Wall clock time and date at job start Tue Mar 31 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58482 * 2 1 4 4 C 1.53189 * 109.70386 * 120.35537 * 2 1 3 5 5 C 1.53040 * 109.31179 * 65.22186 * 4 2 1 6 6 H 1.08998 * 109.46141 * 301.34351 * 5 4 2 7 7 N 1.46504 * 109.45870 * 181.38912 * 5 4 2 8 8 C 1.34771 * 119.99841 * 155.00142 * 7 5 4 9 9 O 1.21555 * 120.00250 * 359.97438 * 8 7 5 10 10 C 1.47803 * 119.99857 * 179.97438 * 8 7 5 11 11 C 1.40926 * 127.23748 * 179.70862 * 10 8 7 12 12 N 1.31133 * 105.77897 * 179.83882 * 11 10 8 13 13 N 1.28524 * 109.05352 * 0.43459 * 12 11 10 14 14 C 1.46498 * 124.43893 * 179.73619 * 13 12 11 15 15 N 1.28581 * 111.11433 * 359.70862 * 13 12 11 16 16 C 1.53039 * 109.53675 * 61.36729 * 5 4 2 17 17 C 1.53184 * 109.31395 * 298.63232 * 16 5 4 18 18 N 1.46924 * 109.58781 * 239.71691 * 2 1 3 19 19 C 1.36941 * 120.63216 * 113.65837 * 18 2 1 20 20 H 1.07998 * 119.99812 * 27.69383 * 19 18 2 21 21 C 1.38808 * 119.99888 * 207.69068 * 19 18 2 22 22 N 1.31615 * 119.99919 * 17.36957 * 21 19 18 23 23 Si 1.86803 * 119.99890 * 197.36157 * 21 19 18 24 24 H 1.48503 * 109.47142 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46750 * 120.00271 * 23 21 19 26 26 H 1.48496 * 109.47304 * 240.00264 * 23 21 19 27 27 H 1.08999 * 109.46982 * 180.27810 * 1 2 3 28 28 H 1.08994 * 109.47291 * 300.28495 * 1 2 3 29 29 H 1.09000 * 109.46779 * 60.28542 * 1 2 3 30 30 H 1.09003 * 109.50006 * 185.17447 * 4 2 1 31 31 H 1.09006 * 109.49872 * 305.24067 * 4 2 1 32 32 H 0.97000 * 120.00117 * 334.99648 * 7 5 4 33 33 H 1.08000 * 127.10899 * 359.97438 * 11 10 8 34 34 H 1.09005 * 109.46877 * 269.97305 * 14 13 12 35 35 H 1.08996 * 109.47902 * 29.97102 * 14 13 12 36 36 H 1.09001 * 109.47232 * 149.97383 * 14 13 12 37 37 H 1.09004 * 109.49619 * 178.68037 * 16 5 4 38 38 H 1.08995 * 109.49856 * 58.58842 * 16 5 4 39 39 H 1.09001 * 109.59004 * 294.84950 * 17 16 5 40 40 H 1.08997 * 109.59134 * 174.42154 * 17 16 5 41 41 H 0.97007 * 119.99487 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7288 1.2445 5 6 1.6473 -2.2043 1.1691 6 1 0.5624 -2.2839 1.0995 7 7 2.1109 -2.8976 2.3735 8 6 1.4864 -4.0172 2.7892 9 8 0.5381 -4.4516 2.1649 10 6 1.9545 -4.7169 4.0040 11 6 1.4156 -5.8870 4.5752 12 7 2.1502 -6.1390 5.6318 13 7 3.0547 -5.2323 5.7399 14 6 4.0567 -5.1848 6.8076 15 7 2.9650 -4.3728 4.7879 16 6 2.2857 -2.8448 -0.0655 17 6 1.7720 -2.1400 -1.3249 18 7 2.0226 -0.6980 -1.1953 19 6 2.7020 -0.0176 -2.1704 20 1 3.2656 0.8684 -1.9177 21 6 2.6662 -0.4666 -3.4833 22 7 1.7348 -1.3151 -3.8635 23 14 3.9401 0.1338 -4.7107 24 1 4.8708 1.0751 -4.0377 25 1 4.7043 -1.0253 -5.2378 26 1 3.2581 0.8283 -5.8322 27 1 -0.3633 -1.0276 0.0050 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5094 -0.8925 30 1 3.1326 -0.6476 1.2892 31 1 1.6110 -0.2788 2.1367 32 1 2.8675 -2.5508 2.8718 33 1 0.5731 -6.4593 4.2157 34 1 3.6681 -4.6053 7.6450 35 1 4.2816 -6.1981 7.1403 36 1 4.9660 -4.7157 6.4318 37 1 2.0201 -3.9012 -0.1058 38 1 3.3695 -2.7437 -0.0085 39 1 0.7017 -2.3167 -1.4317 40 1 2.2970 -2.5250 -2.1991 41 1 1.7096 -1.6286 -4.7812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947799592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:39 Heat of formation + Delta-G solvation = 71.520643 kcal Electronic energy + Delta-G solvation = -23728.814402 eV Core-core repulsion = 20260.200738 eV Total energy + Delta-G solvation = -3468.613664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.70623 -40.97292 -39.26534 -36.07289 -34.82504 -34.36151 -33.71576 -32.42720 -31.30893 -29.06860 -28.39974 -26.30528 -25.26084 -23.67177 -23.17993 -23.01044 -21.47540 -20.14712 -19.12818 -18.40975 -18.02471 -17.85038 -17.30795 -16.60512 -15.95713 -15.84219 -15.63646 -15.48797 -15.15590 -14.70244 -14.31856 -14.17307 -13.91962 -13.78713 -13.63829 -13.14664 -13.05762 -12.88155 -12.65196 -12.54350 -12.28133 -12.14355 -12.03557 -11.96763 -11.78109 -11.54947 -11.48665 -11.35840 -10.98177 -10.55409 -10.49447 -10.01921 -8.66608 -7.83555 -5.28004 0.19432 0.86214 1.26370 1.47845 1.50171 1.60182 2.05330 2.16377 2.53738 2.86446 3.32186 3.63543 3.73421 3.86331 4.01890 4.09623 4.30358 4.31014 4.32795 4.46402 4.48401 4.53920 4.67742 4.73148 4.77157 4.87543 4.88562 4.93634 5.09765 5.13651 5.19226 5.35627 5.47056 5.47487 5.53030 5.57991 5.71109 5.78844 6.43106 6.44485 7.01285 7.11790 7.18263 7.90298 8.42271 9.23167 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.003337 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.691941 B = 8387.871841 C = 8527.929082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.072 0.928 7 N -0.696 5.696 8 C 0.606 3.394 9 O -0.563 6.563 10 C -0.065 4.065 11 C 0.028 3.972 12 N -0.298 5.298 13 N -0.134 5.134 14 C 0.087 3.913 15 N -0.250 5.250 16 C -0.134 4.134 17 C 0.185 3.815 18 N -0.600 5.600 19 C -0.256 4.256 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.295 1.295 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.221 0.779 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.047 0.953 38 H 0.058 0.942 39 H -0.005 1.005 40 H 0.053 0.947 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -5.422 23.251 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.090 0.910 7 N -0.346 5.346 8 C 0.390 3.610 9 O -0.440 6.440 10 C -0.226 4.226 11 C -0.154 4.154 12 N -0.138 5.138 13 N -0.039 5.039 14 C -0.050 4.050 15 N -0.101 5.101 16 C -0.174 4.174 17 C 0.059 3.941 18 N -0.323 5.323 19 C -0.386 4.386 20 H 0.089 0.911 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.223 1.223 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.251 0.749 33 H 0.237 0.763 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.313 -5.709 23.651 24.903 hybrid contribution -0.050 0.083 -1.766 1.769 sum 5.263 -5.626 21.884 23.201 Atomic orbital electron populations 1.22189 0.98017 1.00474 1.00619 1.20695 0.92313 0.95472 0.86090 0.91138 1.22142 1.01902 0.92680 0.99050 1.20850 0.98728 0.92097 0.82648 0.91013 1.45926 1.34713 1.25851 1.28118 1.16883 0.81964 0.80301 0.81845 1.90811 1.29331 1.66767 1.57064 1.22876 0.98917 1.00648 1.00126 1.25136 1.01793 0.96508 0.91984 1.74031 1.02728 1.16203 1.20863 1.48664 1.22795 1.12975 1.19432 1.22817 0.88565 1.07853 0.85729 1.74324 1.18612 1.17374 0.99744 1.22350 1.00275 0.98521 0.96240 1.20420 0.95668 0.83573 0.94481 1.44400 1.64297 1.03606 1.19965 1.19561 1.21801 1.09902 0.87357 0.91061 1.25785 0.99544 1.00796 0.98652 1.70210 1.33668 1.37494 1.16763 0.85253 0.79135 0.77407 0.78921 1.18763 1.22105 1.22254 0.94478 0.90674 0.95191 0.90921 0.89032 0.74913 0.76271 0.86732 0.85679 0.85858 0.93454 0.92293 0.98735 0.92821 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 9.03 71.98 0.65 -5.12 16 2 C 0.16 6.28 3.28 44.97 0.15 6.43 16 3 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 4 C -0.12 -3.65 5.03 30.67 0.15 -3.50 16 5 C 0.16 5.47 2.21 45.02 0.10 5.57 16 6 H 0.07 2.75 5.94 -2.39 -0.01 2.73 16 7 N -0.70 -19.84 5.07 -445.33 -2.26 -22.10 16 8 C 0.61 18.81 7.79 86.77 0.68 19.49 16 9 O -0.56 -21.44 16.61 -3.89 -0.06 -21.50 16 10 C -0.06 -1.67 7.21 42.24 0.30 -1.37 16 11 C 0.03 0.65 12.04 85.46 1.03 1.68 16 12 N -0.30 -6.19 12.01 -56.16 -0.67 -6.86 16 13 N -0.13 -2.36 4.34 -206.54 -0.90 -3.26 16 14 C 0.09 0.49 11.55 127.77 1.48 1.96 16 15 N -0.25 -5.49 11.84 -48.16 -0.57 -6.06 16 16 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 17 C 0.19 9.22 4.90 86.36 0.42 9.65 16 18 N -0.60 -29.49 2.70 -675.24 -1.82 -31.31 16 19 C -0.26 -13.84 9.59 84.03 0.81 -13.03 16 20 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 21 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 22 N -0.94 -56.11 11.19 21.65 0.24 -55.87 16 23 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H 0.04 1.47 5.74 -2.39 -0.01 1.46 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.41 9.72 8.37 -92.71 -0.78 8.94 16 33 H 0.22 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H -0.01 -0.29 7.50 -2.39 -0.02 -0.31 16 40 H 0.05 3.04 6.04 -2.39 -0.01 3.03 16 41 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -72.84 336.92 2.61 -70.23 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.27 Total: 15.70 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.36 Total: 14.00 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -5.98 Total: -125.46 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.06 Total: -21.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.84 2.61 -70.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947799592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.748 kcal (2) G-P(sol) polarization free energy of solvation -72.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds