Wall clock time and date at job start Tue Mar 31 2020 03:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70098 * 2 1 4 4 C 1.53193 * 109.58954 * 239.64294 * 2 1 3 5 5 C 1.53045 * 109.31032 * 294.84788 * 4 2 1 6 6 H 1.08989 * 109.46027 * 58.63739 * 5 4 2 7 7 N 1.46504 * 109.45732 * 178.61381 * 5 4 2 8 8 C 1.34769 * 119.99816 * 204.99688 * 7 5 4 9 9 O 1.21559 * 120.00210 * 0.02562 * 8 7 5 10 10 C 1.47868 * 120.00311 * 179.97438 * 8 7 5 11 11 N 1.34556 * 126.04565 * 0.02562 * 10 8 7 12 12 C 1.30867 * 107.27013 * 179.97438 * 11 10 8 13 13 N 1.34589 * 107.62565 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.74922 * 180.02562 * 13 12 11 15 15 N 1.28845 * 108.50140 * 0.02562 * 13 12 11 16 16 C 1.53040 * 109.53667 * 298.63244 * 5 4 2 17 17 C 1.53191 * 109.31562 * 61.36425 * 16 5 4 18 18 N 1.46924 * 108.77449 * 305.36873 * 17 16 5 19 19 C 1.36937 * 120.62846 * 233.57815 * 18 17 16 20 20 H 1.08003 * 120.00008 * 151.83664 * 19 18 17 21 21 C 1.38809 * 120.00171 * 331.85082 * 19 18 17 22 22 N 1.31617 * 120.00162 * 343.06672 * 21 19 18 23 23 Si 1.86799 * 120.00349 * 163.07166 * 21 19 18 24 24 H 1.48508 * 109.47194 * 59.99576 * 23 21 19 25 25 H 1.48495 * 109.47384 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46970 * 299.99933 * 23 21 19 27 27 H 1.09008 * 109.46998 * 180.35881 * 1 2 3 28 28 H 1.09001 * 109.47275 * 300.35234 * 1 2 3 29 29 H 1.08997 * 109.47145 * 60.36009 * 1 2 3 30 30 H 1.08996 * 109.50070 * 174.89282 * 4 2 1 31 31 H 1.08996 * 109.49535 * 54.79683 * 4 2 1 32 32 H 0.96997 * 120.00013 * 24.99825 * 7 5 4 33 33 H 1.08002 * 126.18730 * 180.02562 * 12 11 10 34 34 H 1.08992 * 109.47157 * 89.99886 * 14 13 12 35 35 H 1.09001 * 109.46886 * 210.00196 * 14 13 12 36 36 H 1.09006 * 109.47166 * 329.99862 * 14 13 12 37 37 H 1.08994 * 109.50017 * 181.32158 * 16 5 4 38 38 H 1.09003 * 109.50056 * 301.41548 * 16 5 4 39 39 H 1.08993 * 109.58846 * 185.57756 * 17 16 5 40 40 H 1.09000 * 109.70106 * 65.22008 * 17 16 5 41 41 H 0.96998 * 120.00879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2042 -1.1700 6 1 0.5567 -2.2815 -1.0989 7 7 2.1024 -2.8979 -2.3753 8 6 1.4752 -4.0161 -2.7906 9 8 0.5268 -4.4488 -2.1654 10 6 1.9400 -4.7160 -4.0073 11 7 2.9713 -4.3461 -4.7884 12 6 3.0582 -5.2212 -5.7575 13 7 2.0818 -6.1295 -5.5752 14 6 1.8181 -7.2867 -6.4339 15 7 1.4182 -5.8097 -4.5181 16 6 2.2801 -2.8464 0.0636 17 6 1.7693 -2.1409 1.3239 18 7 2.0226 -0.6995 1.1945 19 6 2.7043 -0.0207 2.1690 20 1 3.2759 0.8597 1.9147 21 6 2.6611 -0.4643 3.4836 22 7 1.7269 -1.3107 3.8621 23 14 3.9285 0.1400 4.7155 24 1 3.8399 1.6178 4.8325 25 1 3.6651 -0.4775 6.0401 26 1 5.2879 -0.2393 4.2535 27 1 -0.3633 -1.0277 0.0064 28 1 -0.3634 0.5193 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 3.1297 -0.6503 -1.2913 31 1 1.6075 -0.2785 -2.1368 32 1 2.8590 -2.5524 -2.8743 33 1 3.7825 -5.2157 -6.5587 34 1 2.3891 -8.1429 -6.0752 35 1 0.7543 -7.5228 -6.4087 36 1 2.1147 -7.0551 -7.4570 37 1 2.0125 -3.9022 0.1039 38 1 3.3640 -2.7474 0.0054 39 1 2.2945 -2.5273 2.1972 40 1 0.6990 -2.3153 1.4344 41 1 1.6964 -1.6205 4.7808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947277087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:55 Heat of formation + Delta-G solvation = 80.088271 kcal Electronic energy + Delta-G solvation = -23690.007575 eV Core-core repulsion = 20221.765432 eV Total energy + Delta-G solvation = -3468.242143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.61112 -39.52300 -37.61578 -34.85058 -34.39667 -32.45240 -31.93666 -30.77618 -29.62672 -28.04292 -26.80695 -24.65234 -23.80405 -22.57576 -21.84202 -21.40979 -20.27149 -18.71026 -17.86870 -16.99273 -16.88496 -16.24068 -16.05571 -15.14445 -14.62619 -14.61782 -14.01163 -13.74281 -13.66051 -13.59452 -13.43560 -12.99250 -12.54678 -12.41974 -12.15545 -12.13538 -11.34335 -11.01357 -10.87335 -10.73388 -10.66046 -10.64602 -10.56256 -10.28073 -10.14811 -10.09589 -9.83652 -9.74746 -9.65165 -9.31205 -8.64995 -8.34512 -6.62335 -5.72639 -3.15376 1.28432 1.95711 1.96623 3.18473 3.42678 3.47915 3.48594 3.49521 3.96139 4.11335 4.53880 4.55234 4.56554 4.81713 4.89907 5.35772 5.45896 5.46288 5.67629 5.78809 5.87585 6.08080 6.10299 6.15091 6.22808 6.33787 6.37984 6.50186 6.53904 6.66659 6.72880 6.86768 6.95106 7.01949 7.22741 7.45819 7.61957 7.76726 7.85566 7.93512 8.39679 8.51870 9.27327 9.90859 10.47931 11.35619 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.003258 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.818455 B = 8593.313379 C = 8768.279084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.088 0.912 7 N -0.701 5.701 8 C 0.609 3.391 9 O -0.519 6.519 10 C 0.149 3.851 11 N -0.485 5.485 12 C 0.188 3.812 13 N -0.309 5.309 14 C 0.086 3.914 15 N -0.255 5.255 16 C -0.148 4.148 17 C 0.174 3.826 18 N -0.585 5.585 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.404 0.596 33 H 0.226 0.774 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.022 0.978 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -8.905 -22.569 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.106 0.894 7 N -0.352 5.352 8 C 0.390 3.610 9 O -0.391 6.391 10 C -0.131 4.131 11 N -0.210 5.210 12 C -0.108 4.108 13 N -0.104 5.104 14 C -0.055 4.055 15 N -0.094 5.094 16 C -0.188 4.188 17 C 0.048 3.952 18 N -0.306 5.306 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.239 0.761 33 H 0.242 0.758 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.701 -9.320 -21.556 23.546 hybrid contribution 1.203 0.109 -0.017 1.208 sum 2.904 -9.211 -21.573 23.636 Atomic orbital electron populations 1.22307 0.98693 1.01206 1.00029 1.20441 0.91784 0.95096 0.86436 0.91572 1.22312 1.01381 0.93853 0.99672 1.21203 0.99946 0.91401 0.82663 0.89433 1.46056 1.34469 1.25781 1.28917 1.16319 0.82742 0.80803 0.81131 1.90842 1.27396 1.65522 1.55382 1.23987 0.94849 0.94362 0.99927 1.71280 1.18458 1.26529 1.04738 1.26484 0.95563 0.87873 1.00882 1.47397 1.22137 1.22029 1.18845 1.22231 1.05363 0.85007 0.92852 1.74370 1.19923 1.15754 0.99346 1.22595 1.00328 0.99228 0.96698 1.20739 0.97798 0.82875 0.93787 1.44160 1.63794 1.03448 1.19247 1.19119 1.21882 1.10597 0.86652 0.91720 1.25051 0.97657 1.00003 0.96814 1.70020 1.31701 1.35790 1.16932 0.86388 0.81631 0.78308 0.80521 1.20948 1.21724 1.21083 0.93140 0.92621 0.94473 0.91679 0.92432 0.76075 0.75805 0.89156 0.88188 0.88037 0.92831 0.92491 0.89316 0.95956 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.02 37.16 0.34 -2.86 16 2 C 0.17 3.52 3.29 -67.60 -0.22 3.29 16 3 H 0.07 1.35 7.93 -51.92 -0.41 0.94 16 4 C -0.13 -2.30 5.02 -26.61 -0.13 -2.43 16 5 C 0.15 2.78 2.21 -67.88 -0.15 2.63 16 6 H 0.09 1.77 5.94 -51.94 -0.31 1.46 16 7 N -0.70 -11.46 5.07 -54.70 -0.28 -11.74 16 8 C 0.61 10.91 7.79 -12.32 -0.10 10.82 16 9 O -0.52 -11.08 16.75 5.31 0.09 -11.00 16 10 C 0.15 2.31 7.96 -156.35 -1.24 1.06 16 11 N -0.48 -6.15 11.09 -12.36 -0.14 -6.29 16 12 C 0.19 1.56 12.62 -90.48 -1.14 0.42 16 13 N -0.31 -2.80 3.72 -69.40 -0.26 -3.06 16 14 C 0.09 0.28 11.38 59.84 0.68 0.96 16 15 N -0.26 -3.65 12.08 32.07 0.39 -3.26 16 16 C -0.15 -3.08 5.65 -26.61 -0.15 -3.23 16 17 C 0.17 4.29 4.88 -3.71 -0.02 4.27 16 18 N -0.58 -14.51 2.70 -164.78 -0.44 -14.95 16 19 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 20 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -26.37 11.20 55.49 0.62 -25.75 16 23 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.05 1.03 5.72 -51.92 -0.30 0.73 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 5.77 8.31 -40.82 -0.34 5.43 16 33 H 0.23 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 40 H 0.02 0.58 7.49 -51.93 -0.39 0.20 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -35.58 336.83 -8.18 -43.76 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.84 Total: 2.52 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.37 Total: 7.89 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.11 Total: -65.05 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.58 -8.18 -43.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.850 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds