Wall clock time and date at job start Tue Mar 31 2020 03:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.58733 * 2 1 4 4 C 1.53201 * 109.58280 * 120.44276 * 2 1 3 5 5 C 1.53044 * 109.31129 * 174.43824 * 4 2 1 6 6 H 1.08998 * 109.46418 * 58.62338 * 5 4 2 7 7 N 1.46490 * 109.46031 * 178.60085 * 5 4 2 8 8 C 1.34778 * 120.00289 * 205.02415 * 7 5 4 9 9 O 1.21626 * 119.99597 * 355.40590 * 8 7 5 10 10 C 1.47227 * 120.00462 * 175.40400 * 8 7 5 11 11 C 1.37007 * 127.18702 * 4.46108 * 10 8 7 12 12 N 1.33326 * 106.37110 * 180.02562 * 11 10 8 13 13 N 1.28514 * 109.44049 * 0.02562 * 12 11 10 14 14 N 1.28716 * 110.63650 * 359.71349 * 13 12 11 15 15 C 1.46500 * 126.03476 * 180.29531 * 14 13 12 16 16 C 1.53048 * 109.52224 * 298.61389 * 5 4 2 17 17 C 1.53184 * 109.31617 * 61.37496 * 16 5 4 18 18 N 1.46927 * 108.77437 * 305.36218 * 17 16 5 19 19 C 1.36938 * 120.63338 * 233.58575 * 18 17 16 20 20 H 1.08000 * 120.00000 * 144.96337 * 19 18 17 21 21 C 1.38809 * 119.99786 * 324.96890 * 19 18 17 22 22 N 1.31622 * 120.00249 * 343.11664 * 21 19 18 23 23 Si 1.86804 * 119.99804 * 163.11930 * 21 19 18 24 24 H 1.48494 * 109.47188 * 59.99780 * 23 21 19 25 25 H 1.48503 * 109.47161 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47242 * 299.99675 * 23 21 19 27 27 H 1.08997 * 109.47378 * 180.28371 * 1 2 3 28 28 H 1.08999 * 109.46891 * 300.28211 * 1 2 3 29 29 H 1.08997 * 109.47092 * 60.28311 * 1 2 3 30 30 H 1.08992 * 109.50813 * 54.47702 * 4 2 1 31 31 H 1.08999 * 109.48154 * 294.37618 * 4 2 1 32 32 H 0.96999 * 120.00101 * 25.29960 * 7 5 4 33 33 H 1.07997 * 126.81923 * 0.02902 * 11 10 8 34 34 H 1.09001 * 109.47241 * 264.55294 * 15 14 13 35 35 H 1.08993 * 109.47160 * 24.55895 * 15 14 13 36 36 H 1.09005 * 109.46848 * 144.55824 * 15 14 13 37 37 H 1.09004 * 109.49314 * 181.32499 * 16 5 4 38 38 H 1.08996 * 109.49829 * 301.41426 * 16 5 4 39 39 H 1.08998 * 109.58733 * 65.14961 * 17 16 5 40 40 H 1.09002 * 109.58750 * 185.43253 * 17 16 5 41 41 H 0.96991 * 120.00066 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7313 1.2444 5 6 3.5674 -0.8495 1.1692 6 1 4.0059 0.1460 1.0995 7 7 4.0651 -1.5188 2.3735 8 6 5.3291 -1.3051 2.7897 9 8 6.0825 -0.6236 2.1210 10 6 5.7978 -1.8967 4.0538 11 6 5.1086 -2.7503 4.8744 12 7 5.9189 -3.0244 5.8971 13 7 7.0303 -2.3981 5.7421 14 7 7.0163 -1.7120 4.6532 15 6 8.1089 -0.8783 4.1457 16 6 3.9568 -1.6657 -0.0656 17 6 3.4651 -0.9453 -1.3249 18 7 2.0226 -0.6981 -1.1953 19 6 1.1537 -1.1099 -2.1704 20 1 0.1668 -1.4573 -1.9026 21 6 1.5416 -1.0810 -3.5029 22 7 2.5844 -0.3666 -3.8694 23 14 0.5833 -2.0561 -4.7759 24 1 -0.8251 -1.5863 -4.8019 25 1 1.1953 -1.8584 -6.1144 26 1 0.6177 -3.4982 -4.4235 27 1 -0.3634 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5094 -0.8925 30 1 1.6030 -1.7273 1.2889 31 1 1.7657 -0.1699 2.1365 32 1 3.4862 -2.1188 2.8692 33 1 4.1077 -3.1266 4.7229 34 1 7.9502 0.1554 4.4532 35 1 9.0562 -1.2359 4.5489 36 1 8.1330 -0.9339 3.0574 37 1 5.0412 -1.7695 -0.1058 38 1 3.4983 -2.6529 -0.0085 39 1 3.9904 0.0037 -1.4316 40 1 3.6542 -1.5679 -2.1993 41 1 2.8552 -0.3461 -4.8006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947265386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:25 Heat of formation + Delta-G solvation = 58.348021 kcal Electronic energy + Delta-G solvation = -23860.287183 eV Core-core repulsion = 20391.102311 eV Total energy + Delta-G solvation = -3469.184871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.38472 -40.96907 -39.20461 -36.35919 -35.53924 -34.24871 -33.34019 -32.38375 -31.01780 -29.03828 -27.95243 -26.74672 -25.16819 -23.90130 -23.33266 -22.23541 -21.54822 -20.92885 -19.20988 -18.22214 -17.87767 -17.72619 -17.21109 -16.81068 -15.95687 -15.76399 -15.66302 -15.41931 -15.18439 -14.81719 -14.51843 -14.30766 -14.27591 -13.88942 -13.31393 -13.21628 -12.95975 -12.70087 -12.65994 -12.59275 -12.34434 -12.25007 -12.13412 -11.85458 -11.68159 -11.50709 -11.43915 -11.28747 -11.03531 -10.65756 -10.51512 -10.08647 -8.54745 -7.82969 -5.33862 -0.17219 1.05549 1.19110 1.49110 1.51160 1.57150 1.97232 2.02459 2.54084 3.27183 3.33518 3.41178 3.64078 3.70884 3.88414 4.02312 4.07225 4.19910 4.29558 4.42400 4.52080 4.60768 4.65240 4.74977 4.78367 4.83371 4.93107 4.99827 5.10727 5.11920 5.19980 5.28897 5.39747 5.43679 5.52180 5.60588 5.71702 5.76986 6.37430 6.48205 7.00108 7.20440 7.21919 7.90554 8.46361 9.23275 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029190 B = 0.003451 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.989568 B = 8112.136358 C = 8442.655055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.011 0.989 4 C -0.119 4.119 5 C 0.167 3.833 6 H 0.065 0.935 7 N -0.688 5.688 8 C 0.595 3.405 9 O -0.566 6.566 10 C -0.079 4.079 11 C 0.016 3.984 12 N -0.301 5.301 13 N -0.079 5.079 14 N -0.254 5.254 15 C 0.071 3.929 16 C -0.132 4.132 17 C 0.187 3.813 18 N -0.601 5.601 19 C -0.254 4.254 20 H 0.075 0.925 21 C -0.047 4.047 22 N -0.936 5.936 23 Si 0.958 3.042 24 H -0.273 1.273 25 H -0.301 1.301 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.419 0.581 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.049 0.951 38 H 0.065 0.935 39 H -0.009 1.009 40 H 0.040 0.960 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -2.670 17.286 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.159 4.159 5 C 0.063 3.937 6 H 0.083 0.917 7 N -0.339 5.339 8 C 0.380 3.620 9 O -0.445 6.445 10 C -0.213 4.213 11 C -0.145 4.145 12 N -0.162 5.162 13 N -0.059 5.059 14 N -0.051 5.051 15 C -0.069 4.069 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.325 5.325 19 C -0.385 4.385 20 H 0.092 0.908 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.787 3.213 24 H -0.199 1.199 25 H -0.227 1.227 26 H -0.203 1.203 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.257 0.743 33 H 0.253 0.747 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.009 0.991 40 H 0.059 0.941 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.165 -2.514 17.899 18.798 hybrid contribution -0.698 -0.056 -2.146 2.257 sum 4.466 -2.570 15.753 16.575 Atomic orbital electron populations 1.21691 0.94054 1.01672 1.00934 1.20647 0.94619 0.92910 0.86507 0.97128 1.22215 0.92087 1.02636 0.98925 1.20755 0.95161 0.95279 0.82536 0.91712 1.45671 1.12028 1.47850 1.28327 1.16826 0.82744 0.79840 0.82599 1.90823 1.55141 1.41251 1.57274 1.21988 0.89850 1.09000 1.00506 1.24534 1.02698 0.97115 0.90198 1.74879 0.98535 1.19457 1.23371 1.78242 1.18294 1.06558 1.02836 1.47941 1.12513 1.30394 1.14265 1.22784 0.87136 0.94619 1.02351 1.22321 0.99389 0.99714 0.95769 1.20347 0.83998 0.95237 0.94388 1.44362 1.02445 1.65730 1.19996 1.19379 0.98133 1.35196 0.85758 0.90795 1.25947 0.99338 0.99577 0.99398 1.70188 1.30185 1.41642 1.16093 0.85487 0.78545 0.79194 0.78089 1.19889 1.22745 1.20309 0.92589 0.90496 0.94530 0.90134 0.88845 0.74301 0.74719 0.87338 0.85524 0.87581 0.93201 0.91639 0.99086 0.94114 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.99 71.98 0.58 -3.54 16 2 C 0.16 5.88 3.50 44.98 0.16 6.04 16 3 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 4 C -0.12 -3.19 4.84 30.68 0.15 -3.04 16 5 C 0.17 4.86 2.38 45.02 0.11 4.97 16 6 H 0.06 2.21 7.65 -2.39 -0.02 2.19 16 7 N -0.69 -14.76 5.06 -445.86 -2.26 -17.02 16 8 C 0.60 14.71 7.76 86.61 0.67 15.38 16 9 O -0.57 -17.93 14.65 -4.11 -0.06 -17.99 16 10 C -0.08 -1.69 6.98 40.40 0.28 -1.41 16 11 C 0.02 0.28 11.54 84.18 0.97 1.26 16 12 N -0.30 -7.16 12.35 -57.50 -0.71 -7.87 16 13 N -0.08 -1.90 13.14 37.02 0.49 -1.42 16 14 N -0.25 -5.46 3.79 -356.77 -1.35 -6.81 16 15 C 0.07 1.07 10.81 127.77 1.38 2.45 16 16 C -0.13 -4.73 5.65 30.67 0.17 -4.56 16 17 C 0.19 8.80 5.27 86.36 0.46 9.26 16 18 N -0.60 -28.17 2.95 -675.24 -1.99 -30.17 16 19 C -0.25 -13.11 8.37 84.03 0.70 -12.41 16 20 H 0.07 3.64 6.44 -2.91 -0.02 3.62 16 21 C -0.05 -2.54 4.87 84.86 0.41 -2.13 16 22 N -0.94 -55.18 11.73 21.65 0.25 -54.93 16 23 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H 0.06 1.79 7.42 -2.39 -0.02 1.77 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.37 7.67 -2.39 -0.02 1.36 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.42 5.80 7.63 -92.71 -0.71 5.09 16 33 H 0.24 2.04 7.55 -2.91 -0.02 2.02 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.87 6.69 -2.38 -0.02 1.85 16 37 H 0.05 1.83 8.11 -2.39 -0.02 1.81 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.04 2.18 6.61 -2.39 -0.02 2.16 16 41 H 0.25 14.28 8.31 -92.72 -0.77 13.51 16 Total: -1.00 -71.19 333.78 2.78 -68.41 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.34 Total: 9.74 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.04 Total: 12.28 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -5.57 Total: -118.22 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -71.19 2.78 -68.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.763 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds