Wall clock time and date at job start Tue Mar 31 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58015 * 2 1 4 4 C 1.53195 * 109.58752 * 120.42594 * 2 1 3 5 5 C 1.53036 * 109.30996 * 174.42376 * 4 2 1 6 6 H 1.08998 * 109.46386 * 58.65335 * 5 4 2 7 7 N 1.46499 * 109.45985 * 178.63124 * 5 4 2 8 8 C 1.34780 * 120.00048 * 204.99997 * 7 5 4 9 9 O 1.21555 * 119.99914 * 359.97438 * 8 7 5 10 10 C 1.47798 * 119.99834 * 179.97438 * 8 7 5 11 11 C 1.40925 * 127.23370 * 180.02562 * 10 8 7 12 12 N 1.31139 * 105.77556 * 179.97438 * 11 10 8 13 13 N 1.28511 * 109.05746 * 359.97438 * 12 11 10 14 14 C 1.46499 * 124.44472 * 180.02562 * 13 12 11 15 15 N 1.28587 * 111.11644 * 359.74385 * 13 12 11 16 16 C 1.53041 * 109.53996 * 298.63658 * 5 4 2 17 17 C 1.52766 * 109.38583 * 61.23912 * 16 5 4 18 18 N 1.46923 * 109.00738 * 305.59243 * 17 16 5 19 19 C 1.36931 * 120.62975 * 233.58307 * 18 17 16 20 20 H 1.08000 * 120.00087 * 150.27281 * 19 18 17 21 21 C 1.38815 * 119.99962 * 330.26733 * 19 18 17 22 22 N 1.31616 * 119.99923 * 344.42202 * 21 19 18 23 23 Si 1.86802 * 119.99860 * 164.42123 * 21 19 18 24 24 H 1.48492 * 109.47071 * 266.31628 * 23 21 19 25 25 H 1.48504 * 109.47144 * 26.31902 * 23 21 19 26 26 H 1.48504 * 109.46762 * 146.31867 * 23 21 19 27 27 H 1.09005 * 109.47164 * 180.28654 * 1 2 3 28 28 H 1.09005 * 109.47120 * 300.28219 * 1 2 3 29 29 H 1.08999 * 109.47362 * 60.28184 * 1 2 3 30 30 H 1.08999 * 109.49752 * 294.37348 * 4 2 1 31 31 H 1.08999 * 109.49570 * 54.47142 * 4 2 1 32 32 H 0.96999 * 120.00029 * 24.99705 * 7 5 4 33 33 H 1.08001 * 127.11651 * 359.97438 * 11 10 8 34 34 H 1.09000 * 109.47666 * 89.97186 * 14 13 12 35 35 H 1.09005 * 109.47471 * 209.97606 * 14 13 12 36 36 H 1.09006 * 109.47193 * 329.97381 * 14 13 12 37 37 H 1.09004 * 109.50258 * 181.32114 * 16 5 4 38 38 H 1.09006 * 109.49628 * 301.41425 * 16 5 4 39 39 H 1.08992 * 109.51143 * 185.70597 * 17 16 5 40 40 H 1.08999 * 109.42622 * 65.42246 * 17 16 5 41 41 H 0.97002 * 120.00277 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 1 4.0061 0.1461 1.0994 7 7 4.0652 -1.5189 2.3732 8 6 5.3295 -1.3059 2.7890 9 8 6.0568 -0.5586 2.1645 10 6 5.8314 -1.9810 4.0042 11 6 7.1161 -1.8695 4.5726 12 7 7.1049 -2.6408 5.6331 13 7 5.9476 -3.1889 5.7412 14 6 5.5661 -4.1156 6.8098 15 7 5.1664 -2.8127 4.7917 16 6 3.9569 -1.6655 -0.0656 17 6 3.4644 -0.9501 -1.3224 18 7 2.0225 -0.6980 -1.1954 19 6 1.1536 -1.1108 -2.1699 20 1 0.1380 -1.3726 -1.9123 21 6 1.5781 -1.1926 -3.4890 22 7 2.6913 -0.5965 -3.8603 23 14 0.5695 -2.1487 -4.7372 24 1 1.0831 -3.5390 -4.8280 25 1 -0.8526 -2.1733 -4.3100 26 1 0.6761 -1.4938 -6.0657 27 1 -0.3634 -1.0277 0.0051 28 1 -0.3633 0.5182 0.8875 29 1 -0.3634 0.5094 -0.8925 30 1 1.7660 -0.1695 2.1366 31 1 1.6030 -1.7269 1.2892 32 1 3.4849 -2.1155 2.8714 33 1 7.9397 -1.2724 4.2098 34 1 5.1506 -3.5542 7.6466 35 1 4.8189 -4.8150 6.4347 36 1 6.4451 -4.6674 7.1432 37 1 5.0412 -1.7694 -0.1060 38 1 3.4983 -2.6527 -0.0086 39 1 3.6503 -1.5769 -2.1945 40 1 3.9927 -0.0030 -1.4310 41 1 2.9882 -0.6540 -4.7819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947799586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:37 Heat of formation + Delta-G solvation = 95.158518 kcal Electronic energy + Delta-G solvation = -23622.116262 eV Core-core repulsion = 20154.527613 eV Total energy + Delta-G solvation = -3467.588648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.83337 -39.57267 -37.60602 -34.60923 -34.04892 -32.96438 -32.32194 -31.25050 -29.55616 -28.20772 -26.37962 -25.09123 -23.95342 -22.28885 -21.97440 -21.00109 -20.00171 -19.26411 -17.89731 -17.21761 -17.01467 -16.24689 -15.71485 -15.09814 -14.94789 -14.66012 -14.06060 -13.88807 -13.62066 -13.40997 -13.30723 -13.23395 -12.80306 -12.66305 -12.09190 -11.58002 -11.24190 -11.19901 -11.10762 -10.90320 -10.88578 -10.66259 -10.63464 -10.28748 -10.18297 -10.04043 -9.98676 -9.71317 -9.63527 -9.38196 -8.70040 -8.39779 -6.61301 -5.74455 -3.18600 1.17641 1.78710 1.91853 3.22195 3.33270 3.39807 3.46590 3.47831 3.76226 4.51415 4.57944 4.58177 4.77269 4.85211 4.99840 5.29714 5.40204 5.44676 5.48488 5.60583 5.78952 5.80375 6.01402 6.18078 6.24912 6.28536 6.34042 6.43771 6.45145 6.53730 6.66757 6.82333 6.90168 7.05316 7.12569 7.41254 7.62461 7.72276 7.85527 7.93585 8.30942 8.49952 9.25280 9.88876 10.46179 11.34313 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.003297 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.168698 B = 8491.607718 C = 8677.461349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.085 0.915 7 N -0.707 5.707 8 C 0.604 3.396 9 O -0.526 6.526 10 C -0.040 4.040 11 C 0.034 3.966 12 N -0.294 5.294 13 N -0.147 5.147 14 C 0.105 3.895 15 N -0.252 5.252 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.588 5.588 19 C -0.251 4.251 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.289 1.289 25 H -0.279 1.279 26 H -0.292 1.292 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.401 0.599 33 H 0.209 0.791 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -5.681 20.289 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.103 0.897 7 N -0.356 5.356 8 C 0.386 3.614 9 O -0.400 6.400 10 C -0.203 4.203 11 C -0.149 4.149 12 N -0.134 5.134 13 N -0.050 5.050 14 C -0.035 4.035 15 N -0.101 5.101 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.381 4.381 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.216 1.216 25 H -0.204 1.204 26 H -0.218 1.218 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.125 -5.974 20.641 21.880 hybrid contribution -0.396 -0.337 -0.992 1.121 sum 3.729 -6.311 19.648 20.971 Atomic orbital electron populations 1.21795 0.95768 1.01374 1.00358 1.20357 0.93077 0.93616 0.86533 0.95439 1.22387 0.93505 1.01759 0.99744 1.21138 0.94432 0.96803 0.82905 0.89718 1.46191 1.12470 1.47970 1.29005 1.16650 0.82440 0.80799 0.81536 1.90831 1.56498 1.37018 1.55668 1.23276 0.94456 1.02608 0.99954 1.24873 0.98488 0.99748 0.91837 1.74005 1.06752 1.11611 1.21003 1.48026 1.04846 1.32410 1.19724 1.22231 1.03619 0.91236 0.86413 1.74377 1.22931 1.13200 0.99583 1.22521 0.99895 0.99660 0.96689 1.20649 0.83292 0.97349 0.93821 1.44155 1.03034 1.64951 1.18977 1.19178 0.95035 1.37751 0.86139 0.91237 1.25103 0.97895 0.99596 0.96982 1.70027 1.23955 1.43804 1.16768 0.86312 0.79796 0.79794 0.81063 1.21578 1.20429 1.21838 0.92811 0.94310 0.91820 0.92589 0.91721 0.76468 0.77460 0.88916 0.87591 0.87635 0.92698 0.92619 0.89354 0.96073 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.19 16 2 C 0.17 3.48 3.50 -67.60 -0.24 3.25 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 5 C 0.15 2.65 2.42 -67.89 -0.16 2.48 16 6 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 7 N -0.71 -10.68 5.07 -54.73 -0.28 -10.96 16 8 C 0.60 9.62 7.79 -12.35 -0.10 9.53 16 9 O -0.53 -9.97 16.61 5.32 0.09 -9.88 16 10 C -0.04 -0.54 7.21 -82.68 -0.60 -1.14 16 11 C 0.03 0.41 12.04 -16.83 -0.20 0.21 16 12 N -0.29 -3.37 12.01 30.90 0.37 -3.00 16 13 N -0.15 -1.51 4.34 -16.63 -0.07 -1.58 16 14 C 0.10 0.48 11.55 59.85 0.69 1.17 16 15 N -0.25 -3.08 11.84 33.42 0.40 -2.68 16 16 C -0.15 -2.95 5.63 -26.83 -0.15 -3.10 16 17 C 0.18 4.23 5.26 -3.93 -0.02 4.21 16 18 N -0.59 -14.37 2.99 -165.04 -0.49 -14.86 16 19 C -0.25 -6.68 8.58 -15.06 -0.13 -6.81 16 20 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 21 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 22 N -0.90 -26.15 11.23 55.49 0.62 -25.53 16 23 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 5.25 8.37 -40.82 -0.34 4.91 16 33 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -32.80 337.87 -6.08 -38.87 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.95 Total: 2.76 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.82 Total: 5.22 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.55 Total: -58.61 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.80 -6.08 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.033 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds