Wall clock time and date at job start Tue Mar 31 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70631 * 2 1 4 4 C 1.53196 * 109.58810 * 239.64222 * 2 1 3 5 5 C 1.53040 * 109.31304 * 185.57587 * 4 2 1 6 6 H 1.09000 * 109.45415 * 301.35572 * 5 4 2 7 7 N 1.46502 * 109.45799 * 181.38726 * 5 4 2 8 8 C 1.34777 * 120.00023 * 154.93823 * 7 5 4 9 9 O 1.21563 * 119.99552 * 359.97438 * 8 7 5 10 10 C 1.47799 * 120.00210 * 179.72473 * 8 7 5 11 11 C 1.40921 * 127.23648 * 179.97438 * 10 8 7 12 12 N 1.31140 * 105.77291 * 179.83645 * 11 10 8 13 13 N 1.28516 * 109.05873 * 0.43013 * 12 11 10 14 14 C 1.46497 * 124.44208 * 179.73474 * 13 12 11 15 15 N 1.28591 * 111.11435 * 359.71530 * 13 12 11 16 16 C 1.53039 * 109.53688 * 61.36729 * 5 4 2 17 17 C 1.53191 * 109.31449 * 298.63353 * 16 5 4 18 18 N 1.46925 * 109.58892 * 120.35382 * 2 1 3 19 19 C 1.36940 * 120.62856 * 353.37726 * 18 2 1 20 20 H 1.07997 * 120.00079 * 41.23478 * 19 18 2 21 21 C 1.38815 * 119.99889 * 221.24270 * 19 18 2 22 22 N 1.31616 * 119.99890 * 214.83104 * 21 19 18 23 23 Si 1.86795 * 120.00098 * 34.82458 * 21 19 18 24 24 H 1.48505 * 109.47170 * 84.63012 * 23 21 19 25 25 H 1.48496 * 109.47228 * 204.62738 * 23 21 19 26 26 H 1.48498 * 109.47458 * 324.62943 * 23 21 19 27 27 H 1.08999 * 109.46803 * 299.64656 * 1 2 3 28 28 H 1.08996 * 109.47137 * 59.64452 * 1 2 3 29 29 H 1.09003 * 109.46973 * 179.64301 * 1 2 3 30 30 H 1.09000 * 109.49616 * 65.62800 * 4 2 1 31 31 H 1.08998 * 109.49532 * 305.53408 * 4 2 1 32 32 H 0.97000 * 119.99889 * 334.93225 * 7 5 4 33 33 H 1.08002 * 127.11629 * 359.97438 * 11 10 8 34 34 H 1.09001 * 109.47274 * 269.97361 * 14 13 12 35 35 H 1.09000 * 109.47598 * 29.97280 * 14 13 12 36 36 H 1.09006 * 109.46918 * 149.97533 * 14 13 12 37 37 H 1.09007 * 109.49825 * 58.58435 * 16 5 4 38 38 H 1.09001 * 109.50333 * 178.64793 * 16 5 4 39 39 H 1.08995 * 109.58662 * 174.41979 * 17 16 5 40 40 H 1.09002 * 109.58799 * 294.70609 * 17 16 5 41 41 H 0.96999 * 120.00625 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0060 0.1474 -1.0992 7 7 4.0652 -1.5158 -2.3754 8 6 5.3290 -1.3012 -2.7915 9 8 6.0558 -0.5532 -2.1670 10 6 5.8331 -1.9796 -4.0040 11 6 7.1177 -1.8670 -4.5724 12 7 7.1100 -2.6455 -5.6277 13 7 5.9521 -3.1922 -5.7375 14 6 5.5725 -4.1216 -6.8044 15 7 5.1706 -2.8167 -4.7879 16 6 3.9569 -1.6657 0.0635 17 6 3.4651 -0.9469 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1127 2.1690 20 1 0.2059 -1.5526 1.8962 21 6 1.4913 -0.9659 3.5074 22 7 1.1097 -1.8694 4.3852 23 14 2.4871 0.5137 4.0628 24 1 1.5757 1.6607 4.3058 25 1 3.2099 0.1815 5.3167 26 1 3.4672 0.8752 3.0073 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8867 29 1 -0.3633 -1.0277 -0.0064 30 1 1.7661 -0.1669 -2.1368 31 1 1.6029 -1.7253 -1.2913 32 1 3.4851 -2.1124 -2.8738 33 1 7.9394 -1.2658 -4.2121 34 1 5.1594 -3.5621 -7.6437 35 1 6.4517 -4.6750 -7.1342 36 1 4.8237 -4.8192 -6.4291 37 1 3.4983 -2.6528 0.0053 38 1 5.0412 -1.7701 0.1035 39 1 3.6518 -1.5717 2.1971 40 1 3.9921 0.0009 1.4331 41 1 1.3459 -1.7672 5.3204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947799584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:33 Heat of formation + Delta-G solvation = 73.192690 kcal Electronic energy + Delta-G solvation = -23661.207399 eV Core-core repulsion = 20192.666241 eV Total energy + Delta-G solvation = -3468.541158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.70962 -40.96129 -39.29684 -36.16515 -34.82451 -34.30213 -33.78758 -33.11106 -31.72869 -29.00818 -28.01252 -26.60539 -25.16317 -23.93979 -23.12135 -22.39548 -21.46812 -20.96362 -18.99424 -18.35216 -18.02722 -17.87155 -17.25465 -16.73966 -16.27583 -15.97468 -15.79111 -15.37105 -15.17313 -14.80961 -14.70857 -14.42245 -13.98619 -13.81829 -13.64219 -13.32849 -13.03389 -12.77524 -12.67923 -12.54211 -12.44447 -12.14937 -12.08964 -11.90804 -11.64272 -11.59344 -11.55188 -11.46090 -11.12602 -10.51434 -10.46178 -10.07444 -8.61873 -8.23037 -5.48414 0.18819 0.86106 1.25714 1.38715 1.46133 1.54657 2.02740 2.15322 2.50148 2.85975 2.96870 3.43197 3.71601 3.84404 3.98905 4.02294 4.24504 4.30389 4.32270 4.32795 4.48411 4.56162 4.65019 4.67555 4.69223 4.76824 4.91294 4.94934 5.03697 5.08279 5.11441 5.13990 5.28661 5.45458 5.52366 5.52835 5.63198 5.97563 6.31235 6.42033 7.00201 7.05058 7.09897 7.69709 8.20758 8.96796 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.003471 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.157910 B = 8065.919820 C = 8412.698011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.034 0.966 4 C -0.120 4.120 5 C 0.159 3.841 6 H 0.075 0.925 7 N -0.696 5.696 8 C 0.608 3.392 9 O -0.561 6.561 10 C -0.065 4.065 11 C 0.029 3.971 12 N -0.298 5.298 13 N -0.134 5.134 14 C 0.087 3.913 15 N -0.251 5.251 16 C -0.131 4.131 17 C 0.146 3.854 18 N -0.607 5.607 19 C -0.254 4.254 20 H 0.052 0.948 21 C 0.000 4.000 22 N -0.927 5.927 23 Si 0.895 3.105 24 H -0.291 1.291 25 H -0.304 1.304 26 H -0.247 1.247 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.222 0.778 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.025 0.975 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 -2.885 -24.958 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.052 0.948 4 C -0.160 4.160 5 C 0.055 3.945 6 H 0.093 0.907 7 N -0.346 5.346 8 C 0.392 3.608 9 O -0.438 6.438 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.139 5.139 13 N -0.039 5.039 14 C -0.050 4.050 15 N -0.101 5.101 16 C -0.171 4.171 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.383 4.383 20 H 0.070 0.930 21 C -0.199 4.199 22 N -0.569 5.569 23 Si 0.722 3.278 24 H -0.218 1.218 25 H -0.231 1.231 26 H -0.171 1.171 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.238 0.762 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.851 -3.280 -25.355 26.745 hybrid contribution 0.389 0.879 1.612 1.877 sum 8.240 -2.401 -23.743 25.247 Atomic orbital electron populations 1.21683 0.94193 1.01347 1.01143 1.20759 0.94583 0.93545 0.85825 0.94842 1.22194 0.92429 1.02251 0.99095 1.20821 0.95042 0.95829 0.82782 0.90702 1.45900 1.12697 1.48004 1.28025 1.16843 0.82027 0.80132 0.81779 1.90806 1.57397 1.38625 1.56955 1.22894 0.95438 1.04073 1.00238 1.25149 0.98451 0.99787 0.91994 1.74033 1.07287 1.11687 1.20883 1.48656 1.04102 1.31604 1.19550 1.22812 1.05262 0.91117 0.85774 1.74336 1.23183 1.12787 0.99818 1.22259 0.99868 0.99596 0.95394 1.21180 0.84301 0.96625 0.95883 1.44568 1.02261 1.66007 1.20391 1.18509 1.01639 1.33175 0.85020 0.92997 1.26048 0.98781 0.98703 0.96325 1.70156 1.50213 1.33081 1.03490 0.86530 0.79704 0.83874 0.77692 1.21850 1.23089 1.17150 0.94073 0.90272 0.93624 0.88949 0.91165 0.74887 0.76192 0.86756 0.85694 0.85899 0.92102 0.92352 0.93800 0.95757 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.07 71.98 0.58 -3.74 16 2 C 0.16 5.78 3.50 44.97 0.16 5.93 16 3 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.12 -3.47 4.84 30.67 0.15 -3.32 16 5 C 0.16 4.92 2.42 45.02 0.11 5.03 16 6 H 0.07 2.53 7.57 -2.39 -0.02 2.52 16 7 N -0.70 -18.26 5.07 -445.32 -2.26 -20.52 16 8 C 0.61 17.46 7.79 86.77 0.68 18.14 16 9 O -0.56 -19.68 16.61 -3.91 -0.07 -19.75 16 10 C -0.07 -1.59 7.21 42.24 0.30 -1.29 16 11 C 0.03 0.62 12.04 85.45 1.03 1.65 16 12 N -0.30 -5.92 12.01 -56.16 -0.67 -6.59 16 13 N -0.13 -2.26 4.34 -206.54 -0.90 -3.16 16 14 C 0.09 0.44 11.55 127.77 1.48 1.92 16 15 N -0.25 -5.26 11.84 -48.17 -0.57 -5.83 16 16 C -0.13 -4.73 5.65 30.67 0.17 -4.56 16 17 C 0.15 6.37 4.59 86.36 0.40 6.77 16 18 N -0.61 -27.74 2.47 -675.23 -1.67 -29.41 16 19 C -0.25 -13.79 8.42 84.03 0.71 -13.09 16 20 H 0.05 3.05 6.83 -2.91 -0.02 3.03 16 21 C 0.00 0.01 4.82 84.86 0.41 0.42 16 22 N -0.93 -56.87 13.97 21.65 0.30 -56.57 16 23 Si 0.89 45.09 27.40 68.60 1.88 46.97 16 24 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 26 H -0.25 -11.84 5.24 99.48 0.52 -11.32 16 27 H 0.04 1.59 7.68 -2.39 -0.02 1.57 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.65 7.42 -2.39 -0.02 1.63 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 9.08 8.37 -92.71 -0.78 8.30 16 33 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 2.11 7.02 -2.39 -0.02 2.10 16 40 H 0.02 1.08 6.70 -2.39 -0.02 1.06 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -72.58 335.31 2.30 -70.28 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.08 Total: 10.72 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.17 Total: 13.86 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -5.76 Total: -122.08 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.07 Total: -19.75 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -72.58 2.30 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.469 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds