Wall clock time and date at job start Tue Mar 31 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35528 * 125.67815 * 2 1 4 4 C 1.35453 * 108.87289 * 179.97438 * 3 2 1 5 5 C 1.39833 * 107.86373 * 359.97438 * 4 3 2 6 6 C 1.37649 * 125.67774 * 179.69169 * 2 1 3 7 7 C 1.46677 * 126.23564 * 0.02562 * 6 2 1 8 8 O 1.21696 * 119.99881 * 5.00513 * 7 6 2 9 9 N 1.34773 * 120.00511 * 185.00073 * 7 6 2 10 10 C 1.46496 * 120.00662 * 185.26583 * 9 7 6 11 11 C 1.52999 * 109.47511 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.63752 * 56.69478 * 11 10 9 13 13 C 1.54321 * 110.72046 * 293.54780 * 11 10 9 14 14 N 1.47023 * 107.26800 * 219.44030 * 13 11 10 15 15 C 1.36944 * 125.64365 * 178.90592 * 14 13 11 16 16 H 1.07997 * 119.99978 * 324.83017 * 15 14 13 17 17 C 1.38810 * 119.99911 * 144.82542 * 15 14 13 18 18 N 1.31614 * 119.99844 * 167.41381 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 347.42120 * 17 15 14 20 20 H 1.48496 * 109.47376 * 85.17084 * 19 17 15 21 21 H 1.48496 * 109.47056 * 205.17447 * 19 17 15 22 22 H 1.48507 * 109.47194 * 325.17097 * 19 17 15 23 23 C 1.47418 * 108.70668 * 358.94181 * 14 13 11 24 24 C 1.54913 * 104.83067 * 24.13100 * 23 14 13 25 25 H 1.08991 * 111.00428 * 81.06357 * 24 23 14 26 26 O 1.42907 * 111.00182 * 204.91809 * 24 23 14 27 27 H 1.08998 * 109.47523 * 87.98260 * 1 2 3 28 28 H 1.09001 * 109.47220 * 327.97569 * 1 2 3 29 29 H 1.09007 * 109.46991 * 207.98072 * 1 2 3 30 30 H 1.08004 * 125.56531 * 359.95983 * 3 2 1 31 31 H 1.08008 * 126.06538 * 179.97438 * 4 3 2 32 32 H 1.08008 * 126.45611 * 180.02562 * 5 4 3 33 33 H 0.97002 * 119.99758 * 5.27020 * 9 7 6 34 34 H 1.09002 * 109.47310 * 300.01010 * 10 9 7 35 35 H 1.08998 * 109.46869 * 59.99967 * 10 9 7 36 36 H 1.08991 * 109.88563 * 338.86037 * 13 11 10 37 37 H 1.09006 * 109.87831 * 100.02907 * 13 11 10 38 38 H 0.97005 * 119.99479 * 180.02562 * 18 17 15 39 39 H 1.08998 * 110.36545 * 142.96596 * 23 14 13 40 40 H 1.08999 * 110.36861 * 265.17790 * 23 14 13 41 41 H 0.96696 * 113.99484 * 292.19507 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 0.0006 5 6 3.5779 -0.6888 0.0015 6 6 2.2678 -1.1181 0.0060 7 6 1.8124 -2.5124 0.0130 8 8 0.6255 -2.7653 -0.0781 9 7 2.7083 -3.5135 0.1202 10 6 2.2672 -4.9062 0.0114 11 6 3.4717 -5.8365 0.1685 12 1 3.9799 -5.6506 1.1147 13 6 4.4466 -5.6723 -1.0165 14 7 4.9410 -7.0127 -1.3638 15 6 5.8130 -7.3034 -2.3789 16 1 5.7749 -6.7422 -3.3008 17 6 6.7460 -8.3192 -2.2228 18 7 7.4122 -8.7669 -3.2659 19 14 7.0560 -9.0510 -0.5323 20 1 6.0621 -10.1218 -0.2666 21 1 8.4253 -9.6236 -0.4843 22 1 6.9271 -7.9893 0.4980 23 6 4.3420 -7.9919 -0.4389 24 6 3.0364 -7.3216 0.0572 25 1 2.2349 -7.4403 -0.6717 26 8 2.6477 -7.8383 1.3317 27 1 -0.3634 0.0362 -1.0270 28 1 -0.3634 0.8713 0.5450 29 1 -0.3633 -0.9076 0.4822 30 1 1.9081 2.1236 -0.0006 31 1 4.4132 1.3612 0.0003 32 1 4.4583 -1.3144 0.0026 33 1 3.6454 -3.3118 0.2694 34 1 1.5395 -5.1191 0.7945 35 1 1.8084 -5.0668 -0.9642 36 1 3.9245 -5.2375 -1.8686 37 1 5.2805 -5.0338 -0.7247 38 1 8.0639 -9.4770 -3.1568 39 1 4.1161 -8.9203 -0.9635 40 1 5.0136 -8.1837 0.3979 41 1 2.3676 -8.7636 1.3120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957891013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:42 Heat of formation + Delta-G solvation = -34.508196 kcal Electronic energy + Delta-G solvation = -23443.162655 eV Core-core repulsion = 19937.658485 eV Total energy + Delta-G solvation = -3505.504170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.30035 -40.57484 -39.65505 -36.77595 -36.20619 -34.34425 -33.69257 -32.20201 -30.30911 -29.33314 -27.45051 -27.35779 -25.14038 -23.34489 -22.69022 -21.48579 -21.33410 -20.50072 -19.11387 -18.80312 -18.48889 -17.23201 -17.07892 -16.79189 -16.48041 -16.09955 -15.82333 -15.46919 -15.08453 -14.94650 -14.62554 -14.39140 -14.26790 -14.11370 -13.87187 -13.59445 -13.25713 -13.22010 -13.16263 -12.92990 -12.87425 -12.47555 -12.29324 -12.14546 -11.80569 -11.55861 -11.10800 -10.94644 -10.80035 -10.21501 -9.67440 -9.16594 -8.87779 -8.24089 -5.68583 0.47043 1.29023 1.37425 1.47786 1.67660 1.83594 2.34563 2.36984 2.39327 2.92131 3.08831 3.41862 3.59562 3.69541 3.80340 3.97911 3.99982 4.20666 4.24692 4.28153 4.38764 4.45815 4.49872 4.56971 4.69345 4.73830 4.76841 4.83093 4.97178 4.98165 5.18263 5.21582 5.28945 5.34585 5.77298 5.81958 6.01419 6.09590 6.33867 6.47684 6.71587 6.83958 7.11419 7.45209 8.07484 8.95805 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.003587 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.161860 B = 7803.548563 C = 8560.898781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.421 5.421 3 C 0.025 3.975 4 C -0.223 4.223 5 C -0.140 4.140 6 C -0.090 4.090 7 C 0.585 3.415 8 O -0.586 6.586 9 N -0.707 5.707 10 C 0.149 3.851 11 C -0.091 4.091 12 H 0.098 0.902 13 C 0.136 3.864 14 N -0.623 5.623 15 C -0.244 4.244 16 H 0.051 0.949 17 C -0.023 4.023 18 N -0.955 5.955 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.305 1.305 22 H -0.266 1.266 23 C 0.077 3.923 24 C 0.113 3.887 25 H 0.086 0.914 26 O -0.565 6.565 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.206 0.794 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.266 0.734 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 17.271 11.109 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.094 5.094 3 C -0.111 4.111 4 C -0.246 4.246 5 C -0.167 4.167 6 C -0.203 4.203 7 C 0.375 3.625 8 O -0.469 6.469 9 N -0.358 5.358 10 C 0.026 3.974 11 C -0.111 4.111 12 H 0.116 0.884 13 C 0.011 3.989 14 N -0.351 5.351 15 C -0.373 4.373 16 H 0.069 0.931 17 C -0.219 4.219 18 N -0.600 5.600 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.233 1.233 22 H -0.191 1.191 23 C -0.048 4.048 24 C 0.052 3.948 25 H 0.103 0.897 26 O -0.372 6.372 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.222 0.778 31 H 0.181 0.819 32 H 0.172 0.828 33 H 0.250 0.750 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.870 17.508 11.095 24.940 hybrid contribution 0.969 -1.282 0.003 1.607 sum -12.901 16.227 11.097 23.514 Atomic orbital electron populations 1.22353 0.75279 1.05625 1.04336 1.44116 1.07597 1.05004 1.52689 1.22703 0.90442 0.92496 1.05468 1.21206 0.97258 0.94673 1.11479 1.21724 0.94356 0.96729 1.03910 1.20018 0.91521 0.87350 1.21415 1.17246 0.85158 0.84404 0.75670 1.90739 1.17423 1.85523 1.53234 1.45561 1.11845 1.05473 1.72937 1.21180 0.95470 0.78696 1.02092 1.22290 0.95608 0.93476 0.99684 0.88359 1.21629 0.95166 0.87444 0.94639 1.44550 1.52096 1.02690 1.35790 1.18457 1.08724 1.17775 0.92335 0.93128 1.26081 0.95833 0.99602 1.00402 1.69895 1.28904 1.30132 1.31040 0.85730 0.76154 0.78506 0.81137 1.19506 1.23308 1.19097 1.22757 0.94533 0.94209 0.93277 1.22701 0.94256 0.92472 0.85351 0.89662 1.86413 1.87880 1.33338 1.29615 0.90315 0.86721 0.90123 0.77761 0.81915 0.82756 0.75001 0.90602 0.91711 0.94431 0.94079 0.92531 0.93379 0.95453 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 10.59 127.77 1.35 2.39 16 2 N -0.42 -8.56 3.16 -534.32 -1.69 -10.25 16 3 C 0.02 0.38 11.38 83.48 0.95 1.33 16 4 C -0.22 -3.84 10.81 22.01 0.24 -3.60 16 5 C -0.14 -2.96 10.35 22.57 0.23 -2.72 16 6 C -0.09 -2.23 6.88 40.35 0.28 -1.95 16 7 C 0.59 16.59 7.77 86.45 0.67 17.26 16 8 O -0.59 -19.62 14.69 -4.33 -0.06 -19.68 16 9 N -0.71 -17.88 5.37 -467.10 -2.51 -20.39 16 10 C 0.15 4.01 5.00 86.38 0.43 4.44 16 11 C -0.09 -2.70 2.75 -9.61 -0.03 -2.73 16 12 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 13 C 0.14 5.00 6.52 86.73 0.57 5.57 16 14 N -0.62 -29.09 2.99 -692.01 -2.07 -31.16 16 15 C -0.24 -13.91 10.55 84.03 0.89 -13.03 16 16 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 17 C -0.02 -1.35 5.48 84.86 0.47 -0.88 16 18 N -0.95 -59.64 13.97 21.65 0.30 -59.34 16 19 Si 0.96 46.50 24.52 68.60 1.68 48.18 16 20 H -0.27 -12.26 7.10 99.48 0.71 -11.55 16 21 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 22 H -0.27 -12.53 6.64 99.48 0.66 -11.87 16 23 C 0.08 3.11 4.65 86.86 0.40 3.52 16 24 C 0.11 3.46 3.88 31.99 0.12 3.58 16 25 H 0.09 2.42 8.05 -2.39 -0.02 2.40 16 26 O -0.57 -14.97 13.47 -148.98 -2.01 -16.97 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.69 6.30 -2.38 -0.02 1.67 16 30 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 2.77 7.49 -2.91 -0.02 2.75 16 33 H 0.41 8.96 7.27 -92.71 -0.67 8.28 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.85 8.06 -2.39 -0.02 1.84 16 36 H 0.04 1.40 7.77 -2.39 -0.02 1.38 16 37 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 39 H 0.05 2.01 7.88 -2.39 -0.02 1.99 16 40 H 0.03 1.17 5.10 -2.39 -0.01 1.16 16 41 H 0.40 7.11 9.12 -74.06 -0.68 6.43 16 Total: -1.00 -76.18 335.87 -0.12 -76.30 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.34 Total: 20.13 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.57 Total: 13.18 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.97 Total: -121.14 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -2.07 Total: -36.66 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.68 Total: 48.18 kcal Total: -76.18 -0.12 -76.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957891013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.791 kcal (2) G-P(sol) polarization free energy of solvation -76.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds