Wall clock time and date at job start Tue Mar 31 2020 03:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70019 * 2 1 4 4 C 1.53195 * 109.58511 * 120.35001 * 2 1 3 5 5 C 1.53039 * 109.31038 * 174.42695 * 4 2 1 6 6 H 1.09010 * 109.45979 * 178.61289 * 5 4 2 7 7 N 1.46504 * 109.46374 * 58.65842 * 5 4 2 8 8 C 1.34771 * 120.00226 * 155.00114 * 7 5 4 9 9 O 1.21618 * 120.00148 * 4.90035 * 8 7 5 10 10 C 1.47230 * 119.99985 * 184.90728 * 8 7 5 11 11 C 1.37010 * 127.19154 * 357.30803 * 10 8 7 12 12 N 1.33316 * 106.37190 * 179.90382 * 11 10 8 13 13 N 1.28508 * 109.44432 * 0.37205 * 12 11 10 14 14 N 1.28722 * 110.63771 * 359.76280 * 13 12 11 15 15 C 1.46494 * 126.03485 * 179.97438 * 14 13 12 16 16 C 1.53038 * 109.54178 * 298.63361 * 5 4 2 17 17 C 1.53188 * 109.30928 * 61.36345 * 16 5 4 18 18 N 1.46924 * 109.59170 * 239.64355 * 2 1 3 19 19 C 1.36935 * 120.63015 * 6.57493 * 18 2 1 20 20 H 1.08001 * 120.00302 * 321.69660 * 19 18 2 21 21 C 1.38814 * 119.99779 * 141.68975 * 19 18 2 22 22 N 1.31624 * 119.99881 * 349.52398 * 21 19 18 23 23 Si 1.86801 * 119.99871 * 169.52065 * 21 19 18 24 24 H 1.48497 * 109.47055 * 60.00381 * 23 21 19 25 25 H 1.48500 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47080 * 300.00111 * 23 21 19 27 27 H 1.08993 * 109.47601 * 299.64905 * 1 2 3 28 28 H 1.09006 * 109.47143 * 59.65321 * 1 2 3 29 29 H 1.09004 * 109.46646 * 179.64348 * 1 2 3 30 30 H 1.08994 * 109.50110 * 54.47488 * 4 2 1 31 31 H 1.09003 * 109.52427 * 294.38923 * 4 2 1 32 32 H 0.97000 * 119.99810 * 334.99218 * 7 5 4 33 33 H 1.07997 * 126.80877 * 0.02562 * 11 10 8 34 34 H 1.09002 * 109.47109 * 270.51019 * 15 14 13 35 35 H 1.08994 * 109.47675 * 30.51743 * 15 14 13 36 36 H 1.09003 * 109.46877 * 150.51754 * 15 14 13 37 37 H 1.08995 * 109.50247 * 181.32114 * 16 5 4 38 38 H 1.09005 * 109.49552 * 301.42078 * 16 5 4 39 39 H 1.09005 * 109.58842 * 185.58011 * 17 16 5 40 40 H 1.09002 * 109.58691 * 65.16263 * 17 16 5 41 41 H 0.96998 * 119.99519 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8478 1.1703 6 1 3.9378 -1.3445 2.0672 7 7 4.1570 0.4900 1.0751 8 6 5.4210 0.7007 1.4924 9 8 6.1025 -0.2353 1.8646 10 6 5.9769 2.0640 1.4979 11 6 5.3634 3.2103 1.0655 12 7 6.2352 4.1998 1.2611 13 7 7.3161 3.7237 1.7675 14 7 7.2183 2.4507 1.9309 15 6 8.2516 1.5706 2.4820 16 6 3.9570 -1.6656 -0.0632 17 6 3.4651 -0.9469 -1.3235 18 7 2.0226 -0.6995 -1.1944 19 6 1.1538 -1.1137 -2.1684 20 1 0.1868 -1.5105 -1.8965 21 6 1.5158 -1.0233 -3.5055 22 7 2.5966 -0.3562 -3.8510 23 14 0.4691 -1.8484 -4.8143 24 1 -0.9050 -1.2867 -4.7760 25 1 1.0667 -1.6053 -6.1519 26 1 0.4141 -3.3096 -4.5555 27 1 -0.3634 0.5083 0.8930 28 1 -0.3634 0.5192 -0.8869 29 1 -0.3633 -1.0277 -0.0064 30 1 1.6030 -1.7252 1.2915 31 1 1.7659 -0.1671 2.1372 32 1 3.6375 1.2242 0.7116 33 1 4.3700 3.2955 0.6506 34 1 8.8893 1.2093 1.6751 35 1 8.8547 2.1243 3.2016 36 1 7.7798 0.7231 2.9792 37 1 5.0412 -1.7694 -0.1033 38 1 3.4984 -2.6527 -0.0049 39 1 3.6519 -1.5718 -2.1969 40 1 3.9904 0.0020 -1.4316 41 1 2.8493 -0.2928 -4.7853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947265387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:29 Heat of formation + Delta-G solvation = 82.717217 kcal Electronic energy + Delta-G solvation = -24431.658192 eV Core-core repulsion = 20963.530048 eV Total energy + Delta-G solvation = -3468.128144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.33428 -39.82883 -37.73144 -34.94280 -34.24700 -32.51239 -31.97904 -30.82437 -29.58622 -28.13467 -26.46046 -25.09326 -24.08759 -22.62634 -21.98418 -20.80828 -20.62698 -18.76699 -18.19793 -16.86696 -16.72666 -16.44188 -15.51530 -15.19672 -14.78170 -14.45510 -14.20548 -14.03788 -13.80653 -13.46099 -13.20793 -13.11270 -12.91811 -12.53671 -12.16043 -11.91214 -11.48847 -11.26124 -11.19842 -11.03253 -10.77990 -10.69342 -10.51311 -10.30272 -10.24011 -10.15869 -10.01108 -9.79210 -9.56343 -9.40563 -8.80791 -8.50953 -6.55764 -5.83755 -3.38169 0.89315 2.02663 2.25813 3.11582 3.20834 3.34146 3.40450 3.40939 4.26530 4.43083 4.45463 4.67996 4.89778 4.95037 5.22670 5.23483 5.28435 5.31554 5.50053 5.52258 5.55772 5.88238 5.88328 6.04105 6.12085 6.23730 6.27723 6.30329 6.39957 6.47067 6.51808 6.63938 6.82151 6.95980 7.03832 7.26389 7.53379 7.55381 7.78988 8.11903 8.28110 8.47070 9.17759 9.77604 10.39709 11.23962 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.004285 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.670347 B = 6532.945544 C = 6784.621545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.140 4.140 5 C 0.158 3.842 6 H 0.075 0.925 7 N -0.692 5.692 8 C 0.594 3.406 9 O -0.544 6.544 10 C -0.065 4.065 11 C 0.004 3.996 12 N -0.274 5.274 13 N -0.066 5.066 14 N -0.258 5.258 15 C 0.078 3.922 16 C -0.155 4.155 17 C 0.179 3.821 18 N -0.584 5.584 19 C -0.259 4.259 20 H 0.063 0.937 21 C 0.014 3.986 22 N -0.898 5.898 23 Si 0.900 3.100 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.283 1.283 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.199 0.801 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 2.014 12.483 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 H 0.037 0.963 4 C -0.180 4.180 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.343 5.343 8 C 0.378 3.622 9 O -0.423 6.423 10 C -0.199 4.199 11 C -0.157 4.157 12 N -0.137 5.137 13 N -0.047 5.047 14 N -0.054 5.054 15 C -0.063 4.063 16 C -0.195 4.195 17 C 0.053 3.947 18 N -0.307 5.307 19 C -0.389 4.389 20 H 0.081 0.919 21 C -0.186 4.186 22 N -0.541 5.541 23 Si 0.729 3.271 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.216 0.784 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.481 2.580 12.757 14.540 hybrid contribution -1.217 -1.030 -1.166 1.975 sum 5.264 1.550 11.591 12.825 Atomic orbital electron populations 1.21767 0.95667 1.01537 1.00257 1.20417 0.93365 0.93010 0.87153 0.96287 1.22402 0.93429 1.02653 0.99522 1.20996 0.93266 0.81267 0.99037 0.90661 1.45876 1.12815 1.13520 1.62082 1.16644 0.82456 0.84975 0.78175 1.90763 1.58952 1.43077 1.49477 1.22076 0.88988 0.97800 1.11040 1.23950 1.01811 0.87565 1.02345 1.74879 0.97633 1.26716 1.14428 1.78242 1.19116 0.90843 1.16509 1.47601 1.11583 1.07167 1.39065 1.22522 0.89402 0.93551 1.00793 1.22580 1.00064 0.99502 0.97358 1.20625 0.83753 0.96805 0.93519 1.44002 1.02638 1.64972 1.19132 1.18971 0.99237 1.35639 0.85039 0.91905 1.25326 0.97614 0.97900 0.97740 1.69969 1.25839 1.41719 1.16547 0.86440 0.80066 0.79502 0.81087 1.20751 1.21675 1.20918 0.94384 0.91832 0.92754 0.90372 0.92409 0.75768 0.78408 0.88681 0.88184 0.86603 0.92633 0.91525 0.90771 0.96181 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.04 37.15 0.30 -2.00 16 2 C 0.17 3.02 3.20 -67.60 -0.22 2.81 16 3 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 4 C -0.14 -2.10 5.07 -26.61 -0.13 -2.24 16 5 C 0.16 2.44 2.74 -67.89 -0.19 2.25 16 6 H 0.08 1.14 7.65 -51.92 -0.40 0.74 16 7 N -0.69 -10.02 4.25 -54.90 -0.23 -10.25 16 8 C 0.59 8.82 7.76 -12.61 -0.10 8.73 16 9 O -0.54 -9.00 14.55 5.26 0.08 -8.92 16 10 C -0.06 -0.90 6.98 -82.33 -0.57 -1.47 16 11 C 0.00 0.05 11.54 -17.35 -0.20 -0.15 16 12 N -0.27 -4.18 12.35 30.47 0.38 -3.80 16 13 N -0.07 -0.97 13.14 60.35 0.79 -0.18 16 14 N -0.26 -3.37 3.79 -64.12 -0.24 -3.62 16 15 C 0.08 0.71 10.91 59.84 0.65 1.36 16 16 C -0.15 -2.81 5.77 -26.61 -0.15 -2.96 16 17 C 0.18 3.94 4.97 -3.71 -0.02 3.93 16 18 N -0.58 -13.10 2.94 -164.78 -0.48 -13.58 16 19 C -0.26 -6.53 8.31 -15.06 -0.13 -6.66 16 20 H 0.06 1.56 6.50 -52.49 -0.34 1.22 16 21 C 0.01 0.38 5.02 -17.43 -0.09 0.29 16 22 N -0.90 -25.01 11.60 55.49 0.64 -24.36 16 23 Si 0.90 20.85 29.57 -169.99 -5.03 15.82 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.20 7.71 -51.93 -0.40 0.80 16 29 H 0.05 0.94 7.37 -51.93 -0.38 0.56 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.41 5.55 5.89 -40.82 -0.24 5.31 16 33 H 0.20 2.11 7.55 -52.49 -0.40 1.72 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.12 1.10 6.48 -51.93 -0.34 0.76 16 37 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.89 6.66 -51.93 -0.35 1.54 16 40 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -30.50 329.28 -5.66 -36.16 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.68 Total: 3.88 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.84 Total: 3.89 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.85 Total: -55.79 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.50 -5.66 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.873 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds