Wall clock time and date at job start Tue Mar 31 2020 03:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58554 * 2 1 4 4 C 1.53190 * 109.58868 * 239.57040 * 2 1 3 5 5 C 1.53037 * 109.31563 * 185.57835 * 4 2 1 6 6 H 1.09003 * 109.45963 * 301.34887 * 5 4 2 7 7 N 1.46495 * 109.46307 * 181.37139 * 5 4 2 8 8 C 1.34777 * 120.00113 * 155.00016 * 7 5 4 9 9 O 1.21278 * 119.99736 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00146 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47162 * 180.02562 * 10 8 7 12 12 N 1.33240 * 125.52260 * 269.68923 * 11 10 8 13 13 C 1.30838 * 109.82873 * 179.85607 * 12 11 10 14 14 N 1.34431 * 108.07140 * 0.40453 * 13 12 11 15 15 H 0.97007 * 126.82192 * 179.71148 * 14 13 12 16 16 N 1.30708 * 125.52598 * 90.00201 * 11 10 8 17 17 C 1.53045 * 109.53563 * 61.36325 * 5 4 2 18 18 C 1.53622 * 109.24433 * 298.51039 * 17 5 4 19 19 N 1.46930 * 108.53959 * 54.85990 * 18 17 5 20 20 C 1.36937 * 120.63201 * 126.36870 * 19 18 17 21 21 H 1.08000 * 119.99750 * 208.84929 * 20 19 18 22 22 C 1.38813 * 119.99747 * 29.12926 * 20 19 18 23 23 N 1.31620 * 120.00107 * 14.76315 * 22 20 19 24 24 Si 1.86803 * 119.99649 * 194.76823 * 22 20 19 25 25 H 1.48497 * 109.47306 * 89.99780 * 24 22 20 26 26 H 1.48503 * 109.47024 * 209.99718 * 24 22 20 27 27 H 1.48497 * 109.46954 * 329.99429 * 24 22 20 28 28 H 1.09004 * 109.46871 * 299.71914 * 1 2 3 29 29 H 1.09004 * 109.46729 * 59.71764 * 1 2 3 30 30 H 1.08993 * 109.47308 * 179.71651 * 1 2 3 31 31 H 1.09001 * 109.49706 * 305.53146 * 4 2 1 32 32 H 1.08998 * 109.49421 * 65.62826 * 4 2 1 33 33 H 0.97001 * 120.00095 * 334.99882 * 7 5 4 34 34 H 1.09003 * 109.47059 * 300.00320 * 10 8 7 35 35 H 1.09005 * 109.47208 * 59.99943 * 10 8 7 36 36 H 1.07998 * 125.96381 * 180.12759 * 13 12 11 37 37 H 1.08999 * 109.49613 * 58.58696 * 17 5 4 38 38 H 1.09001 * 109.49875 * 178.68400 * 17 5 4 39 39 H 1.08996 * 109.74167 * 295.12493 * 18 17 5 40 40 H 1.08997 * 109.66618 * 174.54708 * 18 17 5 41 41 H 0.97000 * 119.99976 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 1 4.0062 0.1460 -1.0994 7 7 4.0653 -1.5191 -2.3732 8 6 5.3295 -1.3062 -2.7889 9 8 6.0552 -0.5606 -2.1658 10 6 5.8413 -1.9945 -4.0279 11 6 7.2724 -1.5906 -4.2722 12 7 7.6691 -0.5517 -5.0061 13 6 8.9757 -0.4835 -5.0092 14 7 9.4482 -1.5023 -4.2702 15 1 10.3793 -1.7107 -4.0950 16 7 8.3259 -2.2059 -3.8031 17 6 3.9569 -1.6656 0.0657 18 6 3.4657 -0.9403 1.3277 19 7 2.0225 -0.6980 1.1954 20 6 1.1537 -1.1099 2.1704 21 1 0.1364 -1.3662 1.9140 22 6 1.5789 -1.1924 3.4893 23 7 2.7013 -0.6112 3.8564 24 14 0.5582 -2.1284 4.7428 25 1 0.9928 -3.5480 4.7744 26 1 0.7466 -1.5231 6.0858 27 1 -0.8762 -2.0580 4.3650 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5182 -0.8875 30 1 -0.3633 -1.0276 -0.0051 31 1 1.6030 -1.7270 -1.2891 32 1 1.7661 -0.1695 -2.1365 33 1 3.4849 -2.1157 -2.8713 34 1 5.7871 -3.0747 -3.8921 35 1 5.2306 -1.7048 -4.8831 36 1 9.5709 0.2587 -5.5202 37 1 3.4983 -2.6528 0.0088 38 1 5.0412 -1.7695 0.1061 39 1 3.9877 0.0108 1.4324 40 1 3.6532 -1.5608 2.2039 41 1 2.9987 -0.6692 4.7779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947909396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:58 Heat of formation + Delta-G solvation = 67.740667 kcal Electronic energy + Delta-G solvation = -23538.334216 eV Core-core repulsion = 20069.556640 eV Total energy + Delta-G solvation = -3468.777576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25916 -39.60377 -37.59907 -34.53487 -33.45044 -32.39191 -31.88815 -31.26068 -29.81568 -28.60709 -26.29455 -24.74233 -23.05342 -22.21765 -21.51638 -20.38225 -19.93957 -19.14250 -18.50948 -17.10099 -16.25548 -15.83559 -15.63289 -15.32148 -15.00519 -14.60733 -13.92786 -13.73859 -13.60729 -13.44410 -13.13847 -12.86315 -12.68652 -12.30751 -12.08074 -11.56152 -11.17646 -11.05708 -10.87916 -10.85398 -10.63289 -10.34782 -10.26654 -10.21865 -10.09600 -10.00475 -9.96654 -9.70629 -9.66264 -9.27532 -8.65458 -8.38283 -6.60847 -5.73216 -3.17655 1.44285 2.46546 2.65243 2.83877 3.39786 3.46717 3.47920 3.48948 3.93722 4.44598 4.52018 4.71351 4.95882 5.20680 5.32835 5.33457 5.42905 5.46838 5.65231 5.82727 6.01171 6.05228 6.19169 6.20301 6.30770 6.35386 6.46517 6.47833 6.56549 6.69652 6.82935 6.84856 6.95200 7.07282 7.13624 7.43655 7.72666 7.77253 7.85712 7.89847 8.45354 8.50924 9.26234 9.89834 10.46967 11.35161 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028952 B = 0.003239 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.872915 B = 8641.918580 C = 9201.820747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.080 0.920 7 N -0.723 5.723 8 C 0.518 3.482 9 O -0.531 6.531 10 C -0.051 4.051 11 C 0.252 3.748 12 N -0.535 5.535 13 C 0.261 3.739 14 N -0.485 5.485 15 H 0.441 0.559 16 N -0.303 5.303 17 C -0.147 4.147 18 C 0.175 3.825 19 N -0.588 5.588 20 C -0.250 4.250 21 H 0.071 0.929 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.396 0.604 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.222 0.778 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.020 0.980 40 H 0.090 0.910 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -2.712 -19.192 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.098 0.902 7 N -0.374 5.374 8 C 0.302 3.698 9 O -0.407 6.407 10 C -0.094 4.094 11 C -0.032 4.032 12 N -0.263 5.263 13 C -0.038 4.038 14 N -0.203 5.203 15 H 0.286 0.714 16 N -0.132 5.132 17 C -0.187 4.187 18 C 0.049 3.951 19 N -0.312 5.312 20 C -0.380 4.380 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.229 0.771 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.239 0.761 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.677 -2.548 -18.283 20.398 hybrid contribution 0.220 -0.690 0.487 0.872 sum 8.897 -3.238 -17.797 20.159 Atomic orbital electron populations 1.21795 0.95786 1.01361 1.00342 1.20364 0.93047 0.93582 0.86702 0.95590 1.22369 0.93681 1.01629 0.99620 1.21035 0.94190 0.96713 0.83196 0.90158 1.46238 1.12917 1.48826 1.29404 1.20092 0.82290 0.82038 0.85422 1.90742 1.56096 1.36944 1.56884 1.19939 0.88083 1.02496 0.98857 1.23314 0.95385 0.90800 0.93668 1.70351 1.10319 1.21432 1.24210 1.26052 0.91391 0.92550 0.93820 1.48077 1.09711 1.22735 1.39740 0.71359 1.77996 0.92688 1.20465 1.22100 1.22643 0.99683 0.99570 0.96820 1.20849 0.83126 0.97231 0.93937 1.44201 1.02972 1.65031 1.18963 1.19196 0.94914 1.37685 0.86171 0.91168 1.25111 0.97867 0.99728 0.97011 1.70017 1.23419 1.44490 1.16844 0.86306 0.79819 0.79716 0.81006 1.21542 1.21849 1.20473 0.91888 0.94290 0.92794 0.91762 0.92632 0.77084 0.86592 0.86156 0.76147 0.92639 0.93004 0.96226 0.89157 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.20 16 2 C 0.17 3.50 3.49 -67.60 -0.24 3.26 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.35 16 5 C 0.15 2.69 2.41 -67.89 -0.16 2.53 16 6 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 7 N -0.72 -10.12 5.08 -53.77 -0.27 -10.39 16 8 C 0.52 7.92 7.79 -10.99 -0.09 7.84 16 9 O -0.53 -10.75 15.70 5.56 0.09 -10.67 16 10 C -0.05 -0.58 6.33 -29.04 -0.18 -0.76 16 11 C 0.25 3.44 6.63 -156.86 -1.04 2.40 16 12 N -0.54 -6.95 11.19 -11.98 -0.13 -7.08 16 13 C 0.26 2.30 13.13 -90.65 -1.19 1.11 16 14 N -0.48 -4.45 7.45 29.53 0.22 -4.23 16 15 H 0.44 2.25 8.96 -182.33 -1.63 0.61 16 16 N -0.30 -4.12 12.80 32.42 0.41 -3.71 16 17 C -0.15 -2.99 5.67 -26.38 -0.15 -3.14 16 18 C 0.17 4.31 5.31 -3.48 -0.02 4.29 16 19 N -0.59 -14.54 2.98 -164.51 -0.49 -15.03 16 20 C -0.25 -6.69 8.60 -15.06 -0.13 -6.82 16 21 H 0.07 1.82 6.21 -52.49 -0.33 1.49 16 22 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 23 N -0.90 -26.48 11.13 55.49 0.62 -25.86 16 24 Si 0.90 21.71 29.58 -169.99 -5.03 16.69 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 34 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -36.87 336.45 -9.80 -46.67 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.16 Total: 2.44 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -3.12 Total: 6.10 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: 0.35 Total: -66.30 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.87 -9.80 -46.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947909396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.410 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds