Wall clock time and date at job start Tue Mar 31 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33321 * 126.81362 * 2 1 4 4 N 1.28517 * 109.43977 * 180.25521 * 3 2 1 5 5 N 1.28709 * 110.63772 * 359.77005 * 4 3 2 6 6 H 0.97004 * 126.03479 * 179.97438 * 5 4 3 7 7 C 1.37007 * 126.81665 * 179.86558 * 2 1 3 8 8 C 1.47232 * 127.18463 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00408 * 359.71104 * 8 7 2 10 10 N 1.34780 * 119.99881 * 179.70886 * 8 7 2 11 11 C 1.46494 * 120.00382 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.44889 * 324.96396 * 11 10 8 13 13 C 1.53046 * 109.46306 * 84.92693 * 11 10 8 14 14 C 1.53189 * 109.31448 * 181.38905 * 13 11 10 15 15 N 1.46924 * 108.77575 * 305.36620 * 14 13 11 16 16 C 1.36936 * 120.63202 * 233.62935 * 15 14 13 17 17 H 1.08000 * 119.99984 * 150.13910 * 16 15 14 18 18 C 1.38812 * 120.00024 * 330.14668 * 16 15 14 19 19 N 1.31618 * 119.99806 * 344.50034 * 18 16 15 20 20 Si 1.86805 * 119.99880 * 164.50100 * 18 16 15 21 21 H 1.48493 * 109.47197 * 90.00044 * 20 18 16 22 22 H 1.48504 * 109.46753 * 209.99972 * 20 18 16 23 23 H 1.48502 * 109.47173 * 329.99633 * 20 18 16 24 24 C 1.46929 * 118.73935 * 53.60887 * 15 14 13 25 25 H 1.08999 * 109.58429 * 66.18084 * 24 15 14 26 26 C 1.53004 * 109.58973 * 186.60471 * 24 15 14 27 27 C 1.53033 * 109.46384 * 204.99798 * 11 10 8 28 28 H 1.08999 * 109.47268 * 270.13574 * 1 2 3 29 29 H 1.08997 * 109.47220 * 30.13796 * 1 2 3 30 30 H 1.09000 * 109.46941 * 150.12867 * 1 2 3 31 31 H 0.97005 * 119.99549 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.49851 * 301.34038 * 13 11 10 33 33 H 1.08998 * 109.49126 * 61.43647 * 13 11 10 34 34 H 1.09002 * 109.58671 * 185.58236 * 14 13 11 35 35 H 1.09001 * 109.58768 * 65.15391 * 14 13 11 36 36 H 0.97001 * 119.99503 * 180.02562 * 19 18 16 37 37 H 1.08998 * 109.47214 * 179.28748 * 26 24 15 38 38 H 1.09004 * 109.46694 * 299.29027 * 26 24 15 39 39 H 1.09003 * 109.46928 * 59.28728 * 26 24 15 40 40 H 1.08999 * 109.50202 * 298.56728 * 27 11 10 41 41 H 1.09003 * 109.50053 * 58.63138 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0674 0.0000 4 7 3.5324 0.6836 -0.0054 5 7 3.6057 -0.6014 -0.0043 6 1 4.4213 -1.1265 -0.0079 7 6 2.3280 -1.0968 0.0026 8 6 1.9222 -2.5121 0.0054 9 8 0.7422 -2.8064 0.0109 10 7 2.8585 -3.4816 0.0018 11 6 2.4549 -4.8898 0.0040 12 1 1.5483 -5.0066 0.5979 13 6 2.1856 -5.3454 -1.4321 14 6 1.7305 -6.8081 -1.4227 15 7 2.7353 -7.6115 -0.7131 16 6 3.2895 -8.7158 -1.3035 17 1 4.2967 -9.0140 -1.0527 18 6 2.5567 -9.4518 -2.2245 19 7 1.2535 -9.2886 -2.3098 20 14 3.4203 -10.6738 -3.3428 21 1 3.4606 -12.0043 -2.6846 22 1 2.6807 -10.7786 -4.6263 23 1 4.8061 -10.2098 -3.6066 24 6 3.1346 -7.2073 0.6419 25 1 2.2895 -7.3208 1.3209 26 6 4.2979 -8.0808 1.1159 27 6 3.5740 -5.7401 0.6094 28 1 -0.3634 0.0024 1.0276 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3633 -0.8911 -0.5118 31 1 3.7997 -3.2468 -0.0030 32 1 1.4046 -4.7242 -1.8705 33 1 3.0985 -5.2522 -2.0204 34 1 1.6328 -7.1670 -2.4473 35 1 0.7709 -6.8889 -0.9120 36 1 0.7414 -9.8032 -2.9532 37 1 4.6008 -7.7710 2.1161 38 1 3.9832 -9.1242 1.1383 39 1 5.1385 -7.9694 0.4308 40 1 4.4738 -5.6432 0.0019 41 1 3.7816 -5.3995 1.6238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947603775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:10 Heat of formation + Delta-G solvation = 48.463112 kcal Electronic energy + Delta-G solvation = -23857.252557 eV Core-core repulsion = 20387.639044 eV Total energy + Delta-G solvation = -3469.613513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.50153 -41.01281 -39.25015 -36.35283 -35.10072 -34.22257 -33.63238 -32.81111 -31.28746 -28.96479 -27.93579 -26.75094 -25.39608 -24.02435 -23.30224 -22.21813 -21.64242 -21.07075 -19.94981 -18.30118 -17.73630 -17.59931 -17.22998 -16.90810 -15.91765 -15.77337 -15.62310 -15.29750 -14.96778 -14.80484 -14.53773 -14.33457 -14.01509 -13.70803 -13.33141 -13.02440 -12.93836 -12.72098 -12.70879 -12.60404 -12.35280 -12.30551 -12.11471 -11.86284 -11.71262 -11.68069 -11.52464 -11.44267 -11.05578 -10.56229 -10.47608 -10.10522 -8.62418 -7.83294 -5.29402 -0.25846 1.09794 1.36789 1.47692 1.49891 1.58058 1.85184 1.92528 2.53494 3.16625 3.33622 3.46111 3.61175 3.73871 3.86908 3.91996 4.04708 4.25399 4.39941 4.59332 4.62152 4.68664 4.75560 4.76477 4.79669 4.91772 4.95930 5.05582 5.06758 5.17051 5.28138 5.37909 5.41965 5.53269 5.57219 5.63628 5.73473 5.74900 6.30745 6.44705 6.94321 7.11030 7.18986 7.90813 8.42831 9.24049 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027782 B = 0.003490 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.596115 B = 8021.140348 C = 8339.218893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.051 3.949 3 N -0.294 5.294 4 N -0.051 5.051 5 N -0.348 5.348 6 H 0.469 0.531 7 C -0.069 4.069 8 C 0.596 3.404 9 O -0.543 6.543 10 N -0.701 5.701 11 C 0.164 3.836 12 H 0.067 0.933 13 C -0.132 4.132 14 C 0.183 3.817 15 N -0.603 5.603 16 C -0.249 4.249 17 H 0.079 0.921 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.960 3.040 21 H -0.287 1.287 22 H -0.299 1.299 23 H -0.267 1.267 24 C 0.159 3.841 25 H 0.013 0.987 26 C -0.127 4.127 27 C -0.119 4.119 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.411 0.589 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.052 0.948 35 H -0.010 1.010 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 15.353 6.609 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.033 5.033 5 N -0.079 5.079 6 H 0.320 0.680 7 C -0.204 4.204 8 C 0.380 3.620 9 O -0.418 6.418 10 N -0.352 5.352 11 C 0.060 3.940 12 H 0.085 0.915 13 C -0.172 4.172 14 C 0.056 3.944 15 N -0.327 5.327 16 C -0.379 4.379 17 H 0.097 0.903 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.226 1.226 23 H -0.191 1.191 24 C 0.052 3.948 25 H 0.031 0.969 26 C -0.185 4.185 27 C -0.159 4.159 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.248 0.752 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.008 0.992 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.771 16.399 6.526 18.904 hybrid contribution 0.206 -2.185 -0.917 2.379 sum 6.977 14.214 5.610 16.798 Atomic orbital electron populations 1.20362 0.83960 1.04582 1.04476 1.22680 0.99521 0.87020 0.99743 1.74952 0.95634 1.26632 1.18839 1.78116 1.15739 0.93065 1.16374 1.45408 1.08986 1.06403 1.47104 0.68019 1.21916 0.85691 0.95719 1.17032 1.16832 0.85854 0.82561 0.76712 1.90860 1.18008 1.82256 1.50699 1.45877 1.09573 1.05799 1.73918 1.20777 0.98666 0.78360 0.96229 0.91460 1.22331 1.00798 0.97422 0.96678 1.20445 0.89333 0.87687 0.96940 1.44427 1.47414 1.28407 1.12460 1.19519 0.96212 1.02740 1.19476 0.90316 1.25837 0.95412 1.00093 1.03546 1.70186 1.05928 1.44553 1.37913 0.85387 0.78292 0.79241 0.78198 1.21426 1.22613 1.19146 1.20645 0.95337 0.92966 0.85811 0.96922 1.21713 0.97219 0.98998 1.00559 1.22212 0.97286 0.94738 1.01651 0.89001 0.88947 0.89783 0.75218 0.93192 0.91863 0.92909 0.99169 0.94457 0.90414 0.94357 0.92612 0.90326 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.93 71.23 0.71 -0.79 16 2 C 0.05 1.17 7.29 42.04 0.31 1.48 16 3 N -0.29 -7.20 12.35 -47.88 -0.59 -7.79 16 4 N -0.05 -1.07 13.35 37.02 0.49 -0.58 16 5 N -0.35 -5.28 6.97 -48.52 -0.34 -5.62 16 6 H 0.47 2.88 8.32 -219.90 -1.83 1.05 16 7 C -0.07 -1.44 7.17 40.41 0.29 -1.15 16 8 C 0.60 14.57 7.77 86.61 0.67 15.24 16 9 O -0.54 -17.50 14.66 -4.10 -0.06 -17.56 16 10 N -0.70 -14.47 5.07 -445.87 -2.26 -16.73 16 11 C 0.16 4.72 2.42 45.02 0.11 4.83 16 12 H 0.07 2.29 7.58 -2.38 -0.02 2.27 16 13 C -0.13 -4.74 5.65 30.67 0.17 -4.56 16 14 C 0.18 8.60 5.28 86.36 0.46 9.06 16 15 N -0.60 -28.05 2.99 -675.22 -2.02 -30.07 16 16 C -0.25 -12.75 8.58 84.03 0.72 -12.03 16 17 H 0.08 3.82 6.23 -2.91 -0.02 3.80 16 18 C -0.05 -2.92 4.94 84.86 0.42 -2.50 16 19 N -0.94 -55.09 11.23 21.65 0.24 -54.85 16 20 Si 0.96 43.63 29.58 68.60 2.03 45.66 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 C 0.16 5.76 3.50 44.98 0.16 5.92 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 C -0.13 -4.05 7.95 71.98 0.57 -3.48 16 27 C -0.12 -3.13 4.84 30.67 0.15 -2.98 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.90 6.62 -2.39 -0.02 1.88 16 31 H 0.41 5.07 7.87 -92.70 -0.73 4.34 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 2.86 6.15 -2.39 -0.01 2.84 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.39 7.67 -2.39 -0.02 1.38 16 39 H 0.05 1.75 7.40 -2.39 -0.02 1.73 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.15 332.24 0.75 -69.40 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -1.49 Total: 9.10 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 4.73 Total: 9.03 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.47 Total: -115.64 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -70.15 0.75 -69.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947603775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.865 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds