Wall clock time and date at job start Tue Mar 31 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09001 * 109.46284 * 301.21051 * 5 4 2 7 7 N 1.46509 * 109.45726 * 181.25630 * 5 4 2 8 8 C 1.34774 * 119.99718 * 154.93248 * 7 5 4 9 9 O 1.21560 * 120.00146 * 359.97438 * 8 7 5 10 10 C 1.47870 * 120.00098 * 180.02562 * 8 7 5 11 11 N 1.34554 * 126.04560 * 359.68372 * 10 8 7 12 12 C 1.30868 * 107.26880 * 179.89705 * 11 10 8 13 13 N 1.34586 * 107.62403 * 0.36530 * 12 11 10 14 14 C 1.46502 * 125.74768 * 179.80262 * 13 12 11 15 15 N 1.28845 * 108.50287 * 359.76870 * 13 12 11 16 16 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 17 17 C 1.53193 * 109.30963 * 298.63474 * 16 5 4 18 18 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 19 19 C 1.36942 * 120.62997 * 353.41990 * 18 2 1 20 20 H 1.07996 * 119.99665 * 29.58632 * 19 18 2 21 21 C 1.38808 * 119.99877 * 209.58916 * 19 18 2 22 22 N 1.31618 * 120.00552 * 15.52077 * 21 19 18 23 23 Si 1.86804 * 119.99669 * 195.52646 * 21 19 18 24 24 H 1.48498 * 109.47155 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.46909 * 300.00011 * 23 21 19 26 26 H 1.48501 * 109.47361 * 59.99417 * 23 21 19 27 27 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 28 28 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 29 29 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 30 30 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 31 31 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 32 32 H 0.96997 * 120.00491 * 334.93339 * 7 5 4 33 33 H 1.07997 * 126.18815 * 180.13157 * 12 11 10 34 34 H 1.09001 * 109.46895 * 269.98810 * 14 13 12 35 35 H 1.09005 * 109.47285 * 29.98154 * 14 13 12 36 36 H 1.08997 * 109.47495 * 149.98992 * 14 13 12 37 37 H 1.08996 * 109.49796 * 178.68040 * 16 5 4 38 38 H 1.09000 * 109.52406 * 58.60257 * 16 5 4 39 39 H 1.08998 * 109.58588 * 294.84653 * 17 16 5 40 40 H 1.08997 * 109.70252 * 174.49039 * 17 16 5 41 41 H 0.96996 * 120.00275 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0058 0.1477 -1.0996 7 7 4.0578 -1.5119 -2.3805 8 6 5.3217 -1.3001 -2.7977 9 8 6.0517 -0.5561 -2.1721 10 6 5.8202 -1.9717 -4.0171 11 7 5.1226 -2.8188 -4.7958 12 6 5.9130 -3.1911 -5.7701 13 7 7.0989 -2.5812 -5.5885 14 6 8.2750 -2.7226 -6.4505 15 7 7.0254 -1.8514 -4.5292 16 6 3.9524 -1.6685 0.0581 17 6 3.4644 -0.9518 1.3211 18 7 2.0225 -0.6995 1.1944 19 6 1.1536 -1.1135 2.1685 20 1 0.1387 -1.3771 1.9102 21 6 1.5774 -1.1943 3.4879 22 7 2.6899 -0.5972 3.8596 23 14 0.5687 -2.1506 4.7359 24 1 1.2311 -2.0838 6.0633 25 1 -0.7904 -1.5597 4.8311 26 1 0.4631 -3.5679 4.3055 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3634 -1.0276 -0.0064 30 1 1.7632 -0.1564 -2.1349 31 1 1.5964 -1.7169 -1.2937 32 1 3.4753 -2.1053 -2.8800 33 1 5.6607 -3.8685 -6.5725 34 1 8.8879 -3.5513 -6.0958 35 1 7.9542 -2.9199 -7.4734 36 1 8.8580 -1.8020 -6.4237 37 1 5.0363 -1.7760 0.0965 38 1 3.4910 -2.6543 -0.0021 39 1 3.9928 -0.0049 1.4310 40 1 3.6506 -1.5776 2.1938 41 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947277084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:45 Heat of formation + Delta-G solvation = 54.902914 kcal Electronic energy + Delta-G solvation = -23581.292915 eV Core-core repulsion = 20111.958653 eV Total energy + Delta-G solvation = -3469.334262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.44007 -40.95573 -39.23022 -36.19486 -35.52840 -34.21256 -32.98585 -32.78268 -31.37311 -28.81442 -27.88142 -26.71347 -25.15298 -23.76739 -23.18554 -22.27024 -21.49081 -20.93624 -19.22037 -18.22901 -17.76789 -17.40371 -17.32065 -16.92309 -15.97978 -15.92445 -15.68941 -15.47898 -15.11814 -14.82421 -14.56325 -14.38330 -13.96540 -13.89730 -13.31830 -12.95120 -12.85132 -12.71354 -12.67034 -12.60578 -12.35712 -12.11291 -11.88007 -11.71189 -11.55442 -11.53480 -11.51322 -11.44867 -11.10438 -10.61450 -10.52037 -10.07426 -8.62470 -7.81628 -5.28315 0.29090 1.12985 1.29908 1.49188 1.51829 1.58073 2.05538 2.24316 2.54895 3.09111 3.34462 3.48960 3.62027 3.83206 3.92031 4.04584 4.27230 4.35609 4.38868 4.41958 4.62638 4.70014 4.71431 4.76123 4.79190 4.84483 4.96592 5.06989 5.08650 5.16581 5.31828 5.39101 5.42857 5.53355 5.57928 5.67334 5.72181 5.75227 6.37621 6.45510 6.95674 7.11302 7.19089 7.90731 8.44442 9.26152 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031196 B = 0.003227 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.348935 B = 8675.733438 C = 8970.559336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.013 0.987 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.062 0.938 7 N -0.686 5.686 8 C 0.607 3.393 9 O -0.566 6.566 10 C 0.119 3.881 11 N -0.508 5.508 12 C 0.208 3.792 13 N -0.301 5.301 14 C 0.074 3.926 15 N -0.287 5.287 16 C -0.132 4.132 17 C 0.185 3.815 18 N -0.603 5.603 19 C -0.250 4.250 20 H 0.081 0.919 21 C -0.057 4.057 22 N -0.941 5.941 23 Si 0.965 3.035 24 H -0.300 1.300 25 H -0.273 1.273 26 H -0.278 1.278 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.418 0.582 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.062 0.938 39 H -0.010 1.010 40 H 0.055 0.945 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.638 -7.929 -26.318 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.080 0.920 7 N -0.337 5.337 8 C 0.390 3.610 9 O -0.442 6.442 10 C -0.160 4.160 11 N -0.234 5.234 12 C -0.086 4.086 13 N -0.096 5.096 14 C -0.064 4.064 15 N -0.129 5.129 16 C -0.172 4.172 17 C 0.058 3.942 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.098 0.902 21 C -0.251 4.251 22 N -0.588 5.588 23 Si 0.794 3.206 24 H -0.227 1.227 25 H -0.198 1.198 26 H -0.204 1.204 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.256 0.744 33 H 0.299 0.701 34 H 0.124 0.876 35 H 0.165 0.835 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.008 0.992 40 H 0.074 0.926 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.366 -7.073 -25.383 27.108 hybrid contribution -0.036 -0.536 0.949 1.091 sum 6.330 -7.609 -24.434 26.363 Atomic orbital electron populations 1.21708 0.93663 1.01788 1.01208 1.20548 0.94868 0.92953 0.86229 0.96926 1.22135 0.91855 1.02554 0.99156 1.20822 0.95491 0.95303 0.82591 0.91994 1.45741 1.12038 1.48173 1.27775 1.16703 0.82399 0.80180 0.81699 1.90807 1.57381 1.38785 1.57272 1.23371 0.89524 1.02858 1.00213 1.71208 1.32599 1.13854 1.05727 1.27555 0.81364 0.99489 1.00239 1.47835 1.14908 1.29502 1.17356 1.22777 0.83758 1.05857 0.94048 1.74266 1.21241 1.16060 1.01292 1.22337 0.99067 0.99691 0.96113 1.20424 0.83812 0.95502 0.94433 1.44402 1.02614 1.65565 1.20074 1.19522 0.95608 1.36343 0.86532 0.90156 1.25897 0.99163 1.01038 0.99049 1.70195 1.26041 1.45929 1.16624 0.85372 0.78333 0.79079 0.77863 1.22696 1.19837 1.20356 0.94033 0.90394 0.92535 0.89092 0.90457 0.74412 0.70053 0.87582 0.83513 0.88676 0.93801 0.91878 0.99221 0.92615 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.94 71.98 0.57 -3.88 16 2 C 0.16 6.56 3.48 44.83 0.16 6.72 16 3 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.12 -3.88 4.81 30.53 0.15 -3.73 16 5 C 0.16 6.03 2.42 45.02 0.11 6.14 16 6 H 0.06 2.62 7.57 -2.39 -0.02 2.60 16 7 N -0.69 -22.09 5.07 -445.23 -2.26 -24.35 16 8 C 0.61 22.13 7.80 86.79 0.68 22.81 16 9 O -0.57 -25.39 16.75 -3.90 -0.07 -25.45 16 10 C 0.12 3.63 7.96 137.13 1.09 4.72 16 11 N -0.51 -11.71 11.09 -193.03 -2.14 -13.85 16 12 C 0.21 2.63 12.62 180.30 2.27 4.90 16 13 N -0.30 -4.59 3.72 -373.45 -1.39 -5.98 16 14 C 0.07 0.21 11.38 127.77 1.45 1.66 16 15 N -0.29 -8.00 12.08 -52.44 -0.63 -8.63 16 16 C -0.13 -5.66 5.65 30.67 0.17 -5.49 16 17 C 0.19 9.64 5.29 86.36 0.46 10.09 16 18 N -0.60 -30.60 2.99 -676.05 -2.02 -32.62 16 19 C -0.25 -13.58 8.57 84.03 0.72 -12.86 16 20 H 0.08 4.12 6.23 -2.91 -0.02 4.10 16 21 C -0.06 -3.23 4.94 84.86 0.42 -2.81 16 22 N -0.94 -57.81 11.23 21.65 0.24 -57.57 16 23 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H 0.04 1.63 7.62 -2.39 -0.02 1.61 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.42 11.24 8.31 -92.71 -0.77 10.47 16 33 H 0.28 -0.29 8.06 -2.91 -0.02 -0.32 16 34 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.15 -0.89 8.14 -2.38 -0.02 -0.91 16 36 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.06 3.25 6.14 -2.39 -0.01 3.23 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -83.61 337.80 2.29 -81.33 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.27 Total: 11.25 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 8.25 Total: 28.27 kcal Atomic # 7 Polarization: -134.80 SS G_CDS: -8.20 Total: -143.01 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -83.61 2.29 -81.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.232 kcal (2) G-P(sol) polarization free energy of solvation -83.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds