Wall clock time and date at job start Tue Mar 31 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33321 * 126.81362 * 2 1 4 4 N 1.28517 * 109.43977 * 180.25521 * 3 2 1 5 5 N 1.28709 * 110.63772 * 359.77005 * 4 3 2 6 6 H 0.97004 * 126.03479 * 179.97438 * 5 4 3 7 7 C 1.37007 * 126.81665 * 179.86558 * 2 1 3 8 8 C 1.47232 * 127.18463 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00408 * 359.71104 * 8 7 2 10 10 N 1.34780 * 119.99881 * 179.70886 * 8 7 2 11 11 C 1.46494 * 120.00382 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.44889 * 324.96396 * 11 10 8 13 13 C 1.53046 * 109.46306 * 84.92693 * 11 10 8 14 14 C 1.53189 * 109.31448 * 181.38905 * 13 11 10 15 15 N 1.46924 * 108.77575 * 305.36620 * 14 13 11 16 16 C 1.36936 * 120.63202 * 233.62935 * 15 14 13 17 17 H 1.08000 * 119.99984 * 150.13910 * 16 15 14 18 18 C 1.38812 * 120.00024 * 330.14668 * 16 15 14 19 19 N 1.31618 * 119.99806 * 344.50034 * 18 16 15 20 20 Si 1.86805 * 119.99880 * 164.50100 * 18 16 15 21 21 H 1.48493 * 109.47197 * 90.00044 * 20 18 16 22 22 H 1.48504 * 109.46753 * 209.99972 * 20 18 16 23 23 H 1.48502 * 109.47173 * 329.99633 * 20 18 16 24 24 C 1.46929 * 118.73935 * 53.60887 * 15 14 13 25 25 H 1.08999 * 109.58429 * 66.18084 * 24 15 14 26 26 C 1.53004 * 109.58973 * 186.60471 * 24 15 14 27 27 C 1.53033 * 109.46384 * 204.99798 * 11 10 8 28 28 H 1.08999 * 109.47268 * 270.13574 * 1 2 3 29 29 H 1.08997 * 109.47220 * 30.13796 * 1 2 3 30 30 H 1.09000 * 109.46941 * 150.12867 * 1 2 3 31 31 H 0.97005 * 119.99549 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.49851 * 301.34038 * 13 11 10 33 33 H 1.08998 * 109.49126 * 61.43647 * 13 11 10 34 34 H 1.09002 * 109.58671 * 185.58236 * 14 13 11 35 35 H 1.09001 * 109.58768 * 65.15391 * 14 13 11 36 36 H 0.97001 * 119.99503 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47214 * 179.28748 * 26 24 15 38 38 H 1.09004 * 109.46694 * 299.29027 * 26 24 15 39 39 H 1.09003 * 109.46928 * 59.28728 * 26 24 15 40 40 H 1.08999 * 109.50202 * 298.56728 * 27 11 10 41 41 H 1.09003 * 109.50053 * 58.63138 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5324 0.6836 -0.0054 5 7 3.6057 -0.6014 -0.0043 6 1 4.4213 -1.1265 -0.0079 7 6 2.3280 -1.0968 0.0026 8 6 1.9222 -2.5121 0.0054 9 8 0.7422 -2.8064 0.0109 10 7 2.8585 -3.4816 0.0018 11 6 2.4549 -4.8898 0.0040 12 1 1.5483 -5.0066 0.5979 13 6 2.1856 -5.3454 -1.4321 14 6 1.7305 -6.8081 -1.4227 15 7 2.7353 -7.6115 -0.7131 16 6 3.2895 -8.7158 -1.3035 17 1 4.2967 -9.0140 -1.0527 18 6 2.5567 -9.4518 -2.2245 19 7 1.2535 -9.2886 -2.3098 20 14 3.4203 -10.6738 -3.3428 21 1 3.4606 -12.0043 -2.6846 22 1 2.6807 -10.7786 -4.6263 23 1 4.8061 -10.2098 -3.6066 24 6 3.1346 -7.2073 0.6419 25 1 2.2895 -7.3208 1.3209 26 6 4.2979 -8.0808 1.1159 27 6 3.5740 -5.7401 0.6094 28 1 -0.3634 0.0024 1.0276 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8911 -0.5118 31 1 3.7997 -3.2468 -0.0030 32 1 1.4046 -4.7242 -1.8705 33 1 3.0985 -5.2522 -2.0204 34 1 1.6328 -7.1670 -2.4473 35 1 0.7709 -6.8889 -0.9120 36 1 0.7414 -9.8032 -2.9532 37 1 4.6008 -7.7710 2.1161 38 1 3.9832 -9.1242 1.1383 39 1 5.1385 -7.9694 0.4308 40 1 4.4738 -5.6432 0.0019 41 1 3.7816 -5.3995 1.6238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947603775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:11 Heat of formation + Delta-G solvation = 71.273025 kcal Electronic energy + Delta-G solvation = -23856.263445 eV Core-core repulsion = 20387.639044 eV Total energy + Delta-G solvation = -3468.624401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60583 -39.82964 -37.77934 -35.05544 -34.08169 -32.76423 -32.40170 -31.35976 -29.68734 -28.00367 -26.48528 -25.14031 -24.26626 -22.75274 -21.92867 -21.06974 -20.38019 -19.67940 -18.82642 -16.85104 -16.71539 -16.32752 -16.00950 -15.21480 -14.71699 -14.38654 -14.01399 -13.97449 -13.76023 -13.39421 -13.23573 -12.92617 -12.88606 -12.80517 -12.09973 -11.69670 -11.39581 -11.34002 -11.22534 -11.04079 -10.99598 -10.80883 -10.72055 -10.42881 -10.31130 -10.19364 -10.11755 -9.85301 -9.54401 -9.49502 -8.94688 -8.50524 -6.71103 -5.83852 -3.28387 0.66245 2.03430 2.16664 2.88979 2.95418 3.33093 3.40821 3.41665 4.03014 4.38139 4.43383 4.64182 4.79848 5.12658 5.24673 5.34786 5.43113 5.47645 5.53562 5.62443 5.71021 5.84665 6.00871 6.03648 6.12927 6.21029 6.23464 6.27976 6.33009 6.37303 6.50466 6.66466 6.69393 6.93504 7.00619 7.25034 7.32954 7.60135 7.76640 7.94351 8.01820 8.40449 9.15695 9.78974 10.35845 11.25010 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003490 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.596115 B = 8021.140348 C = 8339.218893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.058 3.942 3 N -0.271 5.271 4 N -0.049 5.049 5 N -0.376 5.376 6 H 0.450 0.550 7 C -0.067 4.067 8 C 0.591 3.409 9 O -0.508 6.508 10 N -0.718 5.718 11 C 0.151 3.849 12 H 0.088 0.912 13 C -0.148 4.148 14 C 0.175 3.825 15 N -0.587 5.587 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.171 3.829 25 H 0.028 0.972 26 C -0.135 4.135 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.389 0.611 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.022 0.978 36 H 0.254 0.746 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 13.960 5.573 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 N -0.138 5.138 4 N -0.030 5.030 5 N -0.103 5.103 6 H 0.297 0.703 7 C -0.201 4.201 8 C 0.374 3.626 9 O -0.381 6.381 10 N -0.368 5.368 11 C 0.049 3.951 12 H 0.106 0.894 13 C -0.188 4.188 14 C 0.049 3.951 15 N -0.310 5.310 16 C -0.385 4.385 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.064 3.936 25 H 0.046 0.954 26 C -0.193 4.193 27 C -0.175 4.175 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.222 0.778 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.033 14.977 5.463 16.444 hybrid contribution 1.025 -1.778 -0.663 2.157 sum 5.058 13.199 4.800 14.927 Atomic orbital electron populations 1.20335 0.84733 1.04556 1.03852 1.22354 0.98692 0.86919 1.00168 1.74941 0.95186 1.26060 1.17605 1.78173 1.16081 0.92272 1.16518 1.45461 1.08881 1.07005 1.48972 0.70310 1.22299 0.84855 0.96910 1.16025 1.16744 0.86348 0.81968 0.77587 1.90858 1.16380 1.81657 1.49226 1.46289 1.08461 1.07587 1.74431 1.21187 0.98805 0.76422 0.98727 0.89433 1.22603 1.00951 1.00936 0.94317 1.20740 0.90152 0.84745 0.99466 1.44165 1.47689 1.28709 1.10483 1.19135 0.95963 1.02929 1.20429 0.91277 1.25111 0.94915 0.97813 1.01560 1.70014 1.04478 1.43012 1.36957 0.86348 0.78937 0.81306 0.80455 1.21373 1.21582 1.20526 1.20353 0.95041 0.89800 0.88428 0.95415 1.21790 0.98262 1.00893 0.98344 1.22413 0.97642 0.98222 0.99230 0.89930 0.90320 0.88541 0.77810 0.92663 0.92600 0.89259 0.95963 0.93573 0.94298 0.91773 0.92758 0.91749 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.93 36.00 0.36 -0.43 16 2 C 0.06 0.72 7.29 -82.39 -0.60 0.12 16 3 N -0.27 -3.56 12.35 33.51 0.41 -3.14 16 4 N -0.05 -0.57 13.35 60.35 0.81 0.23 16 5 N -0.38 -3.44 6.97 33.31 0.23 -3.21 16 6 H 0.45 2.29 8.32 -190.33 -1.58 0.70 16 7 C -0.07 -0.77 7.17 -82.33 -0.59 -1.36 16 8 C 0.59 7.80 7.77 -12.60 -0.10 7.70 16 9 O -0.51 -8.36 14.66 5.26 0.08 -8.28 16 10 N -0.72 -8.51 5.07 -54.90 -0.28 -8.79 16 11 C 0.15 2.32 2.42 -67.89 -0.16 2.16 16 12 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 13 C -0.15 -2.68 5.65 -26.61 -0.15 -2.83 16 14 C 0.18 3.99 5.28 -3.71 -0.02 3.97 16 15 N -0.59 -13.60 2.99 -164.77 -0.49 -14.09 16 16 C -0.26 -6.52 8.58 -15.06 -0.13 -6.65 16 17 H 0.07 1.72 6.23 -52.49 -0.33 1.39 16 18 C 0.01 0.13 4.94 -17.43 -0.09 0.05 16 19 N -0.90 -25.33 11.23 55.49 0.62 -24.71 16 20 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.17 3.24 3.50 -67.59 -0.24 3.01 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.14 -2.33 7.95 37.16 0.30 -2.03 16 27 C -0.14 -2.01 4.84 -26.61 -0.13 -2.14 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.10 6.62 -51.93 -0.34 0.76 16 31 H 0.39 3.28 7.87 -40.82 -0.32 2.96 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.21 7.67 -51.93 -0.40 0.82 16 39 H 0.05 0.94 7.40 -51.93 -0.38 0.55 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -31.14 332.24 -7.20 -38.34 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.01 Total: 1.19 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.55 Total: 1.57 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 1.30 Total: -53.71 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.14 -7.20 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947603775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.612 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds