Wall clock time and date at job start Tue Mar 31 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35540 * 125.67317 * 2 1 4 4 C 1.35451 * 108.87266 * 179.97438 * 3 2 1 5 5 C 1.39840 * 107.86423 * 359.74087 * 4 3 2 6 6 C 1.37650 * 125.68333 * 179.97438 * 2 1 3 7 7 C 1.46677 * 126.22967 * 0.02562 * 6 2 1 8 8 O 1.21692 * 120.00252 * 4.10708 * 7 6 2 9 9 N 1.34781 * 119.99477 * 184.10756 * 7 6 2 10 10 C 1.46508 * 119.99573 * 174.84910 * 9 7 6 11 11 C 1.52997 * 109.46704 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.63951 * 303.30986 * 11 10 9 13 13 C 1.54329 * 110.72364 * 66.45281 * 11 10 9 14 14 N 1.47020 * 107.39864 * 140.47782 * 13 11 10 15 15 C 1.36933 * 125.64569 * 181.10618 * 14 13 11 16 16 H 1.08007 * 120.00229 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00315 * 179.97438 * 15 14 13 18 18 N 1.31616 * 119.99719 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00169 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47026 * 89.99733 * 19 17 15 21 21 H 1.48498 * 109.47044 * 210.00046 * 19 17 15 22 22 H 1.48497 * 109.47043 * 329.99771 * 19 17 15 23 23 C 1.47749 * 108.53213 * 1.17937 * 14 13 11 24 24 C 1.54906 * 104.84144 * 335.75409 * 23 14 13 25 25 H 1.08997 * 111.03712 * 155.18042 * 24 23 14 26 26 O 1.42902 * 111.00398 * 279.01648 * 24 23 14 27 27 H 1.08995 * 109.47136 * 265.08812 * 1 2 3 28 28 H 1.08997 * 109.47698 * 25.09623 * 1 2 3 29 29 H 1.09007 * 109.46922 * 145.09294 * 1 2 3 30 30 H 1.08002 * 125.56197 * 359.95430 * 3 2 1 31 31 H 1.08001 * 126.06964 * 179.97438 * 4 3 2 32 32 H 1.08000 * 126.46377 * 180.25975 * 5 4 3 33 33 H 0.96996 * 120.00375 * 354.85168 * 9 7 6 34 34 H 1.09001 * 109.46975 * 59.99866 * 10 9 7 35 35 H 1.08997 * 109.46852 * 300.00167 * 10 9 7 36 36 H 1.08993 * 109.87762 * 259.97307 * 13 11 10 37 37 H 1.08995 * 109.87744 * 20.98427 * 13 11 10 38 38 H 0.96998 * 119.99877 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.28610 * 216.94675 * 23 14 13 40 40 H 1.08996 * 110.52305 * 94.68244 * 23 14 13 41 41 H 0.96699 * 114.00202 * 292.20136 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1011 0.0000 4 6 3.5521 0.7096 0.0006 5 6 3.5781 -0.6886 0.0070 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6244 -2.7645 -0.0753 9 7 2.7101 -3.5143 0.0847 10 6 2.2513 -4.9010 0.1986 11 6 3.4615 -5.8336 0.2781 12 1 4.1098 -5.6965 -0.5874 13 6 4.2438 -5.6027 1.5883 14 7 4.6730 -6.9194 2.0819 15 6 5.3769 -7.1491 3.2338 16 1 5.6636 -6.3214 3.8657 17 6 5.7219 -8.4458 3.5895 18 7 5.3720 -9.4544 2.8198 19 14 6.6828 -8.7590 5.1605 20 1 5.7368 -8.9669 6.2862 21 1 7.5256 -9.9700 4.9921 22 1 7.5498 -7.5892 5.4521 23 6 4.2187 -7.9502 1.1259 24 6 3.0079 -7.3124 0.4002 25 1 2.8617 -7.7587 -0.5834 26 8 1.8220 -7.4208 1.1902 27 1 -0.3633 -0.0880 1.0238 28 1 -0.3634 0.9306 -0.4358 29 1 -0.3633 -0.8428 -0.5881 30 1 1.9080 2.1237 -0.0007 31 1 4.4132 1.3615 0.0003 32 1 4.4584 -1.3142 0.0129 33 1 3.6597 -3.3173 0.0699 34 1 1.6508 -5.1579 -0.6741 35 1 1.6482 -5.0113 1.0998 36 1 5.1152 -4.9774 1.3943 37 1 3.5996 -5.1226 2.3248 38 1 5.6134 -10.3605 3.0682 39 1 3.9109 -8.8501 1.6585 40 1 5.0086 -8.1842 0.4123 41 1 1.5004 -8.3267 1.2947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957891010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:33 Heat of formation + Delta-G solvation = -29.520212 kcal Electronic energy + Delta-G solvation = -23507.747062 eV Core-core repulsion = 20002.459187 eV Total energy + Delta-G solvation = -3505.287875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.28995 -40.46922 -39.52825 -36.33428 -36.14168 -34.15026 -33.57837 -31.71053 -30.23841 -29.19810 -27.36785 -27.20463 -25.35735 -23.37069 -22.16163 -21.41420 -21.22453 -20.40144 -19.13417 -18.86830 -17.98671 -17.08123 -16.79860 -16.71460 -16.36812 -16.03860 -15.61156 -15.54390 -15.14712 -14.55807 -14.41778 -14.36283 -14.10581 -13.93542 -13.65475 -13.25524 -13.18059 -13.16288 -13.01139 -12.87708 -12.63368 -12.33933 -12.03158 -11.85110 -11.81516 -11.64233 -11.04846 -10.80247 -10.66110 -10.18228 -9.67494 -9.15895 -8.84883 -7.78285 -5.20189 0.48048 1.46752 1.48401 1.56733 1.68915 1.85107 2.36817 2.42071 2.49763 3.28683 3.36404 3.60687 3.76594 3.90729 3.96988 3.99560 4.02283 4.21057 4.37731 4.43844 4.49835 4.56398 4.60769 4.64664 4.73855 4.83335 4.91733 5.02050 5.18412 5.28698 5.31990 5.37117 5.40746 5.51568 5.77747 5.82912 6.01384 6.29232 6.34566 6.51194 6.96826 7.11385 7.14819 7.78247 8.41772 9.24225 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.003439 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.208668 B = 8138.806505 C = 8928.938421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.422 5.422 3 C 0.025 3.975 4 C -0.222 4.222 5 C -0.139 4.139 6 C -0.091 4.091 7 C 0.583 3.417 8 O -0.589 6.589 9 N -0.707 5.707 10 C 0.159 3.841 11 C -0.091 4.091 12 H 0.115 0.885 13 C 0.142 3.858 14 N -0.621 5.621 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.947 5.947 19 Si 0.978 3.022 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.271 1.271 23 C 0.126 3.874 24 C 0.094 3.906 25 H 0.091 0.909 26 O -0.570 6.570 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.206 0.794 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.012 0.988 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.004 0.996 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 18.565 -9.452 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.095 5.095 3 C -0.111 4.111 4 C -0.245 4.245 5 C -0.166 4.166 6 C -0.204 4.204 7 C 0.372 3.628 8 O -0.472 6.472 9 N -0.358 5.358 10 C 0.036 3.964 11 C -0.110 4.110 12 H 0.133 0.867 13 C 0.017 3.983 14 N -0.347 5.347 15 C -0.366 4.366 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.196 1.196 23 C 0.001 3.999 24 C 0.033 3.967 25 H 0.109 0.891 26 O -0.377 6.377 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.096 0.904 30 H 0.223 0.777 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.021 0.979 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.455 18.820 -9.334 22.291 hybrid contribution 0.946 -1.205 0.984 1.821 sum -6.509 17.615 -8.350 20.552 Atomic orbital electron populations 1.22321 0.75378 1.05684 1.04057 1.44122 1.07566 1.05059 1.52732 1.22732 0.90486 0.92446 1.05452 1.21209 0.97238 0.94614 1.11471 1.21728 0.94246 0.96753 1.03842 1.20029 0.91646 0.87244 1.21472 1.17322 0.85237 0.84526 0.75694 1.90741 1.17651 1.85631 1.53197 1.45626 1.10289 1.06025 1.73848 1.20924 0.95464 0.78496 1.01561 1.22459 0.96138 0.93732 0.98694 0.86675 1.21419 0.95459 0.88010 0.93399 1.44712 1.64320 1.02229 1.23406 1.19420 1.26222 0.92881 0.98079 0.90570 1.25553 1.02798 0.95350 1.02056 1.69982 1.52253 0.98330 1.39150 0.85080 0.77971 0.77230 0.79064 1.21566 1.21814 1.19618 1.22500 0.92560 0.94070 0.90770 1.23094 0.85117 0.94879 0.93573 0.89142 1.86378 1.42522 1.33896 1.74938 0.90803 0.86282 0.90353 0.77694 0.81719 0.82582 0.75071 0.90969 0.93019 0.94934 0.97012 0.94320 0.90270 0.97857 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 10.49 127.77 1.34 2.50 16 2 N -0.42 -9.05 3.16 -534.31 -1.69 -10.74 16 3 C 0.02 0.39 11.37 83.48 0.95 1.34 16 4 C -0.22 -3.85 10.81 22.01 0.24 -3.62 16 5 C -0.14 -2.98 10.36 22.57 0.23 -2.75 16 6 C -0.09 -2.37 6.89 40.35 0.28 -2.09 16 7 C 0.58 17.91 7.78 86.45 0.67 18.58 16 8 O -0.59 -21.52 14.77 -4.32 -0.06 -21.59 16 9 N -0.71 -19.73 5.38 -467.07 -2.51 -22.24 16 10 C 0.16 5.00 4.59 86.38 0.40 5.39 16 11 C -0.09 -2.97 2.95 -9.60 -0.03 -3.00 16 12 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 13 C 0.14 5.84 6.52 86.73 0.57 6.40 16 14 N -0.62 -31.86 3.40 -691.18 -2.35 -34.21 16 15 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 18 N -0.95 -55.47 10.11 21.65 0.22 -55.25 16 19 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.13 5.96 5.65 86.79 0.49 6.45 16 24 C 0.09 3.35 4.17 31.98 0.13 3.48 16 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 26 O -0.57 -20.87 12.22 -148.98 -1.82 -22.69 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.08 1.76 6.52 -2.38 -0.02 1.74 16 30 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.16 2.78 7.44 -2.91 -0.02 2.75 16 33 H 0.41 9.62 7.22 -92.71 -0.67 8.95 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.95 7.44 -2.39 -0.02 1.94 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.01 0.52 7.76 -2.39 -0.02 0.50 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.08 4.27 5.88 -2.39 -0.01 4.25 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.39 11.61 9.12 -74.06 -0.68 10.94 16 Total: -1.00 -75.42 337.85 0.11 -75.30 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.29 Total: 26.64 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.60 Total: 16.94 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.34 Total: -122.44 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.88 Total: -44.27 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.42 0.11 -75.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.783 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds