Wall clock time and date at job start Tue Mar 31 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35543 * 125.67670 * 2 1 4 4 C 1.35456 * 108.86794 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86620 * 359.73504 * 4 3 2 6 6 C 1.37654 * 125.68173 * 180.02562 * 2 1 3 7 7 C 1.46678 * 126.22929 * 359.97342 * 6 2 1 8 8 O 1.21696 * 119.99768 * 5.24142 * 7 6 2 9 9 N 1.34772 * 119.99966 * 185.22938 * 7 6 2 10 10 C 1.46502 * 119.99839 * 174.68369 * 9 7 6 11 11 C 1.53002 * 109.47013 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.64023 * 303.30952 * 11 10 9 13 13 C 1.54327 * 110.72284 * 66.45362 * 11 10 9 14 14 N 1.47018 * 107.27013 * 140.73698 * 13 11 10 15 15 C 1.36939 * 125.64640 * 181.02804 * 14 13 11 16 16 H 1.07998 * 119.99974 * 10.36722 * 15 14 13 17 17 C 1.38810 * 119.99740 * 190.37368 * 15 14 13 18 18 N 1.31616 * 120.00643 * 30.01549 * 17 15 14 19 19 Si 1.86805 * 119.99712 * 210.01876 * 17 15 14 20 20 H 1.48507 * 109.46906 * 59.99681 * 19 17 15 21 21 H 1.48492 * 109.47291 * 299.99818 * 19 17 15 22 22 H 1.48501 * 109.47339 * 179.97438 * 19 17 15 23 23 C 1.47422 * 108.70626 * 1.28357 * 14 13 11 24 24 C 1.55138 * 104.72216 * 335.55511 * 23 14 13 25 25 H 1.08993 * 111.19566 * 279.18874 * 24 23 14 26 26 O 1.42899 * 110.93753 * 155.28606 * 24 23 14 27 27 H 1.08994 * 109.46968 * 272.74086 * 1 2 3 28 28 H 1.08999 * 109.47208 * 32.73940 * 1 2 3 29 29 H 1.08997 * 109.46876 * 152.74094 * 1 2 3 30 30 H 1.07994 * 125.56462 * 359.97438 * 3 2 1 31 31 H 1.07994 * 126.06190 * 180.02562 * 4 3 2 32 32 H 1.07997 * 126.45559 * 180.30284 * 5 4 3 33 33 H 0.96994 * 119.99985 * 354.68896 * 9 7 6 34 34 H 1.08997 * 109.47399 * 60.00716 * 10 9 7 35 35 H 1.08997 * 109.47106 * 300.00325 * 10 9 7 36 36 H 1.08996 * 109.87691 * 21.31656 * 13 11 10 37 37 H 1.08996 * 110.00504 * 260.22281 * 13 11 10 38 38 H 0.96997 * 119.99824 * 5.53144 * 18 17 15 39 39 H 1.08993 * 110.36858 * 94.48211 * 23 14 13 40 40 H 1.08996 * 110.36832 * 216.81258 * 23 14 13 41 41 H 0.96699 * 114.00098 * 67.95802 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 -0.0006 5 6 3.5780 -0.6888 0.0052 6 6 2.2679 -1.1181 -0.0005 7 6 1.8125 -2.5124 -0.0006 8 8 0.6259 -2.7649 -0.0965 9 7 2.7082 -3.5139 0.1053 10 6 2.2472 -4.8995 0.2225 11 6 3.4557 -5.8318 0.3282 12 1 4.1175 -5.7015 -0.5280 13 6 4.2173 -5.5911 1.6487 14 7 4.6422 -6.9050 2.1532 15 6 5.3308 -7.1290 3.3155 16 1 5.4614 -6.3285 4.0286 17 6 5.8609 -8.3849 3.5770 18 7 6.2422 -9.1585 2.5828 19 14 6.0332 -8.9773 5.3403 20 1 4.6953 -9.0114 5.9839 21 1 6.9194 -8.0507 6.0894 22 1 6.6212 -10.3409 5.3492 23 6 4.2096 -7.9409 1.1976 24 6 3.0036 -7.3109 0.4524 25 1 2.0902 -7.3921 1.0415 26 8 2.8331 -7.9043 -0.8363 27 1 -0.3633 0.0491 1.0264 28 1 -0.3633 0.8644 -0.5558 29 1 -0.3633 -0.9135 -0.4707 30 1 1.9082 2.1236 -0.0004 31 1 4.4132 1.3612 -0.0003 32 1 4.4583 -1.3144 0.0109 33 1 3.6580 -3.3172 0.1039 34 1 1.6605 -5.1630 -0.6575 35 1 1.6299 -5.0028 1.1149 36 1 3.5600 -5.1105 2.3733 37 1 5.0900 -4.9640 1.4668 38 1 6.2281 -8.8216 1.6733 39 1 5.0129 -8.1707 0.4978 40 1 3.8988 -8.8407 1.7285 41 1 2.5510 -8.8288 -0.8094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957891011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:37 Heat of formation + Delta-G solvation = -9.509516 kcal Electronic energy + Delta-G solvation = -23393.212442 eV Core-core repulsion = 19888.792296 eV Total energy + Delta-G solvation = -3504.420146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.49328 -39.32901 -38.27589 -35.38441 -34.90771 -33.10415 -32.33734 -30.30027 -28.93463 -27.74400 -26.66317 -25.41181 -23.81514 -22.27436 -20.72528 -20.55052 -20.07661 -19.43431 -18.04196 -17.61595 -16.96927 -16.02737 -15.82118 -15.57739 -15.01731 -14.64826 -14.35837 -13.97093 -13.71649 -13.55369 -13.52129 -13.40655 -13.05458 -12.54531 -12.50595 -12.43190 -12.25312 -12.14451 -11.96921 -11.18479 -10.94350 -10.75257 -10.53763 -10.21410 -10.03958 -9.91660 -9.76548 -9.38579 -9.09899 -8.91313 -8.44567 -8.36385 -7.04816 -6.17473 -3.15833 1.35722 2.48980 2.58997 3.30017 3.35308 3.48150 3.52507 3.70163 4.38879 4.59132 4.62930 4.67591 4.79664 4.92283 5.02237 5.07073 5.22720 5.23051 5.25808 5.32870 5.43971 5.55205 5.69040 5.77315 5.87308 5.89816 6.00381 6.05997 6.18516 6.37211 6.47330 6.60147 6.65189 6.81164 6.81552 6.90090 7.02369 7.48786 7.68344 7.95269 8.15549 8.41796 8.94434 9.75667 10.27477 11.16969 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.003420 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.477741 B = 8184.853048 C = 8956.894642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.412 5.412 3 C 0.010 3.990 4 C -0.207 4.207 5 C -0.140 4.140 6 C -0.051 4.051 7 C 0.588 3.412 8 O -0.555 6.555 9 N -0.711 5.711 10 C 0.137 3.863 11 C -0.105 4.105 12 H 0.089 0.911 13 C 0.142 3.858 14 N -0.601 5.601 15 C -0.342 4.342 16 H 0.070 0.930 17 C -0.024 4.024 18 N -0.916 5.916 19 Si 1.062 2.938 20 H -0.294 1.294 21 H -0.293 1.293 22 H -0.285 1.285 23 C 0.119 3.881 24 C 0.092 3.908 25 H 0.066 0.934 26 O -0.565 6.565 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.405 0.595 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.032 0.968 37 H 0.027 0.973 38 H 0.269 0.731 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 16.486 -6.914 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.085 5.085 3 C -0.125 4.125 4 C -0.231 4.231 5 C -0.166 4.166 6 C -0.164 4.164 7 C 0.376 3.624 8 O -0.436 6.436 9 N -0.362 5.362 10 C 0.014 3.986 11 C -0.124 4.124 12 H 0.107 0.893 13 C 0.016 3.984 14 N -0.329 5.329 15 C -0.469 4.469 16 H 0.088 0.912 17 C -0.225 4.225 18 N -0.557 5.557 19 Si 0.891 3.109 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.211 1.211 23 C -0.007 4.007 24 C 0.031 3.969 25 H 0.084 0.916 26 O -0.370 6.370 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.884 15.542 -6.109 19.406 hybrid contribution -0.001 1.051 -0.677 1.250 sum -9.885 16.594 -6.786 20.472 Atomic orbital electron populations 1.22324 0.76188 1.05603 1.03767 1.43854 1.06807 1.04975 1.52841 1.22017 0.90765 0.91470 1.08249 1.20835 0.96012 0.95040 1.11262 1.21411 0.94532 0.95601 1.05104 1.20084 0.90505 0.87631 1.18215 1.16966 0.85575 0.83515 0.76319 1.90749 1.16419 1.84923 1.51475 1.45657 1.09976 1.06523 1.74029 1.21404 0.96296 0.78602 1.02310 1.22409 0.96481 0.93461 1.00069 0.89279 1.21375 0.95785 0.89954 0.91265 1.44406 1.65500 0.99594 1.23415 1.19758 1.33552 0.99744 0.93846 0.91193 1.25713 0.96854 0.94230 1.05735 1.70804 1.42449 1.41247 1.01183 0.83573 0.76102 0.76289 0.74935 1.22106 1.21956 1.21065 1.22210 0.93148 0.93256 0.92074 1.23084 0.98056 0.92108 0.83629 0.91582 1.86413 1.91392 1.30357 1.28859 0.90706 0.90091 0.87426 0.81507 0.83969 0.83733 0.76025 0.90865 0.91140 0.95005 0.95524 0.91933 0.94773 0.92473 0.77509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.72 59.85 0.64 1.20 16 2 N -0.41 -4.65 3.16 -120.24 -0.38 -5.03 16 3 C 0.01 0.10 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -2.07 10.81 -39.98 -0.43 -2.51 16 5 C -0.14 -1.60 10.36 -39.12 -0.41 -2.01 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.23 16 7 C 0.59 8.71 7.77 -12.86 -0.10 8.61 16 8 O -0.56 -9.50 14.60 5.19 0.08 -9.42 16 9 N -0.71 -9.77 5.38 -61.62 -0.33 -10.10 16 10 C 0.14 2.06 5.01 -4.04 -0.02 2.04 16 11 C -0.10 -1.76 2.74 -88.78 -0.24 -2.01 16 12 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.14 2.84 6.52 -3.06 -0.02 2.82 16 14 N -0.60 -14.97 3.35 -169.94 -0.57 -15.54 16 15 C -0.34 -9.56 10.03 -15.06 -0.15 -9.71 16 16 H 0.07 1.95 7.99 -52.49 -0.42 1.53 16 17 C -0.02 -0.67 5.04 -17.43 -0.09 -0.76 16 18 N -0.92 -27.35 12.77 55.49 0.71 -26.64 16 19 Si 1.06 25.08 30.01 -169.99 -5.10 19.98 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.12 2.71 4.96 -2.41 -0.01 2.70 16 24 C 0.09 1.64 3.90 -24.46 -0.10 1.54 16 25 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 26 O -0.57 -9.14 13.47 -35.23 -0.47 -9.62 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 1.19 6.07 -51.93 -0.32 0.87 16 30 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.40 7.45 -52.49 -0.39 1.01 16 33 H 0.40 4.88 7.23 -40.82 -0.30 4.58 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.27 8.05 5.96 -40.82 -0.24 7.80 16 39 H 0.03 0.84 6.95 -51.93 -0.36 0.48 16 40 H 0.06 1.41 7.61 -51.93 -0.40 1.01 16 41 H 0.38 4.59 9.12 45.56 0.42 5.01 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -34.63 339.25 -7.64 -42.28 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.00 Total: 8.37 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.68 Total: 0.60 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.57 Total: -57.31 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.40 Total: -19.03 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.63 -7.64 -42.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.766 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds