Wall clock time and date at job start Tue Mar 31 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58320 * 2 1 4 4 C 1.53196 * 109.58772 * 239.71705 * 2 1 3 5 5 C 1.53035 * 109.30953 * 294.70471 * 4 2 1 6 6 H 1.09000 * 109.46360 * 58.64404 * 5 4 2 7 7 N 1.46499 * 109.45850 * 178.61377 * 5 4 2 8 8 C 1.34776 * 120.00576 * 204.99852 * 7 5 4 9 9 O 1.21622 * 119.99562 * 4.27611 * 8 7 5 10 10 C 1.47228 * 120.00518 * 184.27822 * 8 7 5 11 11 C 1.37004 * 127.19189 * 5.47153 * 10 8 7 12 12 N 1.33316 * 106.37871 * 179.97438 * 11 10 8 13 13 N 1.28515 * 109.43645 * 359.97438 * 12 11 10 14 14 N 1.28713 * 110.63945 * 0.02562 * 13 12 11 15 15 C 1.46499 * 126.04047 * 180.02562 * 14 13 12 16 16 C 1.53035 * 109.53926 * 298.63127 * 5 4 2 17 17 C 1.53197 * 109.31349 * 61.36900 * 16 5 4 18 18 N 1.46920 * 109.70708 * 120.35344 * 2 1 3 19 19 C 1.36935 * 120.63523 * 246.22878 * 18 2 1 20 20 H 1.08001 * 120.00070 * 323.35615 * 19 18 2 21 21 C 1.38811 * 120.00111 * 143.34876 * 19 18 2 22 22 N 1.31619 * 120.00025 * 347.86957 * 21 19 18 23 23 Si 1.86802 * 120.00037 * 167.86677 * 21 19 18 24 24 H 1.48503 * 109.47049 * 60.00343 * 23 21 19 25 25 H 1.48504 * 109.47387 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47297 * 300.00145 * 23 21 19 27 27 H 1.08997 * 109.47000 * 180.28280 * 1 2 3 28 28 H 1.08998 * 109.47096 * 300.28439 * 1 2 3 29 29 H 1.08999 * 109.47095 * 60.28774 * 1 2 3 30 30 H 1.09001 * 109.49687 * 174.75092 * 4 2 1 31 31 H 1.09000 * 109.49622 * 54.65458 * 4 2 1 32 32 H 0.97010 * 120.00186 * 24.99709 * 7 5 4 33 33 H 1.08004 * 126.81186 * 0.02562 * 11 10 8 34 34 H 1.08997 * 109.47479 * 90.50760 * 15 14 13 35 35 H 1.08994 * 109.47648 * 210.50910 * 15 14 13 36 36 H 1.09007 * 109.46955 * 330.51045 * 15 14 13 37 37 H 1.08999 * 109.50052 * 181.32016 * 16 5 4 38 38 H 1.09003 * 109.49966 * 301.41742 * 16 5 4 39 39 H 1.09001 * 109.58903 * 185.57660 * 17 16 5 40 40 H 1.08996 * 109.70038 * 65.21857 * 17 16 5 41 41 H 0.97003 * 119.99775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 1.6445 -2.2033 -1.1712 6 1 0.5599 -2.2830 -1.0989 7 7 2.1054 -2.8956 -2.3772 8 6 1.4800 -4.0149 -2.7924 9 8 0.4860 -4.4071 -2.2116 10 6 2.0000 -4.7630 -3.9490 11 6 3.1559 -4.5175 -4.6423 12 7 3.2216 -5.4402 -5.6023 13 7 2.1948 -6.2094 -5.5272 14 7 1.4295 -5.8509 -4.5563 15 6 0.1712 -6.4931 -4.1684 16 6 2.2859 -2.8448 0.0613 17 6 1.7751 -2.1410 1.3226 18 7 2.0254 -0.6989 1.1936 19 6 2.7078 -0.0195 2.1671 20 1 3.3853 0.7768 1.8961 21 6 2.5288 -0.3541 3.5023 22 7 1.5403 -1.1483 3.8549 23 14 3.6909 0.3228 4.7988 24 1 3.6323 1.8067 4.7898 25 1 3.2871 -0.1798 6.1365 26 1 5.0767 -0.1196 4.5008 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5093 -0.8925 30 1 3.1295 -0.6465 -1.2935 31 1 1.6055 -0.2774 -2.1370 32 1 2.8608 -2.5483 -2.8771 33 1 3.8722 -3.7327 -4.4489 34 1 0.3719 -7.2696 -3.4303 35 1 -0.4995 -5.7488 -3.7394 36 1 -0.2952 -6.9390 -5.0470 37 1 2.0204 -3.9012 0.1014 38 1 3.3696 -2.7436 0.0019 39 1 2.3022 -2.5268 2.1952 40 1 0.7054 -2.3177 1.4342 41 1 1.4150 -1.3818 4.7881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947265388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:31 Heat of formation + Delta-G solvation = 80.211230 kcal Electronic energy + Delta-G solvation = -23979.701085 eV Core-core repulsion = 20511.464273 eV Total energy + Delta-G solvation = -3468.236812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49050 -39.81767 -37.81577 -35.14589 -34.42440 -32.71772 -31.79019 -30.72820 -29.50656 -28.26274 -26.97664 -24.76665 -23.89581 -22.75864 -21.99669 -21.45199 -20.55211 -18.84114 -17.94580 -17.01031 -16.94544 -16.63131 -15.99919 -15.04459 -14.73654 -14.57080 -14.23817 -13.82763 -13.81605 -13.57315 -13.24951 -13.16700 -12.73314 -12.59500 -12.28280 -12.24520 -11.45547 -11.37420 -11.13185 -11.00439 -10.87133 -10.68430 -10.45550 -10.44415 -10.27628 -10.24450 -9.97825 -9.84933 -9.71747 -9.45418 -8.87805 -8.49345 -6.61114 -5.84036 -3.36578 0.74934 1.89080 2.09486 2.97060 3.06219 3.34884 3.40923 3.41381 4.10697 4.31043 4.43879 4.52484 4.77595 4.81123 5.14312 5.17773 5.30798 5.35571 5.39032 5.49664 5.67437 5.71549 5.93637 5.99611 6.12422 6.13740 6.24413 6.31310 6.37350 6.51897 6.57153 6.69517 6.73845 6.90998 7.12375 7.26924 7.39261 7.58361 7.77186 7.99423 8.12945 8.46467 9.17694 9.77612 10.39508 11.23913 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003451 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.167756 B = 8111.720135 C = 8156.681376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.091 0.909 7 N -0.704 5.704 8 C 0.591 3.409 9 O -0.535 6.535 10 C -0.065 4.065 11 C -0.001 4.001 12 N -0.275 5.275 13 N -0.065 5.065 14 N -0.256 5.256 15 C 0.078 3.922 16 C -0.148 4.148 17 C 0.179 3.821 18 N -0.582 5.582 19 C -0.263 4.263 20 H 0.061 0.939 21 C 0.014 3.986 22 N -0.897 5.897 23 Si 0.902 3.098 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.283 1.283 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -5.541 -14.832 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.108 0.892 7 N -0.353 5.353 8 C 0.374 3.626 9 O -0.412 6.412 10 C -0.199 4.199 11 C -0.162 4.162 12 N -0.137 5.137 13 N -0.046 5.046 14 N -0.052 5.052 15 C -0.063 4.063 16 C -0.189 4.189 17 C 0.052 3.948 18 N -0.304 5.304 19 C -0.392 4.392 20 H 0.079 0.921 21 C -0.186 4.186 22 N -0.539 5.539 23 Si 0.731 3.269 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.233 0.767 33 H 0.215 0.785 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.405 -6.905 -15.330 16.872 hybrid contribution 0.678 1.051 1.417 1.890 sum -0.726 -5.854 -13.913 15.112 Atomic orbital electron populations 1.22293 0.98666 1.01065 1.00095 1.20464 0.91757 0.95204 0.86362 0.91484 1.22334 1.01385 0.93676 0.99943 1.21240 1.00165 0.91509 0.82269 0.89154 1.46081 1.34533 1.25603 1.29125 1.16703 0.83417 0.80979 0.81493 1.90817 1.25148 1.68116 1.57110 1.22151 0.98731 0.96240 1.02800 1.23899 0.97182 1.01164 0.93971 1.74882 1.14254 1.04186 1.20420 1.78263 0.99088 1.20554 1.06687 1.47645 1.18521 1.19362 1.19704 1.22547 0.80602 1.00255 1.02897 1.22609 1.00408 0.99057 0.96789 1.20639 0.97727 0.83241 0.93164 1.44032 1.63758 1.03013 1.19587 1.19025 1.17806 1.17038 0.85370 0.92099 1.25291 0.96561 0.99230 0.97560 1.69985 1.29074 1.38283 1.16553 0.86408 0.80739 0.78855 0.80897 1.20761 1.21633 1.20886 0.93290 0.92514 0.94552 0.91665 0.92389 0.76688 0.78480 0.88507 0.86631 0.88025 0.92979 0.92375 0.90401 0.95759 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.03 37.16 0.34 -2.62 16 2 C 0.17 3.24 3.28 -67.60 -0.22 3.02 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.01 5.02 -26.61 -0.13 -2.15 16 5 C 0.15 2.34 2.25 -67.90 -0.15 2.18 16 6 H 0.09 1.58 5.89 -51.93 -0.31 1.27 16 7 N -0.70 -8.68 5.06 -54.91 -0.28 -8.96 16 8 C 0.59 7.93 7.76 -12.61 -0.10 7.84 16 9 O -0.54 -8.67 14.58 5.26 0.08 -8.60 16 10 C -0.06 -0.77 6.98 -82.33 -0.57 -1.35 16 11 C 0.00 -0.02 11.54 -17.35 -0.20 -0.22 16 12 N -0.27 -3.62 12.35 30.47 0.38 -3.24 16 13 N -0.06 -0.85 13.14 60.35 0.79 -0.06 16 14 N -0.26 -2.99 3.79 -64.12 -0.24 -3.23 16 15 C 0.08 0.64 10.85 59.85 0.65 1.29 16 16 C -0.15 -2.70 5.65 -26.61 -0.15 -2.85 16 17 C 0.18 4.04 4.83 -3.71 -0.02 4.02 16 18 N -0.58 -13.52 2.66 -164.77 -0.44 -13.95 16 19 C -0.26 -6.83 9.50 -15.06 -0.14 -6.97 16 20 H 0.06 1.56 7.86 -52.49 -0.41 1.15 16 21 C 0.01 0.37 4.98 -17.43 -0.09 0.28 16 22 N -0.90 -25.20 11.56 55.49 0.64 -24.56 16 23 Si 0.90 20.97 29.57 -169.99 -5.03 15.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.05 0.92 5.75 -51.93 -0.30 0.62 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.70 7.67 -40.82 -0.31 3.38 16 33 H 0.20 1.37 7.59 -52.48 -0.40 0.98 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 1.03 6.61 -51.93 -0.34 0.69 16 36 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.99 6.58 -51.93 -0.34 1.65 16 40 H 0.02 0.59 7.50 -51.93 -0.39 0.20 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -31.40 332.53 -5.61 -37.01 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.73 Total: 2.15 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.79 Total: 2.49 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.85 Total: -54.00 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.40 -5.61 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.219 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds