Wall clock time and date at job start Tue Mar 31 2020 03:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70098 * 2 1 4 4 C 1.53193 * 109.58954 * 239.64294 * 2 1 3 5 5 C 1.53045 * 109.31032 * 294.84788 * 4 2 1 6 6 H 1.08989 * 109.46027 * 58.63739 * 5 4 2 7 7 N 1.46504 * 109.45732 * 178.61381 * 5 4 2 8 8 C 1.34769 * 119.99816 * 204.99688 * 7 5 4 9 9 O 1.21559 * 120.00210 * 0.02562 * 8 7 5 10 10 C 1.47868 * 120.00311 * 179.97438 * 8 7 5 11 11 N 1.34556 * 126.04565 * 0.02562 * 10 8 7 12 12 C 1.30867 * 107.27013 * 179.97438 * 11 10 8 13 13 N 1.34589 * 107.62565 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.74922 * 180.02562 * 13 12 11 15 15 N 1.28845 * 108.50140 * 0.02562 * 13 12 11 16 16 C 1.53040 * 109.53667 * 298.63244 * 5 4 2 17 17 C 1.53191 * 109.31562 * 61.36425 * 16 5 4 18 18 N 1.46924 * 108.77449 * 305.36873 * 17 16 5 19 19 C 1.36937 * 120.62846 * 233.57815 * 18 17 16 20 20 H 1.08003 * 120.00008 * 151.83664 * 19 18 17 21 21 C 1.38809 * 120.00171 * 331.85082 * 19 18 17 22 22 N 1.31617 * 120.00162 * 343.06672 * 21 19 18 23 23 Si 1.86799 * 120.00349 * 163.07166 * 21 19 18 24 24 H 1.48508 * 109.47194 * 59.99576 * 23 21 19 25 25 H 1.48495 * 109.47384 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46970 * 299.99933 * 23 21 19 27 27 H 1.09008 * 109.46998 * 180.35881 * 1 2 3 28 28 H 1.09001 * 109.47275 * 300.35234 * 1 2 3 29 29 H 1.08997 * 109.47145 * 60.36009 * 1 2 3 30 30 H 1.08996 * 109.50070 * 174.89282 * 4 2 1 31 31 H 1.08996 * 109.49535 * 54.79683 * 4 2 1 32 32 H 0.96997 * 120.00013 * 24.99825 * 7 5 4 33 33 H 1.08002 * 126.18730 * 180.02562 * 12 11 10 34 34 H 1.08992 * 109.47157 * 89.99886 * 14 13 12 35 35 H 1.09001 * 109.46886 * 210.00196 * 14 13 12 36 36 H 1.09006 * 109.47166 * 329.99862 * 14 13 12 37 37 H 1.08994 * 109.50017 * 181.32158 * 16 5 4 38 38 H 1.09003 * 109.50056 * 301.41548 * 16 5 4 39 39 H 1.08993 * 109.58846 * 185.57756 * 17 16 5 40 40 H 1.09000 * 109.70106 * 65.22008 * 17 16 5 41 41 H 0.96998 * 120.00879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2042 -1.1700 6 1 0.5567 -2.2815 -1.0989 7 7 2.1024 -2.8979 -2.3753 8 6 1.4752 -4.0161 -2.7906 9 8 0.5268 -4.4488 -2.1654 10 6 1.9400 -4.7160 -4.0073 11 7 2.9713 -4.3461 -4.7884 12 6 3.0582 -5.2212 -5.7575 13 7 2.0818 -6.1295 -5.5752 14 6 1.8181 -7.2867 -6.4339 15 7 1.4182 -5.8097 -4.5181 16 6 2.2801 -2.8464 0.0636 17 6 1.7693 -2.1409 1.3239 18 7 2.0226 -0.6995 1.1945 19 6 2.7043 -0.0207 2.1690 20 1 3.2759 0.8597 1.9147 21 6 2.6611 -0.4643 3.4836 22 7 1.7269 -1.3107 3.8621 23 14 3.9285 0.1400 4.7155 24 1 3.8399 1.6178 4.8325 25 1 3.6651 -0.4775 6.0401 26 1 5.2879 -0.2393 4.2535 27 1 -0.3633 -1.0277 0.0064 28 1 -0.3634 0.5193 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 3.1297 -0.6503 -1.2913 31 1 1.6075 -0.2785 -2.1368 32 1 2.8590 -2.5524 -2.8743 33 1 3.7825 -5.2157 -6.5587 34 1 2.3891 -8.1429 -6.0752 35 1 0.7543 -7.5228 -6.4087 36 1 2.1147 -7.0551 -7.4570 37 1 2.0125 -3.9022 0.1039 38 1 3.3640 -2.7474 0.0054 39 1 2.2945 -2.5273 2.1972 40 1 0.6990 -2.3153 1.4344 41 1 1.6964 -1.6205 4.7808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947277087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:54 Heat of formation + Delta-G solvation = 55.094303 kcal Electronic energy + Delta-G solvation = -23691.091395 eV Core-core repulsion = 20221.765432 eV Total energy + Delta-G solvation = -3469.325963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.43469 -40.99002 -39.27439 -36.11402 -35.51924 -34.28174 -32.78803 -32.49914 -31.41127 -29.00058 -28.23665 -26.26389 -25.17623 -23.74047 -23.44373 -22.69320 -21.57707 -20.20475 -19.25527 -18.47394 -17.76697 -17.49139 -17.32709 -16.67945 -16.01559 -15.95884 -15.54696 -15.48691 -15.08198 -14.69203 -14.35988 -14.16783 -13.97014 -13.94282 -13.82605 -13.13455 -12.91879 -12.84912 -12.61611 -12.55068 -12.30488 -12.05354 -12.02196 -11.79904 -11.55001 -11.50135 -11.44578 -11.42148 -11.01230 -10.61067 -10.52183 -10.05042 -8.66398 -7.83259 -5.28650 0.29780 1.13463 1.30689 1.49024 1.51745 1.58163 2.06971 2.25220 2.54142 3.10054 3.32315 3.49588 3.64590 3.81788 3.92693 4.07258 4.28984 4.35988 4.42138 4.44895 4.52968 4.70148 4.72325 4.74446 4.81731 4.86405 4.89086 5.08815 5.11622 5.18015 5.32160 5.34941 5.44317 5.45224 5.56276 5.67815 5.70531 5.77223 6.38833 6.43406 6.96446 7.12258 7.17914 7.89721 8.42629 9.23450 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.003258 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.818455 B = 8593.313379 C = 8768.279084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.069 0.931 7 N -0.687 5.687 8 C 0.607 3.393 9 O -0.566 6.566 10 C 0.119 3.881 11 N -0.508 5.508 12 C 0.208 3.792 13 N -0.301 5.301 14 C 0.074 3.926 15 N -0.287 5.287 16 C -0.134 4.134 17 C 0.186 3.814 18 N -0.599 5.599 19 C -0.259 4.259 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.278 1.278 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.418 0.582 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.054 0.946 40 H -0.007 1.007 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -8.625 -26.207 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.092 0.908 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.087 0.913 7 N -0.338 5.338 8 C 0.390 3.610 9 O -0.442 6.442 10 C -0.160 4.160 11 N -0.234 5.234 12 C -0.087 4.087 13 N -0.096 5.096 14 C -0.064 4.064 15 N -0.129 5.129 16 C -0.174 4.174 17 C 0.060 3.940 18 N -0.322 5.322 19 C -0.389 4.389 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.204 1.204 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.255 0.745 33 H 0.299 0.701 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.165 0.835 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.680 -9.025 -25.267 27.082 hybrid contribution 0.592 -0.071 0.941 1.114 sum 4.272 -9.096 -24.326 26.320 Atomic orbital electron populations 1.22195 0.98119 1.00335 1.00685 1.20703 0.92246 0.95546 0.86009 0.90815 1.22155 1.02074 0.92300 0.99180 1.20878 0.98610 0.92301 0.82443 0.91323 1.45766 1.34639 1.25388 1.28022 1.16692 0.81984 0.80635 0.81674 1.90806 1.29462 1.66749 1.57189 1.23391 0.96860 0.95513 1.00208 1.71210 1.18038 1.28382 1.05778 1.27553 0.95045 0.85762 1.00314 1.47833 1.21291 1.22941 1.17548 1.22773 1.05674 0.83842 0.94145 1.74267 1.21468 1.15793 1.01333 1.22357 1.00415 0.98308 0.96321 1.20395 0.95593 0.83718 0.94311 1.44367 1.64157 1.03517 1.20110 1.19514 1.21624 1.10480 0.87258 0.90942 1.25827 0.99474 1.00745 0.98744 1.70196 1.33637 1.37618 1.16817 0.85351 0.79335 0.78046 0.77764 1.19922 1.22546 1.20402 0.94741 0.95058 0.90641 0.90677 0.88952 0.74482 0.70077 0.87592 0.88669 0.83534 0.93888 0.92052 0.92768 0.98861 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.01 9.02 71.98 0.65 -5.36 16 2 C 0.16 6.52 3.29 44.97 0.15 6.67 16 3 H 0.07 2.87 7.93 -2.38 -0.02 2.85 16 4 C -0.12 -3.84 5.02 30.67 0.15 -3.69 16 5 C 0.16 5.93 2.21 45.02 0.10 6.03 16 6 H 0.07 2.84 5.94 -2.39 -0.01 2.83 16 7 N -0.69 -22.00 5.07 -445.25 -2.26 -24.26 16 8 C 0.61 22.02 7.79 86.79 0.68 22.69 16 9 O -0.57 -25.20 16.75 -3.90 -0.07 -25.26 16 10 C 0.12 3.62 7.96 137.13 1.09 4.71 16 11 N -0.51 -11.71 11.09 -193.03 -2.14 -13.85 16 12 C 0.21 2.63 12.62 180.30 2.27 4.90 16 13 N -0.30 -4.59 3.72 -373.47 -1.39 -5.98 16 14 C 0.07 0.21 11.38 127.77 1.45 1.66 16 15 N -0.29 -7.98 12.08 -52.44 -0.63 -8.62 16 16 C -0.13 -5.73 5.65 30.67 0.17 -5.55 16 17 C 0.19 9.62 4.88 86.36 0.42 10.04 16 18 N -0.60 -30.21 2.70 -675.24 -1.82 -32.03 16 19 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 20 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -2.99 4.92 84.86 0.42 -2.58 16 22 N -0.94 -57.17 11.20 21.65 0.24 -56.93 16 23 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H 0.03 1.43 5.72 -2.38 -0.01 1.42 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.42 11.20 8.31 -92.71 -0.77 10.43 16 33 H 0.28 -0.28 8.06 -2.91 -0.02 -0.30 16 34 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.15 -0.89 8.14 -2.38 -0.02 -0.90 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.05 3.15 6.06 -2.39 -0.01 3.14 16 40 H -0.01 -0.38 7.49 -2.39 -0.02 -0.39 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -83.03 336.83 2.60 -80.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.28 Total: 12.74 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 8.36 Total: 26.11 kcal Atomic # 7 Polarization: -133.66 SS G_CDS: -8.00 Total: -141.67 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.07 Total: -25.26 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -83.03 2.60 -80.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.525 kcal (2) G-P(sol) polarization free energy of solvation -83.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds