 16 5 4 38 38 H 1.09003 * 109.49899 * 178.68572 * 16 5 4 39 39 H 1.08999 * 109.58915 * 294.85170 * 17 16 5 40 40 H 1.08999 * 109.70132 * 174.49164 * 17 16 5 41 41 H 0.97005 * 119.99977 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1700 6 1 4.0062 0.1474 -1.0993 7 7 4.0653 -1.5158 -2.3752 8 6 5.3296 -1.3022 -2.7906 9 8 6.0831 -0.6222 -2.1206 10 6 5.7984 -1.8920 -4.0554 11 6 5.1153 -2.7571 -4.8692 12 7 5.9229 -3.0244 -5.8957 13 7 7.0272 -2.3837 -5.7492 14 7 7.0067 -1.6854 -4.6681 15 6 8.0856 -0.8245 -4.1775 16 6 3.9569 -1.6657 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0225 -0.6995 1.1945 19 6 1.1536 -1.1134 2.1686 20 1 0.1494 -1.4110 1.9055 21 6 1.5636 -1.1502 3.4943 22 7 2.7011 -0.5900 3.8473 23 14 0.5007 -1.9950 4.7774 24 1 -0.7180 -2.5418 4.1286 25 1 1.2668 -3.1022 5.4037 26 1 0.1087 -1.0128 5.8199 27 1 -0.3633 -1.0276 0.0065 28 1 -0.3633 0.5193 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 1.7660 -0.1669 -2.1368 31 1 1.6030 -1.7254 -1.2912 32 1 3.4850 -2.1117 -2.8742 33 1 4.1204 -3.1460 -4.7102 34 1 8.7823 -1.4172 -3.5848 35 1 8.6123 -0.3839 -5.0240 36 1 7.6652 -0.0319 -3.5587 37 1 3.4984 -2.6528 0.0055 38 1 5.0413 -1.7694 0.1039 39 1 3.9903 0.0022 1.4318 40 1 3.6521 -1.5695 2.1987 41 1 2.9877 -0.6162 4.7736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947265385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:22 Heat of formation + Delta-G solvation = 60.113214 kcal Electronic energy + Delta-G solvation = -23870.850461 eV Core-core repulsion = 20401.742134 eV Total energy + Delta-G solvation = -3469.108327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.38741 -40.97243 -39.21460 -36.37235 -35.54138 -34.26786 -33.33985 -32.33938 -31.00171 -29.04093 -27.95276 -26.77235 -25.17289 -23.88057 -23.31328 -22.24273 -21.54395 -20.92366 -19.20922 -18.23494 -17.88132 -17.73432 -17.23039 -16.82030 -15.94298 -15.77601 -15.62160 -15.38906 -15.19850 -14.83314 -14.50519 -14.31095 -14.26788 -13.89660 -13.30021 -13.21769 -12.92617 -12.73372 -12.66177 -12.57614 -12.33090 -12.24796 -12.04593 -11.83063 -11.67473 -11.49926 -11.44610 -11.28019 -11.04633 -10.65742 -10.53862 -10.07735 -8.57398 -7.81178 -5.30982 -0.17325 1.05302 1.19000 1.48123 1.50664 1.59767 1.96831 2.02423 2.54248 3.26808 3.36478 3.40997 3.64581 3.71221 3.88602 4.01932 4.08574 4.19950 4.29595 4.43221 4.51617 4.61087 4.65879 4.75016 4.79903 4.84148 4.93078 4.99983 5.10638 5.11882 5.20694 5.28831 5.42200 5.46115 5.56927 5.60771 5.76001 5.77771 6.37211 6.48017 6.99925 7.21410 7.21727 7.92223 8.44814 9.25703 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.003450 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.094289 B = 8114.386944 C = 8454.931500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.013 0.987 4 C -0.120 4.120 5 C 0.167 3.833 6 H 0.065 0.935 7 N -0.688 5.688 8 C 0.595 3.405 9 O -0.566 6.566 10 C -0.078 4.078 11 C 0.015 3.985 12 N -0.300 5.300 13 N -0.079 5.079 14 N -0.254 5.254 15 C 0.069 3.931 16 C -0.132 4.132 17 C 0.183 3.817 18 N -0.604 5.604 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.054 4.054 22 N -0.941 5.941 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.296 1.296 26 H -0.297 1.297 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.419 0.581 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.047 0.953 39 H -0.011 1.011 40 H 0.054 0.946 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -1.961 -17.387 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.053 3.947 3 H 0.031 0.969 4 C -0.159 4.159 5 C 0.063 3.937 6 H 0.083 0.917 7 N -0.339 5.339 8 C 0.380 3.620 9 O -0.445 6.445 10 C -0.213 4.213 11 C -0.146 4.146 12 N -0.162 5.162 13 N -0.060 5.060 14 N -0.051 5.051 15 C -0.070 4.070 16 C -0.172 4.172 17 C 0.056 3.944 18 N -0.328 5.328 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.249 4.249 22 N -0.588 5.588 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.223 1.223 26 H -0.225 1.225 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.257 0.743 33 H 0.253 0.747 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.614 -1.822 -18.014 18.685 hybrid contribution -0.684 -0.062 2.159 2.266 sum 3.930 -1.885 -15.855 16.443 Atomic orbital electron populations 1.21710 0.93983 1.01694 1.01088 1.20652 0.94641 0.92985 0.86426 0.96923 1.22222 0.92078 1.02636 0.98991 1.20771 0.95170 0.95290 0.82517 0.91708 1.45684 1.11941 1.48076 1.28173 1.16827 0.82738 0.79821 0.82637 1.90817 1.55226 1.41398 1.57054 1.21994 0.90311 1.08629 1.00383 1.24529 1.02694 0.97268 0.90093 1.74875 0.98610 1.19593 1.23124 1.78237 1.18183 1.06044 1.03493 1.47941 1.13096 1.29644 1.14421 1.22805 0.87358 0.94052 1.02823 1.22333 0.99287 0.99672 0.95944 1.20453 0.83639 0.95507 0.94754 1.44417 1.02622 1.65587 1.20174 1.19561 0.96362 1.35502 0.86179 0.90338 1.25914 0.98823 1.00859 0.99325 1.70163 1.24256 1.47953 1.16413 0.85285 0.78870 0.77474 0.79340 1.18513 1.22297 1.22466 0.92634 0.94346 0.90396 0.88799 0.90222 0.74316 0.74729 0.87471 0.85567 0.87313 0.91845 0.93380 0.99319 0.92803 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.97 71.98 0.57 -3.51 16 2 C 0.16 5.82 3.50 44.97 0.16 5.98 16 3 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 4 C -0.12 -3.20 4.84 30.67 0.15 -3.05 16 5 C 0.17 4.89 2.38 45.01 0.11 5.00 16 6 H 0.06 2.22 7.65 -2.39 -0.02 2.20 16 7 N -0.69 -14.93 5.07 -445.86 -2.26 -17.19 16 8 C 0.60 14.85 7.75 86.61 0.67 15.52 16 9 O -0.57 -18.07 14.53 -4.09 -0.06 -18.13 16 10 C -0.08 -1.70 6.98 40.40 0.28 -1.42 16 11 C 0.02 0.28 11.54 84.18 0.97 1.25 16 12 N -0.30 -7.20 12.35 -57.50 -0.71 -7.91 16 13 N -0.08 -1.92 13.14 37.02 0.49 -1.43 16 14 N -0.25 -5.50 3.79 -356.80 -1.35 -6.86 16 15 C 0.07 1.06 10.96 127.77 1.40 2.46 16 16 C -0.13 -4.82 5.65 30.67 0.17 -4.65 16 17 C 0.18 8.70 5.26 86.36 0.45 9.16 16 18 N -0.60 -28.28 2.98 -675.22 -2.01 -30.29 16 19 C -0.25 -12.62 8.54 84.03 0.72 -11.90 16 20 H 0.08 3.83 6.27 -2.91 -0.02 3.82 16 21 C -0.05 -2.96 5.04 84.86 0.43 -2.54 16 22 N -0.94 -55.32 11.10 21.65 0.24 -55.08 16 23 Si 0.96 43.84 29.57 68.60 2.03 45.87 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 27 H 0.05 1.76 7.39 -2.39 -0.02 1.75 16 28 H 0.04 1.40 7.68 -2.39 -0.02 1.38 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.42 5.89 7.63 -92.71 -0.71 5.19 16 33 H 0.24 2.09 7.56 -2.91 -0.02 2.07 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.92 6.41 -2.39 -0.02 1.91 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.05 2.95 6.14 -2.39 -0.01 2.93 16 41 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -71.05 332.54 2.79 -68.26 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.34 Total: 10.45 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.08 Total: 12.30 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -5.61 Total: -118.75 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.06 Total: -18.13 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.05 2.79 -68.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.374 kcal (2) G-P(sol) polarization free energy of solvation -71.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds