Wall clock time and date at job start Tue Mar 31 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58320 * 2 1 4 4 C 1.53196 * 109.58772 * 239.71705 * 2 1 3 5 5 C 1.53035 * 109.30953 * 294.70471 * 4 2 1 6 6 H 1.09000 * 109.46360 * 58.64404 * 5 4 2 7 7 N 1.46499 * 109.45850 * 178.61377 * 5 4 2 8 8 C 1.34776 * 120.00576 * 204.99852 * 7 5 4 9 9 O 1.21622 * 119.99562 * 4.27611 * 8 7 5 10 10 C 1.47228 * 120.00518 * 184.27822 * 8 7 5 11 11 C 1.37004 * 127.19189 * 5.47153 * 10 8 7 12 12 N 1.33316 * 106.37871 * 179.97438 * 11 10 8 13 13 N 1.28515 * 109.43645 * 359.97438 * 12 11 10 14 14 N 1.28713 * 110.63945 * 0.02562 * 13 12 11 15 15 C 1.46499 * 126.04047 * 180.02562 * 14 13 12 16 16 C 1.53035 * 109.53926 * 298.63127 * 5 4 2 17 17 C 1.53197 * 109.31349 * 61.36900 * 16 5 4 18 18 N 1.46920 * 109.70708 * 120.35344 * 2 1 3 19 19 C 1.36935 * 120.63523 * 246.22878 * 18 2 1 20 20 H 1.08001 * 120.00070 * 323.35615 * 19 18 2 21 21 C 1.38811 * 120.00111 * 143.34876 * 19 18 2 22 22 N 1.31619 * 120.00025 * 347.86957 * 21 19 18 23 23 Si 1.86802 * 120.00037 * 167.86677 * 21 19 18 24 24 H 1.48503 * 109.47049 * 60.00343 * 23 21 19 25 25 H 1.48504 * 109.47387 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47297 * 300.00145 * 23 21 19 27 27 H 1.08997 * 109.47000 * 180.28280 * 1 2 3 28 28 H 1.08998 * 109.47096 * 300.28439 * 1 2 3 29 29 H 1.08999 * 109.47095 * 60.28774 * 1 2 3 30 30 H 1.09001 * 109.49687 * 174.75092 * 4 2 1 31 31 H 1.09000 * 109.49622 * 54.65458 * 4 2 1 32 32 H 0.97010 * 120.00186 * 24.99709 * 7 5 4 33 33 H 1.08004 * 126.81186 * 0.02562 * 11 10 8 34 34 H 1.08997 * 109.47479 * 90.50760 * 15 14 13 35 35 H 1.08994 * 109.47648 * 210.50910 * 15 14 13 36 36 H 1.09007 * 109.46955 * 330.51045 * 15 14 13 37 37 H 1.08999 * 109.50052 * 181.32016 * 16 5 4 38 38 H 1.09003 * 109.49966 * 301.41742 * 16 5 4 39 39 H 1.09001 * 109.58903 * 185.57660 * 17 16 5 40 40 H 1.08996 * 109.70038 * 65.21857 * 17 16 5 41 41 H 0.97003 * 119.99775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2464 5 6 1.6445 -2.2033 -1.1712 6 1 0.5599 -2.2830 -1.0989 7 7 2.1054 -2.8956 -2.3772 8 6 1.4800 -4.0149 -2.7924 9 8 0.4860 -4.4071 -2.2116 10 6 2.0000 -4.7630 -3.9490 11 6 3.1559 -4.5175 -4.6423 12 7 3.2216 -5.4402 -5.6023 13 7 2.1948 -6.2094 -5.5272 14 7 1.4295 -5.8509 -4.5563 15 6 0.1712 -6.4931 -4.1684 16 6 2.2859 -2.8448 0.0613 17 6 1.7751 -2.1410 1.3226 18 7 2.0254 -0.6989 1.1936 19 6 2.7078 -0.0195 2.1671 20 1 3.3853 0.7768 1.8961 21 6 2.5288 -0.3541 3.5023 22 7 1.5403 -1.1483 3.8549 23 14 3.6909 0.3228 4.7988 24 1 3.6323 1.8067 4.7898 25 1 3.2871 -0.1798 6.1365 26 1 5.0767 -0.1196 4.5008 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5093 -0.8925 30 1 3.1295 -0.6465 -1.2935 31 1 1.6055 -0.2774 -2.1370 32 1 2.8608 -2.5483 -2.8771 33 1 3.8722 -3.7327 -4.4489 34 1 0.3719 -7.2696 -3.4303 35 1 -0.4995 -5.7488 -3.7394 36 1 -0.2952 -6.9390 -5.0470 37 1 2.0204 -3.9012 0.1014 38 1 3.3696 -2.7436 0.0019 39 1 2.3022 -2.5268 2.1952 40 1 0.7054 -2.3177 1.4342 41 1 1.4150 -1.3818 4.7881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947265388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:31 Heat of formation + Delta-G solvation = 57.961695 kcal Electronic energy + Delta-G solvation = -23980.665897 eV Core-core repulsion = 20511.464273 eV Total energy + Delta-G solvation = -3469.201624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.38379 -41.00518 -39.26425 -36.28799 -35.52598 -34.35817 -32.99062 -32.25107 -31.04023 -29.06076 -28.47308 -26.28972 -25.20082 -23.87004 -23.54143 -22.68600 -21.63646 -20.20565 -19.25690 -18.40111 -17.89227 -17.75788 -17.30489 -16.63056 -15.96179 -15.86602 -15.49400 -15.39807 -15.09200 -14.71005 -14.30240 -14.26980 -14.13688 -13.92472 -13.81543 -13.21630 -13.08114 -12.91131 -12.63164 -12.55539 -12.29370 -12.23045 -12.09689 -11.99768 -11.74936 -11.50390 -11.32936 -11.24702 -10.97870 -10.65362 -10.53017 -10.06196 -8.52731 -7.84064 -5.39052 -0.16837 1.06209 1.19123 1.49403 1.50656 1.57049 1.95973 2.05600 2.52813 3.27587 3.33169 3.41407 3.67576 3.71503 3.86689 4.02435 4.10164 4.20365 4.32164 4.48233 4.52126 4.56438 4.61855 4.74930 4.78399 4.88699 4.90104 4.93765 5.11730 5.15208 5.21075 5.29244 5.38132 5.45437 5.46301 5.56543 5.71493 5.78752 6.38184 6.48209 7.00850 7.20942 7.22076 7.89330 8.45471 9.21224 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003451 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.167756 B = 8111.720135 C = 8156.681376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.072 0.928 7 N -0.688 5.688 8 C 0.596 3.404 9 O -0.566 6.566 10 C -0.079 4.079 11 C 0.015 3.985 12 N -0.301 5.301 13 N -0.079 5.079 14 N -0.254 5.254 15 C 0.071 3.929 16 C -0.134 4.134 17 C 0.189 3.811 18 N -0.598 5.598 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.041 4.041 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.276 1.276 27 H 0.036 0.964 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.418 0.582 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.039 0.961 40 H -0.005 1.005 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -4.814 -17.112 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.086 0.914 4 C -0.159 4.159 5 C 0.060 3.940 6 H 0.091 0.909 7 N -0.339 5.339 8 C 0.380 3.620 9 O -0.445 6.445 10 C -0.213 4.213 11 C -0.146 4.146 12 N -0.162 5.162 13 N -0.060 5.060 14 N -0.051 5.051 15 C -0.069 4.069 16 C -0.174 4.174 17 C 0.063 3.937 18 N -0.320 5.320 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.238 4.238 22 N -0.577 5.577 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.226 1.226 26 H -0.202 1.202 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.173 -6.165 -17.675 18.720 hybrid contribution 0.255 0.816 2.084 2.253 sum 0.081 -5.349 -15.591 16.483 Atomic orbital electron populations 1.22180 0.98287 1.00349 1.00382 1.20712 0.92078 0.95529 0.86316 0.91368 1.22160 1.02262 0.92503 0.98944 1.20826 0.98865 0.92020 0.82251 0.90943 1.45700 1.35017 1.25155 1.28073 1.16811 0.82846 0.80840 0.81463 1.90816 1.26629 1.68886 1.58192 1.22008 0.99519 0.96880 1.02922 1.24522 0.96931 1.00870 0.92306 1.74877 1.14689 1.05088 1.21588 1.78235 0.99526 1.20981 1.07214 1.47942 1.18921 1.19145 1.19091 1.22786 0.79548 1.00192 1.04357 1.22359 1.00661 0.98364 0.96022 1.20321 0.95507 0.83841 0.94059 1.44245 1.64100 1.03294 1.20394 1.19392 1.17534 1.16517 0.86128 0.91590 1.26002 0.98065 1.00112 0.99574 1.70150 1.31055 1.40231 1.16232 0.85435 0.79024 0.78407 0.78079 1.19983 1.22555 1.20218 0.94465 0.95630 0.90777 0.90378 0.88795 0.74361 0.74813 0.87611 0.87342 0.85481 0.93424 0.91703 0.94227 0.98718 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.03 71.98 0.65 -4.80 16 2 C 0.16 5.85 3.28 44.98 0.15 6.00 16 3 H 0.07 2.47 7.93 -2.39 -0.02 2.45 16 4 C -0.12 -3.18 5.02 30.67 0.15 -3.02 16 5 C 0.16 4.75 2.25 45.01 0.10 4.85 16 6 H 0.07 2.44 5.89 -2.39 -0.01 2.42 16 7 N -0.69 -14.78 5.06 -445.89 -2.26 -17.03 16 8 C 0.60 14.71 7.76 86.61 0.67 15.38 16 9 O -0.57 -17.80 14.58 -4.10 -0.06 -17.86 16 10 C -0.08 -1.70 6.98 40.40 0.28 -1.42 16 11 C 0.01 0.28 11.54 84.18 0.97 1.25 16 12 N -0.30 -7.25 12.35 -57.50 -0.71 -7.96 16 13 N -0.08 -1.92 13.14 37.02 0.49 -1.44 16 14 N -0.25 -5.48 3.79 -356.78 -1.35 -6.83 16 15 C 0.07 1.07 10.85 127.77 1.39 2.45 16 16 C -0.13 -4.78 5.65 30.67 0.17 -4.61 16 17 C 0.19 8.83 4.83 86.36 0.42 9.24 16 18 N -0.60 -27.86 2.66 -675.22 -1.79 -29.65 16 19 C -0.27 -13.85 9.50 84.03 0.80 -13.05 16 20 H 0.07 3.32 7.86 -2.91 -0.02 3.30 16 21 C -0.04 -2.23 4.98 84.86 0.42 -1.81 16 22 N -0.93 -54.46 11.56 21.65 0.25 -54.21 16 23 Si 0.96 43.68 29.57 68.60 2.03 45.71 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H 0.04 1.40 5.75 -2.39 -0.01 1.38 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.42 5.84 7.67 -92.70 -0.71 5.13 16 33 H 0.24 2.17 7.59 -2.91 -0.02 2.15 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.84 6.61 -2.39 -0.02 1.82 16 36 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 2.12 6.58 -2.39 -0.02 2.10 16 40 H -0.01 -0.27 7.50 -2.39 -0.02 -0.29 16 41 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -70.48 332.53 3.11 -67.37 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.34 Total: 11.43 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 6.18 Total: 10.47 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.38 Total: -117.12 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.06 Total: -17.86 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.48 3.11 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947265388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.333 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds