Wall clock time and date at job start Tue Mar 31 2020 03:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70019 * 2 1 4 4 C 1.53195 * 109.58511 * 120.35001 * 2 1 3 5 5 C 1.53039 * 109.31038 * 174.42695 * 4 2 1 6 6 H 1.09010 * 109.45979 * 178.61289 * 5 4 2 7 7 N 1.46504 * 109.46374 * 58.65842 * 5 4 2 8 8 C 1.34771 * 120.00226 * 155.00114 * 7 5 4 9 9 O 1.21618 * 120.00148 * 4.90035 * 8 7 5 10 10 C 1.47230 * 119.99985 * 184.90728 * 8 7 5 11 11 C 1.37010 * 127.19154 * 357.30803 * 10 8 7 12 12 N 1.33316 * 106.37190 * 179.90382 * 11 10 8 13 13 N 1.28508 * 109.44432 * 0.37205 * 12 11 10 14 14 N 1.28722 * 110.63771 * 359.76280 * 13 12 11 15 15 C 1.46494 * 126.03485 * 179.97438 * 14 13 12 16 16 C 1.53038 * 109.54178 * 298.63361 * 5 4 2 17 17 C 1.53188 * 109.30928 * 61.36345 * 16 5 4 18 18 N 1.46924 * 109.59170 * 239.64355 * 2 1 3 19 19 C 1.36935 * 120.63015 * 6.57493 * 18 2 1 20 20 H 1.08001 * 120.00302 * 321.69660 * 19 18 2 21 21 C 1.38814 * 119.99779 * 141.68975 * 19 18 2 22 22 N 1.31624 * 119.99881 * 349.52398 * 21 19 18 23 23 Si 1.86801 * 119.99871 * 169.52065 * 21 19 18 24 24 H 1.48497 * 109.47055 * 60.00381 * 23 21 19 25 25 H 1.48500 * 109.47051 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47080 * 300.00111 * 23 21 19 27 27 H 1.08993 * 109.47601 * 299.64905 * 1 2 3 28 28 H 1.09006 * 109.47143 * 59.65321 * 1 2 3 29 29 H 1.09004 * 109.46646 * 179.64348 * 1 2 3 30 30 H 1.08994 * 109.50110 * 54.47488 * 4 2 1 31 31 H 1.09003 * 109.52427 * 294.38923 * 4 2 1 32 32 H 0.97000 * 119.99810 * 334.99218 * 7 5 4 33 33 H 1.07997 * 126.80877 * 0.02562 * 11 10 8 34 34 H 1.09002 * 109.47109 * 270.51019 * 15 14 13 35 35 H 1.08994 * 109.47675 * 30.51743 * 15 14 13 36 36 H 1.09003 * 109.46877 * 150.51754 * 15 14 13 37 37 H 1.08995 * 109.50247 * 181.32114 * 16 5 4 38 38 H 1.09005 * 109.49552 * 301.42078 * 16 5 4 39 39 H 1.09005 * 109.58842 * 185.58011 * 17 16 5 40 40 H 1.09002 * 109.58691 * 65.16263 * 17 16 5 41 41 H 0.96998 * 119.99519 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8478 1.1703 6 1 3.9378 -1.3445 2.0672 7 7 4.1570 0.4900 1.0751 8 6 5.4210 0.7007 1.4924 9 8 6.1025 -0.2353 1.8646 10 6 5.9769 2.0640 1.4979 11 6 5.3634 3.2103 1.0655 12 7 6.2352 4.1998 1.2611 13 7 7.3161 3.7237 1.7675 14 7 7.2183 2.4507 1.9309 15 6 8.2516 1.5706 2.4820 16 6 3.9570 -1.6656 -0.0632 17 6 3.4651 -0.9469 -1.3235 18 7 2.0226 -0.6995 -1.1944 19 6 1.1538 -1.1137 -2.1684 20 1 0.1868 -1.5105 -1.8965 21 6 1.5158 -1.0233 -3.5055 22 7 2.5966 -0.3562 -3.8510 23 14 0.4691 -1.8484 -4.8143 24 1 -0.9050 -1.2867 -4.7760 25 1 1.0667 -1.6053 -6.1519 26 1 0.4141 -3.3096 -4.5555 27 1 -0.3634 0.5083 0.8930 28 1 -0.3634 0.5192 -0.8869 29 1 -0.3633 -1.0277 -0.0064 30 1 1.6030 -1.7252 1.2915 31 1 1.7659 -0.1671 2.1372 32 1 3.6375 1.2242 0.7116 33 1 4.3700 3.2955 0.6506 34 1 8.8893 1.2093 1.6751 35 1 8.8547 2.1243 3.2016 36 1 7.7798 0.7231 2.9792 37 1 5.0412 -1.7694 -0.1033 38 1 3.4984 -2.6527 -0.0049 39 1 3.6519 -1.5718 -2.1969 40 1 3.9904 0.0020 -1.4316 41 1 2.8493 -0.2928 -4.7853 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947265387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:28 Heat of formation + Delta-G solvation = 61.970268 kcal Electronic energy + Delta-G solvation = -24432.557847 eV Core-core repulsion = 20963.530048 eV Total energy + Delta-G solvation = -3469.027799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.38953 -41.09414 -39.15099 -36.15637 -35.50195 -34.10613 -33.32000 -32.27724 -31.07266 -29.01625 -27.94518 -26.78807 -25.26474 -23.88674 -23.41255 -22.21395 -21.82410 -20.25058 -19.28120 -18.18834 -17.89240 -17.77648 -17.04491 -16.65317 -16.11799 -15.69576 -15.63449 -15.51305 -15.21327 -14.71002 -14.38618 -14.26441 -14.09554 -13.89118 -13.30911 -13.28044 -13.13286 -12.77940 -12.63715 -12.49493 -12.29448 -12.23831 -12.18395 -11.98177 -11.65044 -11.39452 -11.31193 -11.20867 -10.97503 -10.65797 -10.48111 -10.07515 -8.42308 -7.80021 -5.35787 -0.17937 1.07141 1.16953 1.48883 1.50415 1.55817 1.97427 2.10676 2.54183 3.25992 3.36163 3.42145 3.68642 3.71397 3.93722 4.02740 4.11312 4.22028 4.23354 4.47905 4.52214 4.61097 4.66422 4.71674 4.83632 4.89580 4.98277 5.01118 5.08120 5.16625 5.22102 5.30703 5.45305 5.50550 5.56575 5.63581 5.77177 5.79176 6.36407 6.52695 6.96034 7.20429 7.25312 7.94231 8.49593 9.24249 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.004285 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.670347 B = 6532.945544 C = 6784.621545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.158 3.842 3 H 0.026 0.974 4 C -0.127 4.127 5 C 0.165 3.835 6 H 0.090 0.910 7 N -0.688 5.688 8 C 0.599 3.401 9 O -0.561 6.561 10 C -0.077 4.077 11 C 0.009 3.991 12 N -0.300 5.300 13 N -0.076 5.076 14 N -0.251 5.251 15 C 0.069 3.931 16 C -0.143 4.143 17 C 0.190 3.810 18 N -0.599 5.599 19 C -0.251 4.251 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.933 5.933 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.301 1.301 26 H -0.280 1.280 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.410 0.590 33 H 0.221 0.779 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.001 0.999 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 1.937 14.576 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.043 0.957 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.108 0.892 7 N -0.339 5.339 8 C 0.383 3.617 9 O -0.441 6.441 10 C -0.211 4.211 11 C -0.153 4.153 12 N -0.162 5.162 13 N -0.057 5.057 14 N -0.049 5.049 15 C -0.070 4.070 16 C -0.183 4.183 17 C 0.064 3.936 18 N -0.324 5.324 19 C -0.382 4.382 20 H 0.085 0.915 21 C -0.237 4.237 22 N -0.578 5.578 23 Si 0.783 3.217 24 H -0.200 1.200 25 H -0.228 1.228 26 H -0.206 1.206 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.782 2.510 14.886 16.166 hybrid contribution -0.976 -1.015 -1.754 2.249 sum 4.806 1.495 13.133 14.064 Atomic orbital electron populations 1.21710 0.94710 1.01309 1.00922 1.20693 0.94267 0.93281 0.86472 0.95655 1.22272 0.92491 1.02817 0.99003 1.20902 0.93870 0.81333 0.97811 0.89204 1.45795 1.12845 1.13297 1.61997 1.16679 0.82282 0.85075 0.77631 1.90756 1.59341 1.43686 1.50301 1.22015 0.89653 0.97430 1.12050 1.24359 1.02444 0.86987 1.01462 1.74859 0.98238 1.27631 1.15493 1.78189 1.19151 0.91495 1.16888 1.47937 1.11884 1.07057 1.38009 1.22843 0.88971 0.93419 1.01730 1.22389 0.99529 0.99541 0.96802 1.20323 0.84015 0.95408 0.93824 1.44222 1.02305 1.65826 1.20002 1.19274 0.99330 1.33942 0.85646 0.91525 1.25960 0.98832 0.99230 0.99685 1.70117 1.27670 1.43986 1.16020 0.85555 0.78911 0.78700 0.78514 1.19969 1.22762 1.20602 0.90549 0.94397 0.93342 0.90257 0.88832 0.75238 0.76246 0.87636 0.85389 0.86820 0.93127 0.91511 0.95048 0.98074 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.04 71.98 0.58 -3.48 16 2 C 0.16 5.36 3.20 44.97 0.14 5.51 16 3 H 0.03 0.86 6.64 -2.38 -0.02 0.84 16 4 C -0.13 -3.34 5.07 30.67 0.16 -3.18 16 5 C 0.16 4.66 2.74 45.02 0.12 4.79 16 6 H 0.09 2.40 7.65 -2.38 -0.02 2.38 16 7 N -0.69 -18.48 4.25 -445.86 -1.90 -20.37 16 8 C 0.60 16.76 7.76 86.61 0.67 17.43 16 9 O -0.56 -17.59 14.55 -4.09 -0.06 -17.65 16 10 C -0.08 -2.02 6.98 40.41 0.28 -1.74 16 11 C 0.01 0.22 11.54 84.18 0.97 1.19 16 12 N -0.30 -8.86 12.35 -57.50 -0.71 -9.57 16 13 N -0.08 -2.15 13.14 37.02 0.49 -1.66 16 14 N -0.25 -6.22 3.79 -356.78 -1.35 -7.57 16 15 C 0.07 1.14 10.91 127.77 1.39 2.53 16 16 C -0.14 -5.05 5.77 30.67 0.18 -4.87 16 17 C 0.19 8.51 4.97 86.36 0.43 8.94 16 18 N -0.60 -26.64 2.94 -675.24 -1.98 -28.63 16 19 C -0.25 -12.67 8.31 84.03 0.70 -11.97 16 20 H 0.07 3.27 6.50 -2.91 -0.02 3.25 16 21 C -0.04 -2.18 5.02 84.86 0.43 -1.76 16 22 N -0.93 -53.57 11.60 21.65 0.25 -53.32 16 23 Si 0.95 43.48 29.57 68.60 2.03 45.51 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.37 7.71 -2.38 -0.02 1.35 16 29 H 0.05 1.57 7.37 -2.38 -0.02 1.55 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.41 10.33 5.89 -92.71 -0.55 9.78 16 33 H 0.22 4.30 7.55 -2.91 -0.02 4.27 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 1.97 6.48 -2.39 -0.02 1.95 16 37 H 0.05 1.83 8.11 -2.39 -0.02 1.81 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.03 1.65 6.66 -2.38 -0.02 1.63 16 40 H 0.00 0.06 7.74 -2.39 -0.02 0.04 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -66.62 329.28 3.32 -63.29 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.51 Total: 16.59 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.05 Total: 13.38 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.21 Total: -121.12 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.06 Total: -17.65 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.62 3.32 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.264 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds