Wall clock time and date at job start Tue Mar 31 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58482 * 2 1 4 4 C 1.53189 * 109.70386 * 120.35537 * 2 1 3 5 5 C 1.53040 * 109.31179 * 65.22186 * 4 2 1 6 6 H 1.08998 * 109.46141 * 301.34351 * 5 4 2 7 7 N 1.46504 * 109.45870 * 181.38912 * 5 4 2 8 8 C 1.34771 * 119.99841 * 155.00142 * 7 5 4 9 9 O 1.21555 * 120.00250 * 359.97438 * 8 7 5 10 10 C 1.47803 * 119.99857 * 179.97438 * 8 7 5 11 11 C 1.40926 * 127.23748 * 179.70862 * 10 8 7 12 12 N 1.31133 * 105.77897 * 179.83882 * 11 10 8 13 13 N 1.28524 * 109.05352 * 0.43459 * 12 11 10 14 14 C 1.46498 * 124.43893 * 179.73619 * 13 12 11 15 15 N 1.28581 * 111.11433 * 359.70862 * 13 12 11 16 16 C 1.53039 * 109.53675 * 61.36729 * 5 4 2 17 17 C 1.53184 * 109.31395 * 298.63232 * 16 5 4 18 18 N 1.46924 * 109.58781 * 239.71691 * 2 1 3 19 19 C 1.36941 * 120.63216 * 113.65837 * 18 2 1 20 20 H 1.07998 * 119.99812 * 27.69383 * 19 18 2 21 21 C 1.38808 * 119.99888 * 207.69068 * 19 18 2 22 22 N 1.31615 * 119.99919 * 17.36957 * 21 19 18 23 23 Si 1.86803 * 119.99890 * 197.36157 * 21 19 18 24 24 H 1.48503 * 109.47142 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46750 * 120.00271 * 23 21 19 26 26 H 1.48496 * 109.47304 * 240.00264 * 23 21 19 27 27 H 1.08999 * 109.46982 * 180.27810 * 1 2 3 28 28 H 1.08994 * 109.47291 * 300.28495 * 1 2 3 29 29 H 1.09000 * 109.46779 * 60.28542 * 1 2 3 30 30 H 1.09003 * 109.50006 * 185.17447 * 4 2 1 31 31 H 1.09006 * 109.49872 * 305.24067 * 4 2 1 32 32 H 0.97000 * 120.00117 * 334.99648 * 7 5 4 33 33 H 1.08000 * 127.10899 * 359.97438 * 11 10 8 34 34 H 1.09005 * 109.46877 * 269.97305 * 14 13 12 35 35 H 1.08996 * 109.47902 * 29.97102 * 14 13 12 36 36 H 1.09001 * 109.47232 * 149.97383 * 14 13 12 37 37 H 1.09004 * 109.49619 * 178.68037 * 16 5 4 38 38 H 1.08995 * 109.49856 * 58.58842 * 16 5 4 39 39 H 1.09001 * 109.59004 * 294.84950 * 17 16 5 40 40 H 1.08997 * 109.59134 * 174.42154 * 17 16 5 41 41 H 0.97007 * 119.99487 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 6 1.6473 -2.2043 1.1691 6 1 0.5624 -2.2839 1.0995 7 7 2.1109 -2.8976 2.3735 8 6 1.4864 -4.0172 2.7892 9 8 0.5381 -4.4516 2.1649 10 6 1.9545 -4.7169 4.0040 11 6 1.4156 -5.8870 4.5752 12 7 2.1502 -6.1390 5.6318 13 7 3.0547 -5.2323 5.7399 14 6 4.0567 -5.1848 6.8076 15 7 2.9650 -4.3728 4.7879 16 6 2.2857 -2.8448 -0.0655 17 6 1.7720 -2.1400 -1.3249 18 7 2.0226 -0.6980 -1.1953 19 6 2.7020 -0.0176 -2.1704 20 1 3.2656 0.8684 -1.9177 21 6 2.6662 -0.4666 -3.4833 22 7 1.7348 -1.3151 -3.8635 23 14 3.9401 0.1338 -4.7107 24 1 4.8708 1.0751 -4.0377 25 1 4.7043 -1.0253 -5.2378 26 1 3.2581 0.8283 -5.8322 27 1 -0.3633 -1.0276 0.0050 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5094 -0.8925 30 1 3.1326 -0.6476 1.2892 31 1 1.6110 -0.2788 2.1367 32 1 2.8675 -2.5508 2.8718 33 1 0.5731 -6.4593 4.2157 34 1 3.6681 -4.6053 7.6450 35 1 4.2816 -6.1981 7.1403 36 1 4.9660 -4.7157 6.4318 37 1 2.0201 -3.9012 -0.1058 38 1 3.3695 -2.7437 -0.0085 39 1 0.7017 -2.3167 -1.4317 40 1 2.2970 -2.5250 -2.1991 41 1 1.7096 -1.6286 -4.7812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947799592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:40 Heat of formation + Delta-G solvation = 95.202421 kcal Electronic energy + Delta-G solvation = -23727.787483 eV Core-core repulsion = 20260.200738 eV Total energy + Delta-G solvation = -3467.586745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.83114 -39.60688 -37.68205 -34.51861 -34.04563 -32.97870 -32.37518 -30.75922 -29.58636 -28.21869 -26.88731 -24.75798 -23.84204 -22.29009 -21.94058 -21.59742 -20.22989 -18.59713 -17.79716 -17.21732 -17.08855 -16.50376 -15.82967 -15.01506 -14.73198 -14.65331 -14.10925 -13.73374 -13.68855 -13.40029 -13.31931 -13.06420 -12.63565 -12.48905 -12.19578 -12.06164 -11.38838 -11.23606 -11.05918 -10.90454 -10.79443 -10.64764 -10.60670 -10.32674 -10.16185 -10.12108 -9.87484 -9.69921 -9.63283 -9.34737 -8.70972 -8.38935 -6.66803 -5.76303 -3.18470 1.17883 1.78870 1.92018 3.22922 3.33595 3.38943 3.46831 3.48624 3.76511 4.50689 4.58145 4.58301 4.77468 4.85345 4.99856 5.31653 5.41339 5.42356 5.48532 5.62693 5.78924 5.82548 6.04371 6.09951 6.26328 6.29179 6.33267 6.44903 6.48985 6.61723 6.68251 6.82049 6.89966 6.97449 7.18596 7.41785 7.62886 7.73045 7.82730 7.93806 8.31379 8.47855 9.23690 9.87277 10.43832 11.31931 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.003337 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.691941 B = 8387.871841 C = 8527.929082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.065 0.935 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.088 0.912 7 N -0.707 5.707 8 C 0.603 3.397 9 O -0.526 6.526 10 C -0.040 4.040 11 C 0.034 3.966 12 N -0.294 5.294 13 N -0.148 5.148 14 C 0.105 3.895 15 N -0.252 5.252 16 C -0.148 4.148 17 C 0.174 3.826 18 N -0.586 5.586 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.899 5.899 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.401 0.599 33 H 0.209 0.791 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.089 0.911 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -6.028 20.301 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.046 3.954 6 H 0.106 0.894 7 N -0.357 5.357 8 C 0.386 3.614 9 O -0.400 6.400 10 C -0.203 4.203 11 C -0.150 4.150 12 N -0.134 5.134 13 N -0.050 5.050 14 C -0.035 4.035 15 N -0.101 5.101 16 C -0.188 4.188 17 C 0.048 3.952 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.235 0.765 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.108 0.892 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.707 -6.337 20.644 21.911 hybrid contribution 0.406 0.284 -0.998 1.114 sum 4.113 -6.054 19.646 20.965 Atomic orbital electron populations 1.22305 0.98653 1.01163 1.00097 1.20433 0.91806 0.95104 0.86443 0.91633 1.22305 1.01292 0.93974 0.99657 1.21200 0.99956 0.91399 0.82835 0.89363 1.46202 1.34380 1.26065 1.29012 1.16647 0.82652 0.80602 0.81531 1.90829 1.27694 1.65849 1.55673 1.23280 0.97343 0.99653 1.00021 1.24871 1.01329 0.96791 0.91963 1.74008 1.02401 1.15835 1.21129 1.48027 1.23072 1.14290 1.19627 1.22229 0.88998 1.05830 0.86440 1.74373 1.19251 1.16972 0.99484 1.22588 1.00253 0.99254 0.96710 1.20751 0.97792 0.82848 0.93851 1.44188 1.63939 1.03446 1.19139 1.19201 1.22130 1.10086 0.86733 0.91624 1.25039 0.97739 1.00014 0.96788 1.70047 1.31785 1.35701 1.16822 0.86258 0.81357 0.78035 0.81315 1.20300 1.21631 1.21794 0.93145 0.94482 0.92579 0.91792 0.92505 0.76494 0.77467 0.88907 0.87646 0.87594 0.92771 0.92604 0.95959 0.89247 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.03 37.16 0.34 -2.77 16 2 C 0.17 3.42 3.28 -67.60 -0.22 3.20 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.22 5.03 -26.61 -0.13 -2.35 16 5 C 0.15 2.61 2.21 -67.89 -0.15 2.46 16 6 H 0.09 1.70 5.94 -51.93 -0.31 1.39 16 7 N -0.71 -10.67 5.07 -54.72 -0.28 -10.94 16 8 C 0.60 9.61 7.79 -12.35 -0.10 9.51 16 9 O -0.53 -9.96 16.61 5.32 0.09 -9.87 16 10 C -0.04 -0.54 7.21 -82.68 -0.60 -1.14 16 11 C 0.03 0.41 12.04 -16.83 -0.20 0.21 16 12 N -0.29 -3.37 12.01 30.90 0.37 -3.00 16 13 N -0.15 -1.51 4.34 -16.63 -0.07 -1.58 16 14 C 0.10 0.48 11.55 59.85 0.69 1.17 16 15 N -0.25 -3.07 11.84 33.42 0.40 -2.68 16 16 C -0.15 -2.96 5.65 -26.62 -0.15 -3.11 16 17 C 0.17 4.17 4.90 -3.71 -0.02 4.15 16 18 N -0.59 -14.24 2.70 -164.78 -0.45 -14.69 16 19 C -0.25 -6.77 9.59 -15.06 -0.14 -6.91 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 23 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.05 1.00 5.74 -51.93 -0.30 0.70 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.40 5.24 8.37 -40.82 -0.34 4.90 16 33 H 0.21 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 40 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -32.73 336.92 -5.88 -38.61 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.84 Total: 3.49 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.77 Total: 4.42 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.59 Total: -58.25 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.73 -5.88 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.812 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds