Wall clock time and date at job start Tue Mar 31 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58457 * 2 1 4 4 C 1.53193 * 109.59029 * 120.28696 * 2 1 3 5 5 C 1.53039 * 109.31414 * 174.42450 * 4 2 1 6 6 H 1.08999 * 109.46072 * 58.63387 * 5 4 2 7 7 N 1.46500 * 109.46102 * 178.61362 * 5 4 2 8 8 C 1.34770 * 119.99597 * 204.99547 * 7 5 4 9 9 O 1.21282 * 120.00648 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99499 * 180.27426 * 8 7 5 11 11 C 1.50695 * 109.47039 * 179.72763 * 10 8 7 12 12 N 1.33247 * 125.52847 * 269.69539 * 11 10 8 13 13 C 1.30831 * 109.83196 * 179.85796 * 12 11 10 14 14 N 1.34432 * 108.07405 * 0.39741 * 13 12 11 15 15 H 0.97000 * 126.81962 * 179.72106 * 14 13 12 16 16 N 1.30712 * 125.52970 * 90.00247 * 11 10 8 17 17 C 1.53045 * 109.53562 * 298.63622 * 5 4 2 18 18 C 1.53187 * 109.31602 * 61.36317 * 17 5 4 19 19 N 1.46929 * 108.77821 * 305.36586 * 18 17 5 20 20 C 1.36934 * 120.63282 * 233.58565 * 19 18 17 21 21 H 1.07999 * 119.99926 * 150.87226 * 20 19 18 22 22 C 1.38809 * 120.00036 * 330.86687 * 20 19 18 23 23 N 1.31616 * 120.00129 * 343.82085 * 22 20 19 24 24 Si 1.86801 * 120.00042 * 163.81176 * 22 20 19 25 25 H 1.48494 * 109.47037 * 94.31158 * 24 22 20 26 26 H 1.48499 * 109.47442 * 214.31551 * 24 22 20 27 27 H 1.48508 * 109.47131 * 334.31527 * 24 22 20 28 28 H 1.09009 * 109.46900 * 299.70749 * 1 2 3 29 29 H 1.08996 * 109.47560 * 59.71126 * 1 2 3 30 30 H 1.09002 * 109.47127 * 179.71856 * 1 2 3 31 31 H 1.08992 * 109.49555 * 54.46971 * 4 2 1 32 32 H 1.09003 * 109.51835 * 294.38829 * 4 2 1 33 33 H 0.96995 * 119.99767 * 24.99912 * 7 5 4 34 34 H 1.08995 * 109.47208 * 299.72574 * 10 8 7 35 35 H 1.08997 * 109.47052 * 59.73119 * 10 8 7 36 36 H 1.07994 * 125.96249 * 180.19687 * 13 12 11 37 37 H 1.09000 * 109.49680 * 181.31754 * 17 5 4 38 38 H 1.09006 * 109.49494 * 301.41187 * 17 5 4 39 39 H 1.09002 * 109.58893 * 185.57838 * 18 17 5 40 40 H 1.09005 * 109.58555 * 65.15244 * 18 17 5 41 41 H 0.97003 * 120.00193 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5676 -0.8465 1.1711 6 1 4.0061 0.1488 1.0987 7 7 4.0653 -1.5128 2.3771 8 6 5.3296 -1.2986 2.7921 9 8 6.0550 -0.5540 2.1675 10 6 5.8436 -1.9889 4.0293 11 6 7.2761 -1.5878 4.2697 12 7 8.3477 -2.2201 3.7928 13 6 9.4355 -1.6095 4.1872 14 7 9.0732 -0.5602 4.9455 15 1 9.6640 0.0747 5.3797 16 7 7.6693 -0.5666 4.9846 17 6 3.9569 -1.6657 -0.0616 18 6 3.4650 -0.9485 -1.3227 19 7 2.0225 -0.7010 -1.1937 20 6 1.1536 -1.1153 -2.1677 21 1 0.1364 -1.3712 -1.9105 22 6 1.5803 -1.2062 -3.4854 23 7 2.6906 -0.6071 -3.8605 24 14 0.5788 -2.1789 -4.7265 25 1 -0.3434 -1.2633 -5.4449 26 1 1.4926 -2.8265 -5.7015 27 1 -0.2091 -3.2204 -4.0194 28 1 -0.3633 0.5093 0.8927 29 1 -0.3634 0.5183 -0.8873 30 1 -0.3633 -1.0277 -0.0050 31 1 1.6031 -1.7237 1.2934 32 1 1.7661 -0.1647 2.1373 33 1 3.4850 -2.1080 2.8769 34 1 5.2362 -1.6982 4.8864 35 1 5.7866 -3.0688 3.8930 36 1 10.4479 -1.8999 3.9483 37 1 5.0412 -1.7696 -0.1017 38 1 3.4983 -2.6528 -0.0021 39 1 3.6517 -1.5743 -2.1954 40 1 3.9902 0.0004 -1.4318 41 1 2.9890 -0.6710 -4.7813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947909397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:00 Heat of formation + Delta-G solvation = 67.852681 kcal Electronic energy + Delta-G solvation = -23539.382856 eV Core-core repulsion = 20070.610137 eV Total energy + Delta-G solvation = -3468.772718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25964 -39.60835 -37.60736 -34.53371 -33.45242 -32.38808 -31.89301 -31.27979 -29.82312 -28.61005 -26.30457 -24.73415 -23.05027 -22.22287 -21.52046 -20.38061 -19.94021 -19.14219 -18.50727 -17.10208 -16.24846 -15.93377 -15.50796 -15.31773 -15.01192 -14.64618 -13.94298 -13.73620 -13.57460 -13.45705 -13.13757 -12.86953 -12.69567 -12.31458 -12.08056 -11.56084 -11.17937 -11.06533 -10.89352 -10.84718 -10.61037 -10.34828 -10.28005 -10.21132 -10.09612 -10.00643 -9.96852 -9.69844 -9.66357 -9.27279 -8.65432 -8.37846 -6.60277 -5.73340 -3.16688 1.43663 2.46033 2.65752 2.83536 3.39674 3.47483 3.48348 3.49430 3.94386 4.44264 4.52633 4.72007 4.95606 5.19777 5.32759 5.33929 5.42838 5.46937 5.64668 5.82521 6.00994 6.05011 6.18960 6.20264 6.30571 6.35210 6.46312 6.48308 6.56380 6.69704 6.82643 6.85750 6.95139 7.07118 7.13516 7.43256 7.71703 7.76700 7.86349 7.90227 8.45070 8.50917 9.26280 9.90356 10.47598 11.35382 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.003247 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.824443 B = 8621.793183 C = 9185.511335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.080 0.920 7 N -0.723 5.723 8 C 0.518 3.482 9 O -0.531 6.531 10 C -0.051 4.051 11 C 0.253 3.747 12 N -0.534 5.534 13 C 0.262 3.738 14 N -0.485 5.485 15 H 0.441 0.559 16 N -0.306 5.306 17 C -0.146 4.146 18 C 0.175 3.825 19 N -0.588 5.588 20 C -0.251 4.251 21 H 0.070 0.930 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.899 3.101 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.223 0.777 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.019 0.981 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -3.066 18.980 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.098 0.902 7 N -0.374 5.374 8 C 0.302 3.698 9 O -0.407 6.407 10 C -0.094 4.094 11 C -0.031 4.031 12 N -0.261 5.261 13 C -0.037 4.037 14 N -0.203 5.203 15 H 0.286 0.714 16 N -0.135 5.135 17 C -0.187 4.187 18 C 0.049 3.951 19 N -0.311 5.311 20 C -0.381 4.381 21 H 0.088 0.912 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.729 3.271 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.229 0.771 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.239 0.761 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.655 -2.355 18.479 20.541 hybrid contribution 0.103 -0.392 -0.272 0.489 sum 8.758 -2.747 18.207 20.389 Atomic orbital electron populations 1.21794 0.95794 1.01424 1.00269 1.20354 0.93046 0.93558 0.86699 0.95643 1.22376 0.93696 1.01652 0.99615 1.21034 0.94169 0.96738 0.83193 0.90196 1.46234 1.12931 1.48970 1.29243 1.20093 0.82247 0.81998 0.85503 1.90744 1.56069 1.37064 1.56790 1.19940 0.87789 1.03074 0.98578 1.23317 0.95774 0.90283 0.93705 1.70367 0.96970 1.31968 1.26833 1.26067 1.00379 0.86019 0.91260 1.48068 1.05916 1.25332 1.41005 0.71397 1.77963 0.88359 1.21655 1.25555 1.22564 0.99788 0.99567 0.96753 1.20735 0.83191 0.97271 0.93911 1.44178 1.03004 1.64818 1.19113 1.19160 0.94888 1.37762 0.86246 0.91247 1.25091 0.97911 0.99695 0.96955 1.70034 1.24107 1.43751 1.16703 0.86333 0.79352 0.80019 0.81364 1.21554 1.21646 1.20465 0.94320 0.91917 0.92739 0.91739 0.92683 0.77075 0.86660 0.86081 0.76122 0.92864 0.92609 0.89349 0.96256 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.94 37.16 0.30 -2.20 16 2 C 0.17 3.51 3.50 -67.60 -0.24 3.27 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.15 2.69 2.42 -67.89 -0.16 2.52 16 6 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 7 N -0.72 -10.10 5.08 -53.76 -0.27 -10.37 16 8 C 0.52 7.91 7.79 -10.98 -0.09 7.82 16 9 O -0.53 -10.74 15.70 5.56 0.09 -10.65 16 10 C -0.05 -0.58 6.33 -29.03 -0.18 -0.76 16 11 C 0.25 3.44 6.63 -156.85 -1.04 2.40 16 12 N -0.53 -7.08 11.19 -11.98 -0.13 -7.21 16 13 C 0.26 2.35 13.13 -90.65 -1.19 1.16 16 14 N -0.49 -4.39 7.45 29.53 0.22 -4.17 16 15 H 0.44 2.15 8.96 -182.34 -1.63 0.52 16 16 N -0.31 -4.07 12.80 32.42 0.41 -3.65 16 17 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 18 C 0.18 4.31 5.29 -3.71 -0.02 4.29 16 19 N -0.59 -14.53 2.99 -164.77 -0.49 -15.02 16 20 C -0.25 -6.72 8.60 -15.06 -0.13 -6.85 16 21 H 0.07 1.80 6.21 -52.49 -0.33 1.47 16 22 C 0.00 0.06 4.93 -17.43 -0.09 -0.03 16 23 N -0.90 -26.44 11.22 55.49 0.62 -25.82 16 24 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 30 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.42 6.11 -51.93 -0.32 2.11 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -36.91 336.53 -9.80 -46.71 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.17 Total: 2.33 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.12 Total: 6.15 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 0.36 Total: -66.24 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.91 -9.80 -46.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947909397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.562 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds