Wall clock time and date at job start Tue Mar 31 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58457 * 2 1 4 4 C 1.53193 * 109.59029 * 120.28696 * 2 1 3 5 5 C 1.53039 * 109.31414 * 174.42450 * 4 2 1 6 6 H 1.08999 * 109.46072 * 58.63387 * 5 4 2 7 7 N 1.46500 * 109.46102 * 178.61362 * 5 4 2 8 8 C 1.34770 * 119.99597 * 204.99547 * 7 5 4 9 9 O 1.21282 * 120.00648 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99499 * 180.27426 * 8 7 5 11 11 C 1.50695 * 109.47039 * 179.72763 * 10 8 7 12 12 N 1.33247 * 125.52847 * 269.69539 * 11 10 8 13 13 C 1.30831 * 109.83196 * 179.85796 * 12 11 10 14 14 N 1.34432 * 108.07405 * 0.39741 * 13 12 11 15 15 H 0.97000 * 126.81962 * 179.72106 * 14 13 12 16 16 N 1.30712 * 125.52970 * 90.00247 * 11 10 8 17 17 C 1.53045 * 109.53562 * 298.63622 * 5 4 2 18 18 C 1.53187 * 109.31602 * 61.36317 * 17 5 4 19 19 N 1.46929 * 108.77821 * 305.36586 * 18 17 5 20 20 C 1.36934 * 120.63282 * 233.58565 * 19 18 17 21 21 H 1.07999 * 119.99926 * 150.87226 * 20 19 18 22 22 C 1.38809 * 120.00036 * 330.86687 * 20 19 18 23 23 N 1.31616 * 120.00129 * 343.82085 * 22 20 19 24 24 Si 1.86801 * 120.00042 * 163.81176 * 22 20 19 25 25 H 1.48494 * 109.47037 * 94.31158 * 24 22 20 26 26 H 1.48499 * 109.47442 * 214.31551 * 24 22 20 27 27 H 1.48508 * 109.47131 * 334.31527 * 24 22 20 28 28 H 1.09009 * 109.46900 * 299.70749 * 1 2 3 29 29 H 1.08996 * 109.47560 * 59.71126 * 1 2 3 30 30 H 1.09002 * 109.47127 * 179.71856 * 1 2 3 31 31 H 1.08992 * 109.49555 * 54.46971 * 4 2 1 32 32 H 1.09003 * 109.51835 * 294.38829 * 4 2 1 33 33 H 0.96995 * 119.99767 * 24.99912 * 7 5 4 34 34 H 1.08995 * 109.47208 * 299.72574 * 10 8 7 35 35 H 1.08997 * 109.47052 * 59.73119 * 10 8 7 36 36 H 1.07994 * 125.96249 * 180.19687 * 13 12 11 37 37 H 1.09000 * 109.49680 * 181.31754 * 17 5 4 38 38 H 1.09006 * 109.49494 * 301.41187 * 17 5 4 39 39 H 1.09002 * 109.58893 * 185.57838 * 18 17 5 40 40 H 1.09005 * 109.58555 * 65.15244 * 18 17 5 41 41 H 0.97003 * 120.00193 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5676 -0.8465 1.1711 6 1 4.0061 0.1488 1.0987 7 7 4.0653 -1.5128 2.3771 8 6 5.3296 -1.2986 2.7921 9 8 6.0550 -0.5540 2.1675 10 6 5.8436 -1.9889 4.0293 11 6 7.2761 -1.5878 4.2697 12 7 8.3477 -2.2201 3.7928 13 6 9.4355 -1.6095 4.1872 14 7 9.0732 -0.5602 4.9455 15 1 9.6640 0.0747 5.3797 16 7 7.6693 -0.5666 4.9846 17 6 3.9569 -1.6657 -0.0616 18 6 3.4650 -0.9485 -1.3227 19 7 2.0225 -0.7010 -1.1937 20 6 1.1536 -1.1153 -2.1677 21 1 0.1364 -1.3712 -1.9105 22 6 1.5803 -1.2062 -3.4854 23 7 2.6906 -0.6071 -3.8605 24 14 0.5788 -2.1789 -4.7265 25 1 -0.3434 -1.2633 -5.4449 26 1 1.4926 -2.8265 -5.7015 27 1 -0.2091 -3.2204 -4.0194 28 1 -0.3633 0.5093 0.8927 29 1 -0.3634 0.5183 -0.8873 30 1 -0.3633 -1.0277 -0.0050 31 1 1.6031 -1.7237 1.2934 32 1 1.7661 -0.1647 2.1373 33 1 3.4850 -2.1080 2.8769 34 1 5.2362 -1.6982 4.8864 35 1 5.7866 -3.0688 3.8930 36 1 10.4479 -1.8999 3.9483 37 1 5.0412 -1.7696 -0.1017 38 1 3.4983 -2.6528 -0.0021 39 1 3.6517 -1.5743 -2.1954 40 1 3.9902 0.0004 -1.4318 41 1 2.9890 -0.6710 -4.7813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947909397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:00 Heat of formation + Delta-G solvation = 40.615476 kcal Electronic energy + Delta-G solvation = -23540.563949 eV Core-core repulsion = 20070.610137 eV Total energy + Delta-G solvation = -3469.953812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.06028 -40.92882 -39.22676 -36.08982 -34.37678 -34.15926 -33.04008 -32.61245 -31.42648 -29.76440 -27.88520 -26.61355 -24.03314 -23.66540 -22.92360 -21.68082 -21.28455 -20.65495 -19.27052 -18.45041 -17.97860 -17.29514 -16.82149 -16.47316 -16.19653 -15.75549 -15.68504 -15.49512 -14.97138 -14.78227 -14.54704 -14.35737 -14.23248 -13.31836 -13.17149 -13.03517 -12.93066 -12.69138 -12.67801 -12.58088 -12.32526 -12.07619 -11.83039 -11.70251 -11.48096 -11.34745 -11.17668 -11.06775 -10.92019 -10.56736 -10.53869 -9.98250 -8.63968 -7.82385 -5.28551 0.65271 1.48243 1.50085 1.59629 1.66009 1.72632 1.86681 2.40128 2.54380 3.19049 3.34068 3.60354 3.68825 3.85185 3.96223 4.09814 4.18930 4.29930 4.41876 4.46913 4.59554 4.63851 4.73903 4.77748 4.85935 4.97963 5.10860 5.13003 5.18416 5.25049 5.36357 5.40752 5.50741 5.57077 5.60022 5.72089 5.74699 6.27172 6.44314 6.63360 7.10945 7.18194 7.32992 7.90396 8.43654 9.25276 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.003247 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.824443 B = 8621.793183 C = 9185.511335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.007 0.993 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.049 0.951 7 N -0.705 5.705 8 C 0.516 3.484 9 O -0.587 6.587 10 C -0.043 4.043 11 C 0.232 3.768 12 N -0.577 5.577 13 C 0.273 3.727 14 N -0.476 5.476 15 H 0.457 0.543 16 N -0.340 5.340 17 C -0.129 4.129 18 C 0.184 3.816 19 N -0.603 5.603 20 C -0.248 4.248 21 H 0.082 0.918 22 C -0.059 4.059 23 N -0.942 5.942 24 Si 0.964 3.036 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.264 1.264 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.419 0.581 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.271 0.729 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.054 0.946 40 H -0.018 1.018 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -4.498 21.724 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.025 0.975 4 C -0.156 4.156 5 C 0.058 3.942 6 H 0.068 0.932 7 N -0.357 5.357 8 C 0.302 3.698 9 O -0.466 6.466 10 C -0.084 4.084 11 C -0.051 4.051 12 N -0.306 5.306 13 C -0.025 4.025 14 N -0.195 5.195 15 H 0.306 0.694 16 N -0.170 5.170 17 C -0.170 4.170 18 C 0.057 3.943 19 N -0.327 5.327 20 C -0.378 4.378 21 H 0.100 0.900 22 C -0.253 4.253 23 N -0.589 5.589 24 Si 0.793 3.207 25 H -0.215 1.215 26 H -0.225 1.225 27 H -0.188 1.188 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.257 0.743 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.287 0.713 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.001 0.999 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.694 -3.800 21.307 22.970 hybrid contribution 0.490 0.140 -1.075 1.190 sum 8.184 -3.660 20.231 22.129 Atomic orbital electron populations 1.21710 0.93739 1.01815 1.01110 1.20658 0.94820 0.92754 0.86624 0.97513 1.22177 0.92215 1.02483 0.98724 1.20616 0.95054 0.94953 0.83568 0.93246 1.45900 1.13138 1.48796 1.27903 1.20829 0.81756 0.81058 0.86109 1.90726 1.57527 1.39604 1.58779 1.20020 0.87262 1.03939 0.97226 1.23719 0.96813 0.90576 0.94027 1.70351 0.98072 1.33681 1.28516 1.26998 1.01432 0.84766 0.89331 1.48011 1.04910 1.25764 1.40859 0.69395 1.77840 0.90574 1.22123 1.26513 1.22294 0.98785 0.99766 0.96118 1.20424 0.83729 0.95231 0.94884 1.44443 1.02556 1.65519 1.20164 1.19574 0.95436 1.36187 0.86627 0.90037 1.25893 0.99178 1.01220 0.99035 1.70219 1.26227 1.45920 1.16562 0.85300 0.77744 0.78774 0.78889 1.21509 1.22544 1.18815 0.90362 0.94299 0.92404 0.90148 0.89072 0.74309 0.83396 0.83500 0.71315 0.94143 0.91594 0.92790 0.99949 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.94 71.98 0.57 -3.78 16 2 C 0.16 6.32 3.50 44.97 0.16 6.48 16 3 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 4 C -0.12 -3.57 4.84 30.67 0.15 -3.42 16 5 C 0.16 5.62 2.42 45.02 0.11 5.73 16 6 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 7 N -0.71 -18.05 5.08 -442.40 -2.25 -20.30 16 8 C 0.52 15.10 7.79 87.66 0.68 15.79 16 9 O -0.59 -24.05 15.70 -3.04 -0.05 -24.10 16 10 C -0.04 -0.86 6.33 29.10 0.18 -0.68 16 11 C 0.23 6.03 6.63 138.63 0.92 6.95 16 12 N -0.58 -14.57 11.19 -191.81 -2.15 -16.71 16 13 C 0.27 4.34 13.13 180.36 2.37 6.71 16 14 N -0.48 -7.86 7.45 -60.49 -0.45 -8.31 16 15 H 0.46 3.68 8.96 -213.10 -1.91 1.77 16 16 N -0.34 -8.67 12.80 -51.34 -0.66 -9.33 16 17 C -0.13 -5.33 5.65 30.67 0.17 -5.16 16 18 C 0.18 9.50 5.29 86.36 0.46 9.96 16 19 N -0.60 -30.23 2.99 -675.22 -2.02 -32.25 16 20 C -0.25 -13.35 8.60 84.03 0.72 -12.62 16 21 H 0.08 4.13 6.21 -2.91 -0.02 4.11 16 22 C -0.06 -3.32 4.93 84.86 0.42 -2.91 16 23 N -0.94 -57.78 11.22 21.65 0.24 -57.54 16 24 Si 0.96 45.24 29.58 68.60 2.03 47.27 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 27 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.04 1.50 7.66 -2.39 -0.02 1.48 16 30 H 0.06 1.95 7.40 -2.39 -0.02 1.93 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.42 6.98 8.60 -92.71 -0.80 6.18 16 34 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.27 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.05 3.13 6.11 -2.39 -0.01 3.12 16 40 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -85.65 336.53 -0.02 -85.67 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -1.64 Total: 12.54 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 6.91 Total: 23.05 kcal Atomic # 7 Polarization: -137.16 SS G_CDS: -7.27 Total: -144.43 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -85.65 -0.02 -85.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947909397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.288 kcal (2) G-P(sol) polarization free energy of solvation -85.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds