Wall clock time and date at job start Tue Mar 31 2020 03:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70631 * 2 1 4 4 C 1.53196 * 109.58810 * 239.64222 * 2 1 3 5 5 C 1.53040 * 109.31304 * 185.57587 * 4 2 1 6 6 H 1.09000 * 109.45415 * 301.35572 * 5 4 2 7 7 N 1.46502 * 109.45799 * 181.38726 * 5 4 2 8 8 C 1.34777 * 120.00023 * 154.93823 * 7 5 4 9 9 O 1.21563 * 119.99552 * 359.97438 * 8 7 5 10 10 C 1.47799 * 120.00210 * 179.72473 * 8 7 5 11 11 C 1.40921 * 127.23648 * 179.97438 * 10 8 7 12 12 N 1.31140 * 105.77291 * 179.83645 * 11 10 8 13 13 N 1.28516 * 109.05873 * 0.43013 * 12 11 10 14 14 C 1.46497 * 124.44208 * 179.73474 * 13 12 11 15 15 N 1.28591 * 111.11435 * 359.71530 * 13 12 11 16 16 C 1.53039 * 109.53688 * 61.36729 * 5 4 2 17 17 C 1.53191 * 109.31449 * 298.63353 * 16 5 4 18 18 N 1.46925 * 109.58892 * 120.35382 * 2 1 3 19 19 C 1.36940 * 120.62856 * 353.37726 * 18 2 1 20 20 H 1.07997 * 120.00079 * 41.23478 * 19 18 2 21 21 C 1.38815 * 119.99889 * 221.24270 * 19 18 2 22 22 N 1.31616 * 119.99890 * 214.83104 * 21 19 18 23 23 Si 1.86795 * 120.00098 * 34.82458 * 21 19 18 24 24 H 1.48505 * 109.47170 * 84.63012 * 23 21 19 25 25 H 1.48496 * 109.47228 * 204.62738 * 23 21 19 26 26 H 1.48498 * 109.47458 * 324.62943 * 23 21 19 27 27 H 1.08999 * 109.46803 * 299.64656 * 1 2 3 28 28 H 1.08996 * 109.47137 * 59.64452 * 1 2 3 29 29 H 1.09003 * 109.46973 * 179.64301 * 1 2 3 30 30 H 1.09000 * 109.49616 * 65.62800 * 4 2 1 31 31 H 1.08998 * 109.49532 * 305.53408 * 4 2 1 32 32 H 0.97000 * 119.99889 * 334.93225 * 7 5 4 33 33 H 1.08002 * 127.11629 * 359.97438 * 11 10 8 34 34 H 1.09001 * 109.47274 * 269.97361 * 14 13 12 35 35 H 1.09000 * 109.47598 * 29.97280 * 14 13 12 36 36 H 1.09006 * 109.46918 * 149.97533 * 14 13 12 37 37 H 1.09007 * 109.49825 * 58.58435 * 16 5 4 38 38 H 1.09001 * 109.50333 * 178.64793 * 16 5 4 39 39 H 1.08995 * 109.58662 * 174.41979 * 17 16 5 40 40 H 1.09002 * 109.58799 * 294.70609 * 17 16 5 41 41 H 0.96999 * 120.00625 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0060 0.1474 -1.0992 7 7 4.0652 -1.5158 -2.3754 8 6 5.3290 -1.3012 -2.7915 9 8 6.0558 -0.5532 -2.1670 10 6 5.8331 -1.9796 -4.0040 11 6 7.1177 -1.8670 -4.5724 12 7 7.1100 -2.6455 -5.6277 13 7 5.9521 -3.1922 -5.7375 14 6 5.5725 -4.1216 -6.8044 15 7 5.1706 -2.8167 -4.7879 16 6 3.9569 -1.6657 0.0635 17 6 3.4651 -0.9469 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1127 2.1690 20 1 0.2059 -1.5526 1.8962 21 6 1.4913 -0.9659 3.5074 22 7 1.1097 -1.8694 4.3852 23 14 2.4871 0.5137 4.0628 24 1 1.5757 1.6607 4.3058 25 1 3.2099 0.1815 5.3167 26 1 3.4672 0.8752 3.0073 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8867 29 1 -0.3633 -1.0277 -0.0064 30 1 1.7661 -0.1669 -2.1368 31 1 1.6029 -1.7253 -1.2913 32 1 3.4851 -2.1124 -2.8738 33 1 7.9394 -1.2658 -4.2121 34 1 5.1594 -3.5621 -7.6437 35 1 6.4517 -4.6750 -7.1342 36 1 4.8237 -4.8192 -6.4291 37 1 3.4983 -2.6528 0.0053 38 1 5.0412 -1.7701 0.1035 39 1 3.6518 -1.5717 2.1971 40 1 3.9921 0.0009 1.4331 41 1 1.3459 -1.7672 5.3204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947799584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:34 Heat of formation + Delta-G solvation = 97.673876 kcal Electronic energy + Delta-G solvation = -23660.145815 eV Core-core repulsion = 20192.666241 eV Total energy + Delta-G solvation = -3467.479574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.88186 -39.68597 -37.77422 -34.70211 -34.09491 -33.00839 -32.29967 -31.53658 -30.12992 -28.28497 -26.52455 -25.05563 -23.86881 -22.34312 -22.30979 -21.05717 -20.16098 -19.39700 -17.96759 -17.26366 -17.08330 -16.34811 -15.85688 -15.10561 -14.95102 -14.76167 -14.46456 -14.04733 -13.59095 -13.46608 -13.33847 -13.29231 -13.01920 -12.60420 -12.17033 -12.00882 -11.69001 -11.29121 -11.26237 -11.01034 -10.94689 -10.69398 -10.56995 -10.45917 -10.25416 -10.16924 -9.97411 -9.79469 -9.68928 -9.43380 -8.79925 -8.33066 -6.69013 -6.05960 -3.36337 1.12005 1.73468 1.87491 3.13244 3.25142 3.44791 3.55024 3.61406 3.70775 4.53316 4.55459 4.61281 4.71974 4.82767 4.91548 4.95595 5.22918 5.28522 5.42692 5.46158 5.67874 5.73694 5.85277 6.06219 6.10891 6.21032 6.23015 6.29078 6.34095 6.45654 6.49479 6.58992 6.73406 6.89208 6.93285 7.05318 7.14054 7.53861 7.88013 8.05965 8.21393 8.44858 9.02975 9.74893 10.23996 11.09509 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.003471 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.157910 B = 8065.919820 C = 8412.698011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.029 0.971 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.707 5.707 8 C 0.605 3.395 9 O -0.527 6.527 10 C -0.041 4.041 11 C 0.034 3.966 12 N -0.293 5.293 13 N -0.147 5.147 14 C 0.104 3.896 15 N -0.251 5.251 16 C -0.143 4.143 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.275 4.275 20 H 0.077 0.923 21 C 0.050 3.950 22 N -0.881 5.881 23 Si 0.842 3.158 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.259 1.259 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.403 0.597 33 H 0.209 0.791 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -3.030 -21.737 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.047 0.953 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.356 5.356 8 C 0.387 3.613 9 O -0.402 6.402 10 C -0.204 4.204 11 C -0.149 4.149 12 N -0.133 5.133 13 N -0.049 5.049 14 C -0.035 4.035 15 N -0.100 5.100 16 C -0.183 4.183 17 C 0.021 3.979 18 N -0.320 5.320 19 C -0.403 4.403 20 H 0.094 0.906 21 C -0.152 4.152 22 N -0.519 5.519 23 Si 0.668 3.332 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.183 1.183 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.237 0.763 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.370 -3.433 -22.078 23.527 hybrid contribution 0.559 1.021 0.795 1.410 sum 7.929 -2.412 -21.283 22.840 Atomic orbital electron populations 1.21750 0.95079 1.01831 1.00366 1.20486 0.93717 0.93308 0.86342 0.95331 1.22365 0.93258 1.02086 0.99679 1.21100 0.94633 0.96688 0.82885 0.89698 1.46145 1.12600 1.48057 1.28816 1.16649 0.82356 0.80722 0.81530 1.90827 1.56582 1.37087 1.55681 1.23232 0.94574 1.02557 1.00072 1.24868 0.98425 0.99623 0.92011 1.74014 1.06711 1.11523 1.21059 1.48038 1.04784 1.32388 1.19707 1.22244 1.03682 0.91164 0.86448 1.74382 1.22960 1.13105 0.99529 1.22449 1.00035 0.99960 0.95870 1.21261 0.84717 0.96903 0.95052 1.44420 1.02325 1.65274 1.19974 1.18572 1.02321 1.35124 0.84309 0.90596 1.25588 0.96808 0.96906 0.95926 1.70077 1.47200 1.31389 1.03276 0.87385 0.80803 0.86817 0.78152 1.21525 1.22412 1.18343 0.91645 0.94300 0.92481 0.92320 0.91342 0.76265 0.77476 0.88865 0.87607 0.87539 0.91753 0.92438 0.91226 0.95487 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.07 37.16 0.30 -2.09 16 2 C 0.17 3.23 3.50 -67.60 -0.24 2.99 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.13 4.84 -26.61 -0.13 -2.26 16 5 C 0.15 2.47 2.42 -67.89 -0.16 2.30 16 6 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 7 N -0.71 -10.04 5.07 -54.72 -0.28 -10.31 16 8 C 0.61 9.13 7.79 -12.35 -0.10 9.04 16 9 O -0.53 -9.48 16.61 5.31 0.09 -9.39 16 10 C -0.04 -0.54 7.21 -82.68 -0.60 -1.13 16 11 C 0.03 0.40 12.04 -16.83 -0.20 0.20 16 12 N -0.29 -3.24 12.01 30.90 0.37 -2.87 16 13 N -0.15 -1.44 4.34 -16.63 -0.07 -1.51 16 14 C 0.10 0.44 11.55 59.85 0.69 1.13 16 15 N -0.25 -2.94 11.84 33.42 0.40 -2.54 16 16 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 17 C 0.15 3.22 4.59 -3.71 -0.02 3.20 16 18 N -0.60 -13.73 2.47 -164.77 -0.41 -14.14 16 19 C -0.28 -7.37 8.42 -15.06 -0.13 -7.50 16 20 H 0.08 2.16 6.83 -52.49 -0.36 1.81 16 21 C 0.05 1.42 4.82 -17.43 -0.08 1.33 16 22 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 23 Si 0.84 21.40 27.40 -169.99 -4.66 16.74 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.26 -6.37 5.24 56.52 0.30 -6.07 16 27 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.06 7.42 -51.93 -0.39 0.68 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.40 4.97 8.37 -40.82 -0.34 4.63 16 33 H 0.21 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.65 7.02 -51.93 -0.36 1.29 16 40 H 0.03 0.61 6.70 -51.93 -0.35 0.26 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -33.14 335.31 -5.60 -38.74 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.06 Total: 1.26 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.81 Total: 4.42 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.79 Total: -56.82 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.66 Total: 16.74 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.14 -5.60 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.412 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds