Wall clock time and date at job start Tue Mar 31 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35540 * 125.67317 * 2 1 4 4 C 1.35451 * 108.87266 * 179.97438 * 3 2 1 5 5 C 1.39840 * 107.86423 * 359.74087 * 4 3 2 6 6 C 1.37650 * 125.68333 * 179.97438 * 2 1 3 7 7 C 1.46677 * 126.22967 * 0.02562 * 6 2 1 8 8 O 1.21692 * 120.00252 * 4.10708 * 7 6 2 9 9 N 1.34781 * 119.99477 * 184.10756 * 7 6 2 10 10 C 1.46508 * 119.99573 * 174.84910 * 9 7 6 11 11 C 1.52997 * 109.46704 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.63951 * 303.30986 * 11 10 9 13 13 C 1.54329 * 110.72364 * 66.45281 * 11 10 9 14 14 N 1.47020 * 107.39864 * 140.47782 * 13 11 10 15 15 C 1.36933 * 125.64569 * 181.10618 * 14 13 11 16 16 H 1.08007 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00315 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00169 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47026 * 89.99733 * 19 17 15 21 21 H 1.48498 * 109.47044 * 210.00046 * 19 17 15 22 22 H 1.48497 * 109.47043 * 329.99771 * 19 17 15 23 23 C 1.47749 * 108.53213 * 1.17937 * 14 13 11 24 24 C 1.54906 * 104.84144 * 335.75409 * 23 14 13 25 25 H 1.08997 * 111.03712 * 155.18042 * 24 23 14 26 26 O 1.42902 * 111.00398 * 279.01648 * 24 23 14 27 27 H 1.08995 * 109.47136 * 265.08812 * 1 2 3 28 28 H 1.08997 * 109.47698 * 25.09623 * 1 2 3 29 29 H 1.09007 * 109.46922 * 145.09294 * 1 2 3 30 30 H 1.08002 * 125.56197 * 359.95430 * 3 2 1 31 31 H 1.08001 * 126.06964 * 179.97438 * 4 3 2 32 32 H 1.08000 * 126.46377 * 180.25975 * 5 4 3 33 33 H 0.96996 * 120.00375 * 354.85168 * 9 7 6 34 34 H 1.09001 * 109.46975 * 59.99866 * 10 9 7 35 35 H 1.08997 * 109.46852 * 300.00167 * 10 9 7 36 36 H 1.08993 * 109.87762 * 259.97307 * 13 11 10 37 37 H 1.08995 * 109.87744 * 20.98427 * 13 11 10 38 38 H 0.96998 * 119.99877 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.28610 * 216.94675 * 23 14 13 40 40 H 1.08996 * 110.52305 * 94.68244 * 23 14 13 41 41 H 0.96699 * 114.00202 * 292.20136 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5521 0.7096 0.0006 5 6 3.5781 -0.6886 0.0070 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6244 -2.7645 -0.0753 9 7 2.7101 -3.5143 0.0847 10 6 2.2513 -4.9010 0.1986 11 6 3.4615 -5.8336 0.2781 12 1 4.1098 -5.6965 -0.5874 13 6 4.2438 -5.6027 1.5883 14 7 4.6730 -6.9194 2.0819 15 6 5.3769 -7.1491 3.2338 16 1 5.6636 -6.3214 3.8657 17 6 5.7219 -8.4458 3.5895 18 7 5.3720 -9.4544 2.8198 19 14 6.6828 -8.7590 5.1605 20 1 5.7368 -8.9669 6.2862 21 1 7.5256 -9.9700 4.9921 22 1 7.5498 -7.5892 5.4521 23 6 4.2187 -7.9502 1.1259 24 6 3.0079 -7.3124 0.4002 25 1 2.8617 -7.7587 -0.5834 26 8 1.8220 -7.4208 1.1902 27 1 -0.3633 -0.0880 1.0238 28 1 -0.3634 0.9306 -0.4358 29 1 -0.3633 -0.8428 -0.5881 30 1 1.9080 2.1237 -0.0007 31 1 4.4132 1.3615 0.0003 32 1 4.4584 -1.3142 0.0129 33 1 3.6597 -3.3173 0.0699 34 1 1.6508 -5.1579 -0.6741 35 1 1.6482 -5.0113 1.0998 36 1 5.1152 -4.9774 1.3943 37 1 3.5996 -5.1226 2.3248 38 1 5.6134 -10.3605 3.0682 39 1 3.9109 -8.8501 1.6585 40 1 5.0086 -8.1842 0.4123 41 1 1.5004 -8.3267 1.2947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957891010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:34 Heat of formation + Delta-G solvation = -4.025914 kcal Electronic energy + Delta-G solvation = -23506.641546 eV Core-core repulsion = 20002.459187 eV Total energy + Delta-G solvation = -3504.182359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43244 -39.18782 -38.07019 -34.93911 -34.52053 -33.00599 -32.11952 -30.24173 -28.95364 -27.60661 -26.61776 -25.48424 -23.79023 -22.19103 -20.66202 -20.39977 -19.82034 -19.24867 -17.92322 -17.29414 -16.38547 -15.90339 -15.72479 -15.33932 -14.85847 -14.73322 -14.14097 -14.05579 -13.80387 -13.50905 -13.35260 -13.12574 -12.70027 -12.51540 -12.41307 -12.29908 -12.11964 -11.91796 -11.35755 -11.23376 -10.79059 -10.65291 -10.36283 -10.22779 -10.01761 -9.82773 -9.76553 -9.10394 -8.94950 -8.86391 -8.67778 -8.30288 -6.83347 -5.68358 -3.07935 1.42889 2.55895 2.64021 3.39554 3.40066 3.44958 3.46443 3.46630 4.47292 4.64715 4.71378 4.80889 4.84425 5.09100 5.15886 5.27626 5.29591 5.33097 5.42068 5.47533 5.52493 5.62345 5.91355 5.93956 6.02881 6.09120 6.13431 6.34925 6.44624 6.50907 6.61509 6.70486 6.86066 6.87357 7.07266 7.28259 7.58300 7.60768 7.75650 8.23527 8.27364 8.37817 9.18998 9.80728 10.45153 11.36949 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.003439 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.208668 B = 8138.806505 C = 8928.938421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.412 5.412 3 C 0.009 3.991 4 C -0.208 4.208 5 C -0.142 4.142 6 C -0.049 4.049 7 C 0.586 3.414 8 O -0.555 6.555 9 N -0.713 5.713 10 C 0.143 3.857 11 C -0.107 4.107 12 H 0.086 0.914 13 C 0.144 3.856 14 N -0.598 5.598 15 C -0.217 4.217 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.926 5.926 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.126 3.874 24 C 0.083 3.917 25 H 0.055 0.945 26 O -0.558 6.558 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.020 0.980 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.726 16.283 -8.754 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.085 5.085 3 C -0.127 4.127 4 C -0.232 4.232 5 C -0.168 4.168 6 C -0.163 4.163 7 C 0.374 3.626 8 O -0.435 6.435 9 N -0.364 5.364 10 C 0.020 3.980 11 C -0.126 4.126 12 H 0.105 0.895 13 C 0.018 3.982 14 N -0.323 5.323 15 C -0.346 4.346 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.000 4.000 24 C 0.022 3.978 25 H 0.073 0.927 26 O -0.363 6.363 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.803 16.526 -8.626 20.209 hybrid contribution 1.052 -0.588 0.754 1.422 sum -6.752 15.938 -7.872 19.015 Atomic orbital electron populations 1.22244 0.76182 1.04684 1.04239 1.43857 1.06804 1.05023 1.52831 1.22005 0.90778 0.91425 1.08450 1.20824 0.95975 0.95057 1.11340 1.21404 0.94549 0.95547 1.05298 1.20157 0.90473 0.87728 1.17902 1.16968 0.85683 0.83473 0.76524 1.90767 1.16303 1.84993 1.51435 1.45771 1.09766 1.06815 1.74016 1.21261 0.96359 0.77649 1.02722 1.22514 0.96022 0.94375 0.99675 0.89533 1.21307 0.94954 0.89817 0.92123 1.44407 1.64404 0.99983 1.23544 1.19091 1.25907 0.92643 0.96939 0.90449 1.24758 1.01481 0.95455 0.99074 1.69742 1.51474 0.98405 1.37891 0.86052 0.79300 0.77365 0.82679 1.21604 1.21692 1.20733 1.22631 0.91067 0.94895 0.91359 1.23186 0.87256 0.94410 0.92930 0.92738 1.86391 1.42823 1.32472 1.74615 0.90610 0.90026 0.88036 0.81566 0.84031 0.83746 0.76279 0.91643 0.90054 0.96264 0.95377 0.93773 0.87092 0.96241 0.77819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.49 59.85 0.63 1.26 16 2 N -0.41 -4.78 3.16 -120.24 -0.38 -5.16 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.21 -2.11 10.81 -39.98 -0.43 -2.55 16 5 C -0.14 -1.65 10.36 -39.11 -0.41 -2.05 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.22 16 7 C 0.59 9.02 7.78 -12.85 -0.10 8.92 16 8 O -0.55 -9.94 14.77 5.20 0.08 -9.86 16 9 N -0.71 -10.18 5.38 -61.62 -0.33 -10.52 16 10 C 0.14 2.29 4.59 -4.04 -0.02 2.28 16 11 C -0.11 -1.81 2.95 -88.78 -0.26 -2.07 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.14 2.98 6.52 -3.06 -0.02 2.96 16 14 N -0.60 -15.17 3.40 -169.82 -0.58 -15.75 16 15 C -0.22 -6.07 10.28 -15.06 -0.15 -6.22 16 16 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 18 N -0.93 -26.55 10.11 55.49 0.56 -25.99 16 19 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.94 5.65 -2.35 -0.01 2.92 16 24 C 0.08 1.52 4.17 -24.58 -0.10 1.42 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 O -0.56 -10.32 12.22 -35.23 -0.43 -10.75 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.10 1.13 6.52 -51.93 -0.34 0.79 16 30 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.42 7.44 -52.49 -0.39 1.02 16 33 H 0.40 4.94 7.22 -40.82 -0.29 4.65 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.52 7.44 -51.93 -0.39 1.14 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.62 7.76 -51.93 -0.40 0.21 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.11 2.91 5.88 -51.93 -0.31 2.60 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.37 5.66 9.12 45.56 0.42 6.07 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -34.02 337.85 -7.80 -41.82 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.05 Total: 8.98 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.73 Total: 5.08 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.73 Total: -57.42 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.35 Total: -20.61 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.02 -7.80 -41.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.795 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds