Wall clock time and date at job start Tue Mar 31 2020 03:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35528 * 125.67815 * 2 1 4 4 C 1.35453 * 108.87289 * 179.97438 * 3 2 1 5 5 C 1.39833 * 107.86373 * 359.97438 * 4 3 2 6 6 C 1.37649 * 125.67774 * 179.69169 * 2 1 3 7 7 C 1.46677 * 126.23564 * 0.02562 * 6 2 1 8 8 O 1.21696 * 119.99881 * 5.00513 * 7 6 2 9 9 N 1.34773 * 120.00511 * 185.00073 * 7 6 2 10 10 C 1.46496 * 120.00662 * 185.26583 * 9 7 6 11 11 C 1.52999 * 109.47511 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.63752 * 56.69478 * 11 10 9 13 13 C 1.54321 * 110.72046 * 293.54780 * 11 10 9 14 14 N 1.47023 * 107.26800 * 219.44030 * 13 11 10 15 15 C 1.36944 * 125.64365 * 178.90592 * 14 13 11 16 16 H 1.07997 * 119.99978 * 324.83017 * 15 14 13 17 17 C 1.38810 * 119.99911 * 144.82542 * 15 14 13 18 18 N 1.31614 * 119.99844 * 167.41381 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 347.42120 * 17 15 14 20 20 H 1.48496 * 109.47376 * 85.17084 * 19 17 15 21 21 H 1.48496 * 109.47056 * 205.17447 * 19 17 15 22 22 H 1.48507 * 109.47194 * 325.17097 * 19 17 15 23 23 C 1.47418 * 108.70668 * 358.94181 * 14 13 11 24 24 C 1.54913 * 104.83067 * 24.13100 * 23 14 13 25 25 H 1.08991 * 111.00428 * 81.06357 * 24 23 14 26 26 O 1.42907 * 111.00182 * 204.91809 * 24 23 14 27 27 H 1.08998 * 109.47523 * 87.98260 * 1 2 3 28 28 H 1.09001 * 109.47220 * 327.97569 * 1 2 3 29 29 H 1.09007 * 109.46991 * 207.98072 * 1 2 3 30 30 H 1.08004 * 125.56531 * 359.95983 * 3 2 1 31 31 H 1.08008 * 126.06538 * 179.97438 * 4 3 2 32 32 H 1.08008 * 126.45611 * 180.02562 * 5 4 3 33 33 H 0.97002 * 119.99758 * 5.27020 * 9 7 6 34 34 H 1.09002 * 109.47310 * 300.01010 * 10 9 7 35 35 H 1.08998 * 109.46869 * 59.99967 * 10 9 7 36 36 H 1.08991 * 109.88563 * 338.86037 * 13 11 10 37 37 H 1.09006 * 109.87831 * 100.02907 * 13 11 10 38 38 H 0.97005 * 119.99479 * 180.02562 * 18 17 15 39 39 H 1.08998 * 110.36545 * 142.96596 * 23 14 13 40 40 H 1.08999 * 110.36861 * 265.17790 * 23 14 13 41 41 H 0.96696 * 113.99484 * 292.19507 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 0.0006 5 6 3.5779 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0060 7 6 1.8124 -2.5124 0.0130 8 8 0.6255 -2.7653 -0.0781 9 7 2.7083 -3.5135 0.1202 10 6 2.2672 -4.9062 0.0114 11 6 3.4717 -5.8365 0.1685 12 1 3.9799 -5.6506 1.1147 13 6 4.4466 -5.6723 -1.0165 14 7 4.9410 -7.0127 -1.3638 15 6 5.8130 -7.3034 -2.3789 16 1 5.7749 -6.7422 -3.3008 17 6 6.7460 -8.3192 -2.2228 18 7 7.4122 -8.7669 -3.2659 19 14 7.0560 -9.0510 -0.5323 20 1 6.0621 -10.1218 -0.2666 21 1 8.4253 -9.6236 -0.4843 22 1 6.9271 -7.9893 0.4980 23 6 4.3420 -7.9919 -0.4389 24 6 3.0364 -7.3216 0.0572 25 1 2.2349 -7.4403 -0.6717 26 8 2.6477 -7.8383 1.3317 27 1 -0.3634 0.0362 -1.0270 28 1 -0.3634 0.8713 0.5450 29 1 -0.3633 -0.9076 0.4822 30 1 1.9081 2.1236 -0.0006 31 1 4.4132 1.3612 0.0003 32 1 4.4583 -1.3144 0.0026 33 1 3.6454 -3.3118 0.2694 34 1 1.5395 -5.1191 0.7945 35 1 1.8084 -5.0668 -0.9642 36 1 3.9245 -5.2375 -1.8686 37 1 5.2805 -5.0338 -0.7247 38 1 8.0639 -9.4770 -3.1568 39 1 4.1161 -8.9203 -0.9635 40 1 5.0136 -8.1837 0.3979 41 1 2.3676 -8.7636 1.3120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957891013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:43 Heat of formation + Delta-G solvation = -7.188090 kcal Electronic energy + Delta-G solvation = -23441.977967 eV Core-core repulsion = 19937.658485 eV Total energy + Delta-G solvation = -3504.319482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48619 -39.36082 -38.35141 -35.45383 -34.85339 -33.06023 -32.29453 -30.73848 -29.21997 -27.81905 -26.65795 -25.89064 -23.64723 -22.20291 -21.11639 -20.63654 -20.01572 -19.46477 -18.04544 -17.27078 -16.91791 -15.99151 -15.84622 -15.74270 -15.11474 -14.99043 -14.47858 -14.12453 -13.77081 -13.55916 -13.41612 -13.27646 -13.08404 -12.81261 -12.54512 -12.45729 -12.23043 -12.13929 -12.06552 -11.41797 -11.27111 -10.90575 -10.63649 -10.43368 -10.26436 -9.94716 -9.66509 -9.47819 -9.10053 -8.90145 -8.70178 -8.35607 -6.91961 -6.03595 -3.51133 1.36653 2.49978 2.59762 3.28971 3.30016 3.35179 3.41945 3.46408 4.32159 4.46861 4.62184 4.66165 4.79474 4.83108 4.97129 5.02747 5.14418 5.24010 5.26991 5.29379 5.38647 5.42883 5.59972 5.63731 5.79638 5.91523 5.97783 6.05019 6.12357 6.36256 6.40240 6.51719 6.53825 6.61053 6.68344 6.82234 7.03113 7.48720 7.76394 7.88178 8.15734 8.26920 8.76176 9.58936 10.12563 11.12143 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.003587 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.161860 B = 7803.548563 C = 8560.898781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.412 5.412 3 C 0.010 3.990 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.052 4.052 7 C 0.588 3.412 8 O -0.555 6.555 9 N -0.712 5.712 10 C 0.137 3.863 11 C -0.107 4.107 12 H 0.090 0.910 13 C 0.137 3.863 14 N -0.604 5.604 15 C -0.250 4.250 16 H 0.087 0.913 17 C 0.032 3.968 18 N -0.908 5.908 19 Si 0.894 3.106 20 H -0.285 1.285 21 H -0.301 1.301 22 H -0.272 1.272 23 C 0.084 3.916 24 C 0.097 3.903 25 H 0.072 0.928 26 O -0.565 6.565 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.405 0.595 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 15.703 9.040 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.085 5.085 3 C -0.125 4.125 4 C -0.231 4.231 5 C -0.166 4.166 6 C -0.165 4.165 7 C 0.376 3.624 8 O -0.436 6.436 9 N -0.363 5.363 10 C 0.014 3.986 11 C -0.127 4.127 12 H 0.109 0.891 13 C 0.012 3.988 14 N -0.333 5.333 15 C -0.378 4.378 16 H 0.104 0.896 17 C -0.168 4.168 18 N -0.550 5.550 19 Si 0.724 3.276 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.197 1.197 23 C -0.041 4.041 24 C 0.036 3.964 25 H 0.090 0.910 26 O -0.370 6.370 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.185 0.815 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.833 15.945 8.995 22.357 hybrid contribution 0.698 -0.909 0.696 1.341 sum -12.135 15.036 9.691 21.616 Atomic orbital electron populations 1.22265 0.76206 1.05175 1.03850 1.43846 1.06787 1.05006 1.52889 1.22012 0.90773 0.91453 1.08285 1.20842 0.96002 0.95073 1.11204 1.21432 0.94561 0.95598 1.04965 1.20088 0.90505 0.87608 1.18300 1.16959 0.85540 0.83516 0.76349 1.90764 1.16237 1.84963 1.51591 1.45647 1.11459 1.05989 1.73158 1.21399 0.96407 0.78443 1.02383 1.22452 0.95907 0.93293 1.01002 0.89125 1.21532 0.94387 0.89597 0.93284 1.44471 1.52471 1.00038 1.36274 1.18576 1.08193 1.18781 0.92227 0.89556 1.25442 0.95653 0.98638 0.97058 1.69763 1.27503 1.28797 1.28935 0.86738 0.76389 0.78856 0.85597 1.21205 1.22825 1.19714 1.22659 0.92547 0.94622 0.94299 1.22958 0.96128 0.92928 0.84359 0.91049 1.86437 1.88162 1.31441 1.30950 0.90592 0.90143 0.87857 0.81524 0.83960 0.83629 0.75961 0.90897 0.91006 0.94332 0.94548 0.92479 0.92416 0.94759 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.59 59.84 0.63 1.21 16 2 N -0.41 -4.55 3.16 -120.24 -0.38 -4.94 16 3 C 0.01 0.09 11.38 -16.91 -0.19 -0.10 16 4 C -0.21 -2.05 10.81 -39.98 -0.43 -2.48 16 5 C -0.14 -1.57 10.35 -39.12 -0.40 -1.97 16 6 C -0.05 -0.66 6.88 -81.98 -0.56 -1.22 16 7 C 0.59 8.46 7.77 -12.86 -0.10 8.36 16 8 O -0.56 -9.28 14.69 5.19 0.08 -9.20 16 9 N -0.71 -9.35 5.37 -61.62 -0.33 -9.68 16 10 C 0.14 1.94 5.00 -4.04 -0.02 1.92 16 11 C -0.11 -1.69 2.75 -88.79 -0.24 -1.94 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.14 2.59 6.52 -3.06 -0.02 2.57 16 14 N -0.60 -14.22 2.99 -170.08 -0.51 -14.72 16 15 C -0.25 -6.98 10.55 -15.06 -0.16 -7.14 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.03 0.93 5.48 -17.43 -0.10 0.84 16 18 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 19 Si 0.89 22.45 24.52 -169.99 -4.17 18.29 16 20 H -0.29 -6.89 7.10 56.52 0.40 -6.49 16 21 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.27 -6.76 6.64 56.52 0.38 -6.38 16 23 C 0.08 1.76 4.65 -2.53 -0.01 1.75 16 24 C 0.10 1.60 3.88 -24.58 -0.10 1.50 16 25 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 26 O -0.57 -8.44 13.47 -35.23 -0.47 -8.91 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.09 6.30 -51.93 -0.33 0.77 16 30 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.15 1.40 7.49 -52.48 -0.39 1.00 16 33 H 0.41 4.63 7.27 -40.82 -0.30 4.33 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 36 H 0.04 0.73 7.77 -51.93 -0.40 0.32 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 40 H 0.03 0.77 5.10 -51.93 -0.26 0.51 16 41 H 0.38 4.04 9.12 45.56 0.42 4.46 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -34.67 335.87 -6.72 -41.39 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.06 Total: 6.25 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.71 Total: 3.30 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.45 Total: -56.17 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.40 Total: -18.11 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.17 Total: 18.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.67 -6.72 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.197 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds