Wall clock time and date at job start Tue Mar 31 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58015 * 2 1 4 4 C 1.53195 * 109.58752 * 120.42594 * 2 1 3 5 5 C 1.53036 * 109.30996 * 174.42376 * 4 2 1 6 6 H 1.08998 * 109.46386 * 58.65335 * 5 4 2 7 7 N 1.46499 * 109.45985 * 178.63124 * 5 4 2 8 8 C 1.34780 * 120.00048 * 204.99997 * 7 5 4 9 9 O 1.21555 * 119.99914 * 359.97438 * 8 7 5 10 10 C 1.47798 * 119.99834 * 179.97438 * 8 7 5 11 11 C 1.40925 * 127.23370 * 180.02562 * 10 8 7 12 12 N 1.31139 * 105.77556 * 179.97438 * 11 10 8 13 13 N 1.28511 * 109.05746 * 359.97438 * 12 11 10 14 14 C 1.46499 * 124.44472 * 180.02562 * 13 12 11 15 15 N 1.28587 * 111.11644 * 359.74385 * 13 12 11 16 16 C 1.53041 * 109.53996 * 298.63658 * 5 4 2 17 17 C 1.52766 * 109.38583 * 61.23912 * 16 5 4 18 18 N 1.46923 * 109.00738 * 305.59243 * 17 16 5 19 19 C 1.36931 * 120.62975 * 233.58307 * 18 17 16 20 20 H 1.08000 * 120.00087 * 150.27281 * 19 18 17 21 21 C 1.38815 * 119.99962 * 330.26733 * 19 18 17 22 22 N 1.31616 * 119.99923 * 344.42202 * 21 19 18 23 23 Si 1.86802 * 119.99860 * 164.42123 * 21 19 18 24 24 H 1.48492 * 109.47071 * 266.31628 * 23 21 19 25 25 H 1.48504 * 109.47144 * 26.31902 * 23 21 19 26 26 H 1.48504 * 109.46762 * 146.31867 * 23 21 19 27 27 H 1.09005 * 109.47164 * 180.28654 * 1 2 3 28 28 H 1.09005 * 109.47120 * 300.28219 * 1 2 3 29 29 H 1.08999 * 109.47362 * 60.28184 * 1 2 3 30 30 H 1.08999 * 109.49752 * 294.37348 * 4 2 1 31 31 H 1.08999 * 109.49570 * 54.47142 * 4 2 1 32 32 H 0.96999 * 120.00029 * 24.99705 * 7 5 4 33 33 H 1.08001 * 127.11651 * 359.97438 * 11 10 8 34 34 H 1.09000 * 109.47666 * 89.97186 * 14 13 12 35 35 H 1.09005 * 109.47471 * 209.97606 * 14 13 12 36 36 H 1.09006 * 109.47193 * 329.97381 * 14 13 12 37 37 H 1.09004 * 109.50258 * 181.32114 * 16 5 4 38 38 H 1.09006 * 109.49628 * 301.41425 * 16 5 4 39 39 H 1.08992 * 109.51143 * 185.70597 * 17 16 5 40 40 H 1.08999 * 109.42622 * 65.42246 * 17 16 5 41 41 H 0.97002 * 120.00277 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 1.2445 5 6 3.5675 -0.8493 1.1690 6 1 4.0061 0.1461 1.0994 7 7 4.0652 -1.5189 2.3732 8 6 5.3295 -1.3059 2.7890 9 8 6.0568 -0.5586 2.1645 10 6 5.8314 -1.9810 4.0042 11 6 7.1161 -1.8695 4.5726 12 7 7.1049 -2.6408 5.6331 13 7 5.9476 -3.1889 5.7412 14 6 5.5661 -4.1156 6.8098 15 7 5.1664 -2.8127 4.7917 16 6 3.9569 -1.6655 -0.0656 17 6 3.4644 -0.9501 -1.3224 18 7 2.0225 -0.6980 -1.1954 19 6 1.1536 -1.1108 -2.1699 20 1 0.1380 -1.3726 -1.9123 21 6 1.5781 -1.1926 -3.4890 22 7 2.6913 -0.5965 -3.8603 23 14 0.5695 -2.1487 -4.7372 24 1 1.0831 -3.5390 -4.8280 25 1 -0.8526 -2.1733 -4.3100 26 1 0.6761 -1.4938 -6.0657 27 1 -0.3634 -1.0277 0.0051 28 1 -0.3633 0.5182 0.8875 29 1 -0.3634 0.5094 -0.8925 30 1 1.7660 -0.1695 2.1366 31 1 1.6030 -1.7269 1.2892 32 1 3.4849 -2.1155 2.8714 33 1 7.9397 -1.2724 4.2098 34 1 5.1506 -3.5542 7.6466 35 1 4.8189 -4.8150 6.4347 36 1 6.4451 -4.6674 7.1432 37 1 5.0412 -1.7694 -0.1060 38 1 3.4983 -2.6527 -0.0086 39 1 3.6503 -1.5769 -2.1945 40 1 3.9927 -0.0030 -1.4310 41 1 2.9882 -0.6540 -4.7819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947799586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:37 Heat of formation + Delta-G solvation = 71.218140 kcal Electronic energy + Delta-G solvation = -23623.154395 eV Core-core repulsion = 20154.527613 eV Total energy + Delta-G solvation = -3468.626781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.71154 -40.93862 -39.21714 -36.15787 -34.82486 -34.27247 -33.79237 -32.86136 -31.26424 -28.98221 -27.95123 -26.75884 -25.24096 -23.66048 -23.11773 -22.43064 -21.40214 -20.89155 -18.97479 -18.26405 -18.02861 -17.85896 -17.21792 -16.78336 -15.97223 -15.81962 -15.70302 -15.54451 -15.16973 -14.84133 -14.56244 -14.35525 -13.82058 -13.64154 -13.32225 -13.07271 -12.94368 -12.71758 -12.65485 -12.61246 -12.36010 -12.14830 -12.05918 -11.86034 -11.70121 -11.55534 -11.49929 -11.48149 -11.06145 -10.54581 -10.49997 -10.04088 -8.62326 -7.81597 -5.28103 0.18712 0.85708 1.25893 1.48913 1.50288 1.58992 2.03656 2.15320 2.54560 2.85678 3.34508 3.60764 3.73844 3.87118 4.00831 4.06836 4.27791 4.30796 4.32667 4.40900 4.47906 4.63289 4.67486 4.72877 4.78332 4.82147 4.91697 4.97220 5.08383 5.09606 5.17841 5.40980 5.45771 5.52633 5.54769 5.57773 5.73512 5.75686 6.42872 6.45743 7.00650 7.10752 7.19598 7.91283 8.44331 9.25986 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.003297 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.168698 B = 8491.607718 C = 8677.461349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.015 0.985 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.065 0.935 7 N -0.695 5.695 8 C 0.606 3.394 9 O -0.563 6.563 10 C -0.065 4.065 11 C 0.028 3.972 12 N -0.297 5.297 13 N -0.133 5.133 14 C 0.087 3.913 15 N -0.250 5.250 16 C -0.132 4.132 17 C 0.184 3.816 18 N -0.604 5.604 19 C -0.248 4.248 20 H 0.080 0.920 21 C -0.056 4.056 22 N -0.940 5.940 23 Si 0.963 3.037 24 H -0.289 1.289 25 H -0.263 1.263 26 H -0.300 1.300 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.415 0.585 33 H 0.221 0.779 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.054 0.946 40 H -0.009 1.009 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -7.166 23.295 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.032 0.968 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.345 5.345 8 C 0.390 3.610 9 O -0.440 6.440 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.138 5.138 13 N -0.038 5.038 14 C -0.050 4.050 15 N -0.100 5.100 16 C -0.172 4.172 17 C 0.057 3.943 18 N -0.328 5.328 19 C -0.379 4.379 20 H 0.098 0.902 21 C -0.251 4.251 22 N -0.587 5.587 23 Si 0.792 3.208 24 H -0.217 1.217 25 H -0.188 1.188 26 H -0.227 1.227 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.237 0.763 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.009 0.991 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.478 23.704 25.004 hybrid contribution 0.041 0.100 -1.770 1.773 sum 2.766 -7.379 21.934 23.306 Atomic orbital electron populations 1.21714 0.93871 1.01684 1.01167 1.20635 0.94724 0.92999 0.86252 0.96769 1.22197 0.92231 1.02313 0.99034 1.20789 0.95218 0.95445 0.82836 0.91681 1.45902 1.12612 1.47937 1.28078 1.16892 0.82072 0.80162 0.81862 1.90812 1.57405 1.38706 1.57082 1.22860 0.95381 1.04281 1.00045 1.25137 0.98469 0.99938 0.91866 1.74029 1.07332 1.11727 1.20719 1.48665 1.04123 1.31516 1.19531 1.22822 1.05267 0.91191 0.85692 1.74327 1.23088 1.12786 0.99832 1.22263 0.99295 0.99581 0.96055 1.20347 0.83710 0.95582 0.94616 1.44419 1.02698 1.65654 1.19981 1.19557 0.95533 1.36220 0.86550 0.90238 1.25868 0.99159 1.01065 0.98994 1.70199 1.25944 1.45906 1.16605 0.85308 0.79141 0.78030 0.78326 1.21664 1.18774 1.22742 0.92673 0.90440 0.94085 0.89205 0.90682 0.74847 0.76274 0.86744 0.85834 0.85656 0.93337 0.92157 0.92768 0.99126 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.95 71.98 0.57 -3.79 16 2 C 0.16 6.34 3.50 44.97 0.16 6.49 16 3 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.12 -3.69 4.84 30.67 0.15 -3.54 16 5 C 0.16 5.57 2.42 45.02 0.11 5.67 16 6 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 7 N -0.70 -19.94 5.07 -445.33 -2.26 -22.20 16 8 C 0.61 18.93 7.79 86.77 0.68 19.61 16 9 O -0.56 -21.63 16.61 -3.89 -0.06 -21.70 16 10 C -0.06 -1.68 7.21 42.24 0.30 -1.38 16 11 C 0.03 0.65 12.04 85.45 1.03 1.68 16 12 N -0.30 -6.19 12.01 -56.16 -0.67 -6.86 16 13 N -0.13 -2.35 4.34 -206.53 -0.90 -3.25 16 14 C 0.09 0.48 11.55 127.77 1.48 1.96 16 15 N -0.25 -5.49 11.84 -48.17 -0.57 -6.06 16 16 C -0.13 -5.34 5.63 30.53 0.17 -5.17 16 17 C 0.18 9.27 5.26 86.22 0.45 9.72 16 18 N -0.60 -29.85 2.99 -676.06 -2.02 -31.88 16 19 C -0.25 -13.26 8.58 84.04 0.72 -12.54 16 20 H 0.08 4.03 6.23 -2.91 -0.02 4.01 16 21 C -0.06 -3.14 4.94 84.86 0.42 -2.72 16 22 N -0.94 -56.79 11.23 21.65 0.24 -56.54 16 23 Si 0.96 44.99 29.58 68.60 2.03 47.02 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H 0.05 1.87 7.44 -2.38 -0.02 1.85 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.58 7.62 -2.39 -0.02 1.56 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.41 9.76 8.37 -92.71 -0.78 8.99 16 33 H 0.22 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.13 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.05 3.08 6.14 -2.39 -0.01 3.07 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -73.34 337.87 2.29 -71.05 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.27 Total: 14.43 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.24 Total: 16.00 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.18 Total: -126.80 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.34 2.29 -71.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.265 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds