Wall clock time and date at job start Tue Mar 31 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35531 * 125.67645 * 2 1 4 4 C 1.35453 * 108.87353 * 179.97438 * 3 2 1 5 5 C 1.39843 * 107.86385 * 359.73696 * 4 3 2 6 6 C 1.37651 * 125.67968 * 179.97438 * 2 1 3 7 7 C 1.46674 * 126.23255 * 0.02562 * 6 2 1 8 8 O 1.21699 * 120.00207 * 4.10553 * 7 6 2 9 9 N 1.34778 * 119.99889 * 184.10302 * 7 6 2 10 10 C 1.46507 * 119.99677 * 174.85345 * 9 7 6 11 11 C 1.53006 * 109.46697 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.77987 * 51.75876 * 11 10 9 13 13 C 1.54319 * 110.72334 * 288.51967 * 11 10 9 14 14 N 1.47018 * 107.27313 * 219.44637 * 13 11 10 15 15 C 1.36940 * 125.64968 * 178.98471 * 14 13 11 16 16 H 1.08004 * 119.99691 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99731 * 179.97438 * 15 14 13 18 18 N 1.31608 * 120.00414 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99414 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47193 * 90.00481 * 19 17 15 21 21 H 1.48504 * 109.46940 * 209.99921 * 19 17 15 22 22 H 1.48496 * 109.47586 * 330.00003 * 19 17 15 23 23 C 1.47426 * 108.70165 * 358.94028 * 14 13 11 24 24 C 1.54909 * 104.83297 * 24.12917 * 23 14 13 25 25 H 1.09003 * 111.03635 * 204.90303 * 24 23 14 26 26 O 1.42899 * 111.00451 * 81.06467 * 24 23 14 27 27 H 1.09003 * 109.47608 * 265.09314 * 1 2 3 28 28 H 1.09002 * 109.47365 * 25.09584 * 1 2 3 29 29 H 1.09005 * 109.46850 * 145.09337 * 1 2 3 30 30 H 1.07997 * 125.56668 * 359.93789 * 3 2 1 31 31 H 1.07998 * 126.06730 * 180.02562 * 4 3 2 32 32 H 1.07996 * 126.45703 * 180.30203 * 5 4 3 33 33 H 0.96998 * 120.00149 * 354.84998 * 9 7 6 34 34 H 1.08999 * 109.47567 * 60.00154 * 10 9 7 35 35 H 1.08997 * 109.46745 * 299.99121 * 10 9 7 36 36 H 1.09001 * 109.88018 * 338.86633 * 13 11 10 37 37 H 1.09000 * 109.87986 * 100.02307 * 13 11 10 38 38 H 0.96999 * 120.00646 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.36526 * 265.28810 * 23 14 13 40 40 H 1.09002 * 110.36736 * 142.96672 * 23 14 13 41 41 H 0.96702 * 113.99922 * 67.80231 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6888 0.0071 6 6 2.2678 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6243 -2.7645 -0.0752 9 7 2.7099 -3.5144 0.0846 10 6 2.2510 -4.9011 0.1984 11 6 3.4613 -5.8339 0.2765 12 1 4.1523 -5.5066 1.0535 13 6 4.1751 -5.9178 -1.0890 14 7 4.5870 -7.3160 -1.2811 15 6 5.2354 -7.8132 -2.3800 16 1 5.4866 -7.1581 -3.2011 17 6 5.5707 -9.1590 -2.4381 18 7 5.2650 -9.9571 -1.4373 19 14 6.4558 -9.8370 -3.9369 20 1 7.9232 -9.7356 -3.7331 21 1 6.0804 -11.2606 -4.1315 22 1 6.0675 -9.0542 -5.1375 23 6 4.1873 -8.0939 -0.0943 24 6 3.0108 -7.2979 0.5237 25 1 2.9170 -7.5031 1.5902 26 8 1.7873 -7.5795 -0.1588 27 1 -0.3634 -0.0879 1.0239 28 1 -0.3634 0.9307 -0.4359 29 1 -0.3633 -0.8428 -0.5881 30 1 1.9081 2.1236 -0.0010 31 1 4.4131 1.3613 0.0011 32 1 4.4583 -1.3143 0.0137 33 1 3.6595 -3.3175 0.0697 34 1 1.6505 -5.1579 -0.6742 35 1 1.6481 -5.0114 1.0997 36 1 3.4910 -5.6203 -1.8838 37 1 5.0515 -5.2697 -1.0896 38 1 5.4996 -10.8975 -1.4777 39 1 5.0143 -8.1589 0.6128 40 1 3.8583 -9.0909 -0.3873 41 1 1.4662 -8.4831 -0.0339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957891012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:40 Heat of formation + Delta-G solvation = -3.898205 kcal Electronic energy + Delta-G solvation = -23460.795940 eV Core-core repulsion = 19956.619119 eV Total energy + Delta-G solvation = -3504.176821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44747 -39.18817 -38.08055 -34.93663 -34.53578 -33.01909 -32.13053 -30.24803 -28.95888 -27.61193 -26.63157 -25.47465 -23.79441 -22.18757 -20.66520 -20.39804 -19.88065 -19.23606 -17.92007 -17.28915 -16.40796 -15.90034 -15.74292 -15.34953 -14.84376 -14.75912 -14.13344 -14.03448 -13.79817 -13.51333 -13.35232 -13.14348 -12.69592 -12.50891 -12.45287 -12.30329 -12.12554 -11.92690 -11.36749 -11.23436 -10.80736 -10.64242 -10.35586 -10.21333 -10.02468 -9.82618 -9.76983 -9.10012 -8.95599 -8.88070 -8.67090 -8.31828 -6.83101 -5.67924 -3.07767 1.41603 2.55138 2.62112 3.39799 3.41335 3.42590 3.45129 3.47032 4.47526 4.63933 4.71165 4.79955 4.83144 5.06950 5.15828 5.26271 5.28107 5.33900 5.41184 5.46984 5.52624 5.62868 5.92054 5.92357 6.01765 6.08955 6.13561 6.35796 6.43857 6.50775 6.61188 6.70430 6.84581 6.87656 7.05771 7.29151 7.58961 7.60028 7.76256 8.24010 8.27124 8.38404 9.19830 9.81263 10.45234 11.37021 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024518 B = 0.003302 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.731995 B = 8478.440318 C = 9133.849955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.412 5.412 3 C 0.009 3.991 4 C -0.208 4.208 5 C -0.142 4.142 6 C -0.049 4.049 7 C 0.585 3.415 8 O -0.554 6.554 9 N -0.714 5.714 10 C 0.144 3.856 11 C -0.106 4.106 12 H 0.087 0.913 13 C 0.144 3.856 14 N -0.598 5.598 15 C -0.218 4.218 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.926 5.926 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.126 3.874 24 C 0.082 3.918 25 H 0.054 0.946 26 O -0.557 6.557 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.402 0.598 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.020 0.980 38 H 0.252 0.748 39 H 0.019 0.981 40 H 0.112 0.888 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 18.108 6.707 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.085 5.085 3 C -0.127 4.127 4 C -0.232 4.232 5 C -0.168 4.168 6 C -0.162 4.162 7 C 0.373 3.627 8 O -0.434 6.434 9 N -0.364 5.364 10 C 0.021 3.979 11 C -0.126 4.126 12 H 0.105 0.895 13 C 0.018 3.982 14 N -0.324 5.324 15 C -0.346 4.346 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.001 3.999 24 C 0.022 3.978 25 H 0.072 0.928 26 O -0.363 6.363 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.129 0.871 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.487 18.296 6.387 20.775 hybrid contribution 1.042 -0.730 -0.515 1.372 sum -6.445 17.566 5.872 19.611 Atomic orbital electron populations 1.22248 0.76170 1.04812 1.04133 1.43857 1.06813 1.05022 1.52811 1.22003 0.90778 0.91434 1.08449 1.20824 0.95974 0.95056 1.11356 1.21401 0.94545 0.95540 1.05359 1.20161 0.90471 0.87733 1.17863 1.16973 0.85716 0.83466 0.76563 1.90775 1.16329 1.84980 1.51296 1.45786 1.09741 1.06794 1.74092 1.21260 0.96323 0.77535 1.02786 1.22515 0.96122 0.94241 0.99693 0.89516 1.21327 0.95375 0.88408 0.93063 1.44345 1.67751 1.02452 1.17806 1.19098 1.28377 0.92600 0.94537 0.90460 1.24756 1.01623 0.96107 0.98272 1.69738 1.52401 1.04522 1.30860 0.86051 0.79212 0.78186 0.81942 1.21669 1.21674 1.20688 1.22589 0.91739 0.97857 0.87720 1.23207 0.86533 0.94254 0.93842 0.92779 1.86397 1.39534 1.34769 1.75579 0.90681 0.90000 0.87969 0.81567 0.84036 0.83748 0.76304 0.90052 0.91691 0.95344 0.96222 0.93770 0.96314 0.87057 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.49 59.84 0.63 1.25 16 2 N -0.41 -4.70 3.16 -120.24 -0.38 -5.08 16 3 C 0.01 0.08 11.37 -16.91 -0.19 -0.11 16 4 C -0.21 -2.07 10.81 -39.98 -0.43 -2.50 16 5 C -0.14 -1.62 10.36 -39.11 -0.41 -2.02 16 6 C -0.05 -0.64 6.89 -81.98 -0.56 -1.21 16 7 C 0.59 8.95 7.78 -12.85 -0.10 8.85 16 8 O -0.55 -9.94 14.77 5.19 0.08 -9.87 16 9 N -0.71 -10.09 5.45 -61.61 -0.34 -10.43 16 10 C 0.14 2.31 4.50 -4.04 -0.02 2.29 16 11 C -0.11 -1.81 2.89 -88.78 -0.26 -2.07 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 13 C 0.14 3.00 6.75 -3.07 -0.02 2.98 16 14 N -0.60 -15.21 3.39 -170.07 -0.58 -15.78 16 15 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 16 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 17 C -0.01 -0.35 5.49 -17.44 -0.10 -0.45 16 18 N -0.93 -26.58 10.09 55.49 0.56 -26.02 16 19 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.13 2.96 5.62 -2.53 -0.01 2.94 16 24 C 0.08 1.51 4.17 -24.58 -0.10 1.41 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 O -0.56 -10.34 12.33 -35.23 -0.43 -10.77 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.10 1.15 6.52 -51.93 -0.34 0.82 16 30 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.37 7.44 -52.49 -0.39 0.98 16 33 H 0.40 4.85 7.37 -40.82 -0.30 4.54 16 34 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 2.92 5.87 -51.93 -0.31 2.62 16 41 H 0.37 5.67 9.12 45.56 0.42 6.08 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -34.10 338.21 -7.81 -41.90 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.06 Total: 8.75 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.73 Total: 5.12 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.73 Total: -57.31 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.36 Total: -20.64 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.10 -7.81 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds