Wall clock time and date at job start Tue Mar 31 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35543 * 125.67670 * 2 1 4 4 C 1.35456 * 108.86794 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86620 * 359.73504 * 4 3 2 6 6 C 1.37654 * 125.68173 * 180.02562 * 2 1 3 7 7 C 1.46678 * 126.22929 * 359.97342 * 6 2 1 8 8 O 1.21696 * 119.99768 * 5.24142 * 7 6 2 9 9 N 1.34772 * 119.99966 * 185.22938 * 7 6 2 10 10 C 1.46502 * 119.99839 * 174.68369 * 9 7 6 11 11 C 1.53002 * 109.47013 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.64023 * 303.30952 * 11 10 9 13 13 C 1.54327 * 110.72284 * 66.45362 * 11 10 9 14 14 N 1.47018 * 107.27013 * 140.73698 * 13 11 10 15 15 C 1.36939 * 125.64640 * 181.02804 * 14 13 11 16 16 H 1.07998 * 119.99974 * 10.36722 * 15 14 13 17 17 C 1.38810 * 119.99740 * 190.37368 * 15 14 13 18 18 N 1.31616 * 120.00643 * 30.01549 * 17 15 14 19 19 Si 1.86805 * 119.99712 * 210.01876 * 17 15 14 20 20 H 1.48507 * 109.46906 * 59.99681 * 19 17 15 21 21 H 1.48492 * 109.47291 * 299.99818 * 19 17 15 22 22 H 1.48501 * 109.47339 * 179.97438 * 19 17 15 23 23 C 1.47422 * 108.70626 * 1.28357 * 14 13 11 24 24 C 1.55138 * 104.72216 * 335.55511 * 23 14 13 25 25 H 1.08993 * 111.19566 * 279.18874 * 24 23 14 26 26 O 1.42899 * 110.93753 * 155.28606 * 24 23 14 27 27 H 1.08994 * 109.46968 * 272.74086 * 1 2 3 28 28 H 1.08999 * 109.47208 * 32.73940 * 1 2 3 29 29 H 1.08997 * 109.46876 * 152.74094 * 1 2 3 30 30 H 1.07994 * 125.56462 * 359.97438 * 3 2 1 31 31 H 1.07994 * 126.06190 * 180.02562 * 4 3 2 32 32 H 1.07997 * 126.45559 * 180.30284 * 5 4 3 33 33 H 0.96994 * 119.99985 * 354.68896 * 9 7 6 34 34 H 1.08997 * 109.47399 * 60.00716 * 10 9 7 35 35 H 1.08997 * 109.47106 * 300.00325 * 10 9 7 36 36 H 1.08996 * 109.87691 * 21.31656 * 13 11 10 37 37 H 1.08996 * 110.00504 * 260.22281 * 13 11 10 38 38 H 0.96997 * 119.99824 * 5.53144 * 18 17 15 39 39 H 1.08993 * 110.36858 * 94.48211 * 23 14 13 40 40 H 1.08996 * 110.36832 * 216.81258 * 23 14 13 41 41 H 0.96699 * 114.00098 * 67.95802 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 -0.0006 5 6 3.5780 -0.6888 0.0052 6 6 2.2679 -1.1181 -0.0005 7 6 1.8125 -2.5124 -0.0006 8 8 0.6259 -2.7649 -0.0965 9 7 2.7082 -3.5139 0.1053 10 6 2.2472 -4.8995 0.2225 11 6 3.4557 -5.8318 0.3282 12 1 4.1175 -5.7015 -0.5280 13 6 4.2173 -5.5911 1.6487 14 7 4.6422 -6.9050 2.1532 15 6 5.3308 -7.1290 3.3155 16 1 5.4614 -6.3285 4.0286 17 6 5.8609 -8.3849 3.5770 18 7 6.2422 -9.1585 2.5828 19 14 6.0332 -8.9773 5.3403 20 1 4.6953 -9.0114 5.9839 21 1 6.9194 -8.0507 6.0894 22 1 6.6212 -10.3409 5.3492 23 6 4.2096 -7.9409 1.1976 24 6 3.0036 -7.3109 0.4524 25 1 2.0902 -7.3921 1.0415 26 8 2.8331 -7.9043 -0.8363 27 1 -0.3633 0.0491 1.0264 28 1 -0.3633 0.8644 -0.5558 29 1 -0.3633 -0.9135 -0.4707 30 1 1.9082 2.1236 -0.0004 31 1 4.4132 1.3612 -0.0003 32 1 4.4583 -1.3144 0.0109 33 1 3.6580 -3.3172 0.1039 34 1 1.6605 -5.1630 -0.6575 35 1 1.6299 -5.0028 1.1149 36 1 3.5600 -5.1105 2.3733 37 1 5.0900 -4.9640 1.4668 38 1 6.2281 -8.8216 1.6733 39 1 5.0129 -8.1707 0.4978 40 1 3.8988 -8.8407 1.7285 41 1 2.5510 -8.8288 -0.8094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957891011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:36 Heat of formation + Delta-G solvation = -35.536989 kcal Electronic energy + Delta-G solvation = -23394.341078 eV Core-core repulsion = 19888.792296 eV Total energy + Delta-G solvation = -3505.548782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32808 -40.60183 -39.68251 -36.85296 -36.33278 -34.35657 -33.63078 -31.72902 -30.19350 -29.36417 -27.38431 -27.05510 -25.41889 -23.41663 -22.30154 -21.60736 -21.37752 -20.51888 -19.64634 -18.93951 -18.37146 -17.15335 -16.87225 -16.69728 -16.27975 -16.19129 -15.63746 -15.54465 -15.32691 -15.00245 -14.47519 -14.43916 -14.14914 -14.06350 -13.91818 -13.64788 -13.25498 -13.18261 -12.89448 -12.81452 -12.61435 -12.42120 -12.33601 -11.90182 -11.75375 -11.62487 -11.15303 -10.96410 -10.53218 -10.26794 -9.69935 -9.19299 -9.09548 -8.38868 -5.33114 0.43730 1.57885 1.63128 1.65372 1.81657 1.84605 2.32316 2.34533 2.60512 3.00088 3.18734 3.44127 3.53539 3.73775 3.76174 3.94276 3.98338 4.18695 4.23738 4.25170 4.36932 4.42318 4.46849 4.54212 4.62680 4.72572 4.77490 4.80613 4.95252 5.08129 5.14636 5.15787 5.26323 5.29384 5.60969 5.79182 5.98632 6.26195 6.31620 6.43213 6.75637 6.84021 7.06998 7.66041 8.21504 8.95655 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.003420 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.477741 B = 8184.853048 C = 8956.894642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.421 5.421 3 C 0.026 3.974 4 C -0.222 4.222 5 C -0.140 4.140 6 C -0.091 4.091 7 C 0.586 3.414 8 O -0.586 6.586 9 N -0.707 5.707 10 C 0.151 3.849 11 C -0.087 4.087 12 H 0.093 0.907 13 C 0.141 3.859 14 N -0.624 5.624 15 C -0.352 4.352 16 H 0.067 0.933 17 C -0.076 4.076 18 N -0.944 5.944 19 Si 1.114 2.886 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.292 1.292 23 C 0.124 3.876 24 C 0.109 3.891 25 H 0.079 0.921 26 O -0.565 6.565 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.206 0.794 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.010 0.990 40 H 0.029 0.971 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 18.704 -6.829 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.094 5.094 3 C -0.110 4.110 4 C -0.246 4.246 5 C -0.167 4.167 6 C -0.204 4.204 7 C 0.376 3.624 8 O -0.469 6.469 9 N -0.358 5.358 10 C 0.027 3.973 11 C -0.107 4.107 12 H 0.112 0.888 13 C 0.016 3.984 14 N -0.352 5.352 15 C -0.480 4.480 16 H 0.084 0.916 17 C -0.272 4.272 18 N -0.587 5.587 19 Si 0.938 3.062 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.218 1.218 23 C -0.002 4.002 24 C 0.049 3.951 25 H 0.097 0.903 26 O -0.372 6.372 27 H 0.098 0.902 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.223 0.777 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.048 0.952 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.540 17.777 -6.042 21.532 hybrid contribution 0.219 0.463 -0.751 0.909 sum -10.321 18.240 -6.793 22.031 Atomic orbital electron populations 1.22407 0.75284 1.05901 1.04397 1.44122 1.07607 1.04970 1.52659 1.22722 0.90436 0.92504 1.05350 1.21208 0.97287 0.94603 1.11475 1.21713 0.94294 0.96777 1.03927 1.19983 0.91574 0.87278 1.21522 1.17267 0.85157 0.84425 0.75583 1.90728 1.17582 1.85491 1.53071 1.45553 1.10407 1.05902 1.73933 1.21143 0.95046 0.78971 1.02101 1.22227 0.96810 0.93265 0.98365 0.88849 1.21489 0.96154 0.87957 0.92752 1.44667 1.65211 1.01995 1.23365 1.20037 1.33149 0.99839 0.94973 0.91552 1.27088 0.96754 0.94700 1.08640 1.70915 1.44925 1.41802 1.01010 0.82875 0.76856 0.75664 0.70809 1.20735 1.19963 1.21766 1.22119 0.94341 0.92413 0.91346 1.22799 0.96243 0.92120 0.83968 0.90296 1.86387 1.91310 1.32046 1.27476 0.90220 0.86706 0.89869 0.77686 0.81812 0.82806 0.75085 0.90679 0.91735 0.94685 0.95185 0.93348 0.97217 0.95249 0.75337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.72 127.77 1.37 2.37 16 2 N -0.42 -8.71 3.16 -534.32 -1.69 -10.40 16 3 C 0.03 0.40 11.38 83.48 0.95 1.35 16 4 C -0.22 -3.85 10.81 22.01 0.24 -3.61 16 5 C -0.14 -2.99 10.36 22.57 0.23 -2.76 16 6 C -0.09 -2.29 6.89 40.35 0.28 -2.01 16 7 C 0.59 17.16 7.77 86.45 0.67 17.83 16 8 O -0.59 -20.13 14.60 -4.34 -0.06 -20.19 16 9 N -0.71 -18.93 5.38 -467.08 -2.51 -21.44 16 10 C 0.15 4.40 5.01 86.38 0.43 4.83 16 11 C -0.09 -2.86 2.74 -9.60 -0.03 -2.89 16 12 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 13 C 0.14 5.61 6.52 86.73 0.57 6.18 16 14 N -0.62 -31.50 3.35 -691.57 -2.31 -33.81 16 15 C -0.35 -19.91 10.03 84.03 0.84 -19.07 16 16 H 0.07 3.71 7.99 -2.91 -0.02 3.69 16 17 C -0.08 -4.34 5.04 84.86 0.43 -3.92 16 18 N -0.94 -57.80 12.77 21.65 0.28 -57.52 16 19 Si 1.11 50.86 30.01 68.60 2.06 52.92 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 23 C 0.12 5.77 4.96 86.94 0.43 6.20 16 24 C 0.11 3.84 3.90 32.07 0.12 3.97 16 25 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 26 O -0.56 -17.50 13.47 -148.98 -2.01 -19.50 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.82 6.07 -2.39 -0.01 1.80 16 30 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.15 2.79 7.45 -2.91 -0.02 2.77 16 33 H 0.41 9.58 7.23 -92.71 -0.67 8.91 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 36 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.26 15.91 5.96 -92.71 -0.55 15.36 16 39 H 0.01 0.51 6.95 -2.39 -0.02 0.50 16 40 H 0.03 1.50 7.61 -2.39 -0.02 1.48 16 41 H 0.40 9.08 9.12 -74.06 -0.68 8.40 16 Total: -1.00 -76.06 339.25 0.21 -75.85 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.07 Total: 25.63 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.54 Total: 8.47 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.24 Total: -123.18 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.07 Total: -39.70 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.06 Total: 52.92 kcal Total: -76.06 0.21 -75.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.311 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds