Wall clock time and date at job start Tue Mar 31 2020 03:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58733 * 2 1 4 4 C 1.53201 * 109.58280 * 120.44276 * 2 1 3 5 5 C 1.53044 * 109.31129 * 174.43824 * 4 2 1 6 6 H 1.08998 * 109.46418 * 58.62338 * 5 4 2 7 7 N 1.46490 * 109.46031 * 178.60085 * 5 4 2 8 8 C 1.34778 * 120.00289 * 205.02415 * 7 5 4 9 9 O 1.21626 * 119.99597 * 355.40590 * 8 7 5 10 10 C 1.47227 * 120.00462 * 175.40400 * 8 7 5 11 11 C 1.37007 * 127.18702 * 4.46108 * 10 8 7 12 12 N 1.33326 * 106.37110 * 180.02562 * 11 10 8 13 13 N 1.28514 * 109.44049 * 0.02562 * 12 11 10 14 14 N 1.28716 * 110.63650 * 359.71349 * 13 12 11 15 15 C 1.46500 * 126.03476 * 180.29531 * 14 13 12 16 16 C 1.53048 * 109.52224 * 298.61389 * 5 4 2 17 17 C 1.53184 * 109.31617 * 61.37496 * 16 5 4 18 18 N 1.46927 * 108.77437 * 305.36218 * 17 16 5 19 19 C 1.36938 * 120.63338 * 233.58575 * 18 17 16 20 20 H 1.08000 * 120.00000 * 144.96337 * 19 18 17 21 21 C 1.38809 * 119.99786 * 324.96890 * 19 18 17 22 22 N 1.31622 * 120.00249 * 343.11664 * 21 19 18 23 23 Si 1.86804 * 119.99804 * 163.11930 * 21 19 18 24 24 H 1.48494 * 109.47188 * 59.99780 * 23 21 19 25 25 H 1.48503 * 109.47161 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47242 * 299.99675 * 23 21 19 27 27 H 1.08997 * 109.47378 * 180.28371 * 1 2 3 28 28 H 1.08999 * 109.46891 * 300.28211 * 1 2 3 29 29 H 1.08997 * 109.47092 * 60.28311 * 1 2 3 30 30 H 1.08992 * 109.50813 * 54.47702 * 4 2 1 31 31 H 1.08999 * 109.48154 * 294.37618 * 4 2 1 32 32 H 0.96999 * 120.00101 * 25.29960 * 7 5 4 33 33 H 1.07997 * 126.81923 * 0.02902 * 11 10 8 34 34 H 1.09001 * 109.47241 * 264.55294 * 15 14 13 35 35 H 1.08993 * 109.47160 * 24.55895 * 15 14 13 36 36 H 1.09005 * 109.46848 * 144.55824 * 15 14 13 37 37 H 1.09004 * 109.49314 * 181.32499 * 16 5 4 38 38 H 1.08996 * 109.49829 * 301.41426 * 16 5 4 39 39 H 1.08998 * 109.58733 * 65.14961 * 17 16 5 40 40 H 1.09002 * 109.58750 * 185.43253 * 17 16 5 41 41 H 0.96991 * 120.00066 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7313 1.2444 5 6 3.5674 -0.8495 1.1692 6 1 4.0059 0.1460 1.0995 7 7 4.0651 -1.5188 2.3735 8 6 5.3291 -1.3051 2.7897 9 8 6.0825 -0.6236 2.1210 10 6 5.7978 -1.8967 4.0538 11 6 5.1086 -2.7503 4.8744 12 7 5.9189 -3.0244 5.8971 13 7 7.0303 -2.3981 5.7421 14 7 7.0163 -1.7120 4.6532 15 6 8.1089 -0.8783 4.1457 16 6 3.9568 -1.6657 -0.0656 17 6 3.4651 -0.9453 -1.3249 18 7 2.0226 -0.6981 -1.1953 19 6 1.1537 -1.1099 -2.1704 20 1 0.1668 -1.4573 -1.9026 21 6 1.5416 -1.0810 -3.5029 22 7 2.5844 -0.3666 -3.8694 23 14 0.5833 -2.0561 -4.7759 24 1 -0.8251 -1.5863 -4.8019 25 1 1.1953 -1.8584 -6.1144 26 1 0.6177 -3.4982 -4.4235 27 1 -0.3634 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5094 -0.8925 30 1 1.6030 -1.7273 1.2889 31 1 1.7657 -0.1699 2.1365 32 1 3.4862 -2.1188 2.8692 33 1 4.1077 -3.1266 4.7229 34 1 7.9502 0.1554 4.4532 35 1 9.0562 -1.2359 4.5489 36 1 8.1330 -0.9339 3.0574 37 1 5.0412 -1.7695 -0.1058 38 1 3.4983 -2.6529 -0.0085 39 1 3.9904 0.0037 -1.4316 40 1 3.6542 -1.5679 -2.1993 41 1 2.8552 -0.3461 -4.8006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947265386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:26 Heat of formation + Delta-G solvation = 80.950973 kcal Electronic energy + Delta-G solvation = -23859.307045 eV Core-core repulsion = 20391.102311 eV Total energy + Delta-G solvation = -3468.204734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.49699 -39.78852 -37.73013 -35.18833 -34.48017 -32.60583 -32.01988 -31.00785 -29.50067 -28.26214 -26.45610 -25.12666 -23.97268 -22.75219 -21.95162 -21.01461 -20.29420 -19.42597 -18.17308 -17.01622 -16.86869 -16.31612 -15.94999 -15.16343 -14.72850 -14.69213 -14.22121 -13.99681 -13.75658 -13.57217 -13.33108 -13.22076 -12.90077 -12.78903 -12.28735 -11.64489 -11.39461 -11.28029 -11.21254 -11.01955 -10.92587 -10.71864 -10.45505 -10.41013 -10.28929 -10.18580 -10.09211 -9.84123 -9.72335 -9.49121 -8.88706 -8.48313 -6.61735 -5.82736 -3.31385 0.74100 1.88303 2.08702 2.97507 3.03992 3.35378 3.41955 3.42513 4.10118 4.30344 4.45393 4.51375 4.77018 4.80469 5.14476 5.16243 5.29472 5.34566 5.38547 5.47182 5.66459 5.69781 5.88554 6.08772 6.09754 6.12316 6.26492 6.30198 6.35940 6.43189 6.54413 6.69447 6.72730 7.00228 7.07206 7.24336 7.38291 7.54101 7.80761 7.98590 8.12180 8.45668 9.17584 9.79938 10.40776 11.25582 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029190 B = 0.003451 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.989568 B = 8112.136358 C = 8442.655055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.154 3.846 6 H 0.085 0.915 7 N -0.704 5.704 8 C 0.590 3.410 9 O -0.534 6.534 10 C -0.064 4.064 11 C -0.002 4.002 12 N -0.275 5.275 13 N -0.065 5.065 14 N -0.256 5.256 15 C 0.077 3.923 16 C -0.148 4.148 17 C 0.179 3.821 18 N -0.585 5.585 19 C -0.260 4.260 20 H 0.066 0.934 21 C 0.011 3.989 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.198 0.802 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -1.600 14.847 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.051 3.949 6 H 0.103 0.897 7 N -0.353 5.353 8 C 0.374 3.626 9 O -0.410 6.410 10 C -0.199 4.199 11 C -0.162 4.162 12 N -0.138 5.138 13 N -0.046 5.046 14 N -0.052 5.052 15 C -0.063 4.063 16 C -0.188 4.188 17 C 0.053 3.947 18 N -0.308 5.308 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.189 4.189 22 N -0.539 5.539 23 Si 0.728 3.272 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.215 0.785 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.535 -1.418 15.393 16.783 hybrid contribution -1.149 -0.449 -1.435 1.893 sum 5.386 -1.867 13.958 15.077 Atomic orbital electron populations 1.21770 0.95614 1.01388 1.00389 1.20368 0.93222 0.93514 0.86493 0.95510 1.22419 0.93141 1.01948 0.99994 1.21166 0.94595 0.96617 0.82513 0.89715 1.46065 1.11987 1.47848 1.29434 1.16709 0.82956 0.80508 0.82472 1.90823 1.54205 1.39801 1.56211 1.22144 0.89186 1.07883 1.00704 1.23898 1.01764 0.98746 0.91826 1.74884 0.98011 1.18648 1.22218 1.78268 1.17934 1.06070 1.02302 1.47648 1.12052 1.30820 1.14703 1.22553 0.86753 0.94122 1.02902 1.22588 0.99904 0.99704 0.96616 1.20628 0.83776 0.96993 0.93349 1.44094 1.02713 1.64974 1.19063 1.19008 0.97799 1.36896 0.85250 0.91644 1.25220 0.98116 0.98152 0.97377 1.70028 1.28070 1.39366 1.16414 0.86456 0.79605 0.80340 0.80827 1.20785 1.21679 1.20948 0.92821 0.94355 0.91742 0.91541 0.92459 0.76662 0.78494 0.88612 0.87906 0.86578 0.92696 0.92390 0.95903 0.90485 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.99 37.16 0.30 -2.05 16 2 C 0.17 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -2.04 4.84 -26.60 -0.13 -2.17 16 5 C 0.15 2.39 2.38 -67.89 -0.16 2.23 16 6 H 0.08 1.48 7.65 -51.93 -0.40 1.08 16 7 N -0.70 -8.65 5.06 -54.90 -0.28 -8.92 16 8 C 0.59 7.89 7.76 -12.61 -0.10 7.80 16 9 O -0.53 -8.64 14.65 5.25 0.08 -8.56 16 10 C -0.06 -0.77 6.98 -82.33 -0.57 -1.34 16 11 C 0.00 -0.02 11.54 -17.35 -0.20 -0.22 16 12 N -0.27 -3.59 12.35 30.47 0.38 -3.21 16 13 N -0.06 -0.84 13.14 60.35 0.79 -0.05 16 14 N -0.26 -2.97 3.79 -64.12 -0.24 -3.22 16 15 C 0.08 0.63 10.81 59.85 0.65 1.28 16 16 C -0.15 -2.69 5.65 -26.61 -0.15 -2.84 16 17 C 0.18 4.07 5.27 -3.71 -0.02 4.05 16 18 N -0.59 -13.63 2.95 -164.78 -0.49 -14.12 16 19 C -0.26 -6.68 8.37 -15.06 -0.13 -6.81 16 20 H 0.07 1.64 6.44 -52.49 -0.34 1.31 16 21 C 0.01 0.31 4.87 -17.43 -0.08 0.22 16 22 N -0.90 -25.35 11.73 55.49 0.65 -24.70 16 23 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 H 0.05 0.94 7.42 -51.93 -0.39 0.55 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.25 7.67 -51.93 -0.40 0.86 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.69 7.63 -40.82 -0.31 3.38 16 33 H 0.20 1.34 7.55 -52.49 -0.40 0.94 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.12 1.05 6.69 -51.93 -0.35 0.70 16 37 H 0.05 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.97 6.61 -51.93 -0.34 1.62 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 LS Contribution 333.78 15.07 5.03 5.03 Total: -1.00 -31.55 333.78 -5.80 -37.35 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.86 Total: 1.27 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.84 Total: 3.20 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.81 Total: -54.22 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.55 -5.80 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.298 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds